Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	122	83.8	2844814	99.3%	2824900	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,048,737	A→G	M102T (ATG→ACG)	gcvP ←	glycine decarboxylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,048,737	0	A	G	100.0%	274.7 / NA	73	M102T (ATG→ACG)	gcvP	glycine decarboxylase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (48/25); total (48/25)

AAGAGAAGCAGAGGCCATATCCAGTCCAGTCAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCATGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCGGTGCGCCA  >  NC_000913/3048601‑3048868

aagagaagCAGAGGCCATATCCAGTCCAGTCAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCgtgt                                                                                                                                  >  1:221250/1‑140 (MQ=255)

aagagaagCAGAGACCATATCCAGTCCAGTCAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCgtgt                                                                                                                                  >  2:423286/1‑140 (MQ=255)

  gagaagCAGAGGCCATATCCAGTCCAGTCAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTa                                                                                                                                >  1:430031/1‑140 (MQ=255)

    gaagCAGAGGCCATATCCAGTCCAGTCAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGGGTTACg                                                                                                                              >  2:1409405/1‑140 (MQ=255)

    gaagCAGAGGCCATATCCAGTCCAGTCAAATCCAGCATTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACg                                                                                                                              <  1:844854/140‑1 (MQ=255)

     aagCAGAGGCCATATCCAGTCCAGTCAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGc                                                                                                                             >  1:737932/1‑140 (MQ=255)

     aagCAGAGGCCATATCCAGTCCAGTCAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGc                                                                                                                             >  1:164889/1‑140 (MQ=255)

      agCAGAGGCCATATCCAGTCCAGTCAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCa                                                                                                                            >  1:433424/1‑140 (MQ=255)

        cAGAGGCCATATCCAGTCCAGTCAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAgg                                                                                                                          >  1:134665/1‑140 (MQ=255)

          gagGCCATATCCAGTCCAGTCAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGAt                                                                                                                        >  1:923824/1‑140 (MQ=255)

          gagGCCATATCCAGTCCAGTCAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGAt                                                                                                                        >  1:754109/1‑140 (MQ=255)

              ccATATCCAGTCCAGTCAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAAcc                                                                                                                    >  2:621853/1‑140 (MQ=255)

                       gtccagtcAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGc                                                                                                           >  2:270024/1‑140 (MQ=255)

                        tccagtcAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCt                                                                                                          >  2:584389/1‑140 (MQ=255)

                           agtcAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCa                                                                                                       >  1:1253431/1‑140 (MQ=255)

                           agtcAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCa                                                                                                       <  1:423286/140‑1 (MQ=255)

                           agtcAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGCAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCa                                                                                                       >  2:1367435/1‑140 (MQ=255)

                            gtcAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCAc                                                                                                      >  2:516185/1‑140 (MQ=255)

                            gtcAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCAc                                                                                                      >  1:472328/1‑140 (MQ=255)

                             tcAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCAcg                                                                                                     <  2:430031/140‑1 (MQ=255)

                             tcAAAAGCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGACTTGGGAGGCTTCATGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCAcg                                                                                                     <  2:469483/140‑1 (MQ=255)

                              cAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCAcgg                                                                                                    <  2:737932/140‑1 (MQ=255)

                              cAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCAcgg                                                                                                    <  1:878292/140‑1 (MQ=255)

                                  tCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCa                                                                                                       <  1:193080/133‑1 (MQ=255)

                                  tCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCa                                                                                                       >  2:193080/1‑133 (MQ=255)

                                  tCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGgt                                                                                                <  2:38997/140‑1 (MQ=255)

                                           aCCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCAt                                                                                       >  2:667025/1‑140 (MQ=255)

                                           aCCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCAt                                                                                       >  2:784893/1‑140 (MQ=255)

                                           aCCTGCTGGAAGTTGAGCAGCGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCACCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCAt                                                                                       >  2:49665/1‑140 (MQ=255)

                                             ctgctgGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGc                                                                                     <  1:242944/140‑1 (MQ=255)

                                                ctgGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGa                                                                                  >  1:94742/1‑140 (MQ=255)

                                                 tgGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGAt                                                                                 >  2:974087/1‑140 (MQ=255)

                                                   gAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGt                                                                               <  1:270024/140‑1 (MQ=255)

                                                      gTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAg                                                                            <  2:1202658/140‑1 (MQ=255)

                                                            cAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGa                                                                      <  1:516185/140‑1 (MQ=255)

                                                               tGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGc                                                                   >  1:508714/1‑140 (MQ=255)

                                                                       ggcggcCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTg                                                           <  2:134665/140‑1 (MQ=255)

                                                                         cggcCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCg                                                         >  2:982162/1‑140 (MQ=255)

                                                                         cggcCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCg                                                         >  1:1060343/1‑140 (MQ=255)

                                                                         cggcCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCg                                                         >  1:309845/1‑140 (MQ=255)

                                                                         cggcCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCg                                                         >  1:737823/1‑140 (MQ=255)

                                                                         cggcCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCg                                                         >  1:593579/1‑140 (MQ=255)

                                                                           gcCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGAc                                                       >  1:904539/1‑140 (MQ=255)

                                                                           gcCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGAc                                                       >  1:595293/1‑140 (MQ=255)

                                                                                 ggAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCaa                                                 <  1:982162/140‑1 (MQ=255)

                                                                                      cTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGcc                                            >  1:161234/1‑140 (MQ=255)

                                                                                       ttCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCt                                           >  1:40591/1‑140 (MQ=255)

                                                                                       ttCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCt                                           <  1:621853/140‑1 (MQ=255)

                                                                                       ttCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCt                                           <  2:309845/140‑1 (MQ=255)

                                                                                        tCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCtt                                          <  2:164889/140‑1 (MQ=255)

                                                                                            gTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGt                                      <  1:584389/140‑1 (MQ=255)

                                                                                                 tACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGc                                 <  1:1367435/140‑1 (MQ=255)

                                                                                                 tACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGc                                 >  1:790582/1‑140 (MQ=255)

                                                                                                        tgtACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTgcg                          <  2:923824/140‑1 (MQ=255)

                                                                                                          tACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTgcggc                        >  1:443131/1‑140 (MQ=255)

                                                                                                          tACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTgcggc                        >  1:698971/1‑140 (MQ=255)

                                                                                                          tACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTgcggc                        >  1:1408/1‑140 (MQ=255)

                                                                                                          tACGCGGTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTCCCAGTgcggc                        >  2:875165/1‑140 (MQ=255)

                                                                                                                gTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTc                  >  2:220638/1‑140 (MQ=255)

                                                                                                                gTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTc                  >  2:963270/1‑140 (MQ=255)

                                                                                                                gTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTc                  >  1:585863/1‑140 (MQ=255)

                                                                                                                gTATACCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTc                  >  1:1374866/1‑140 (MQ=255)

                                                                                                                    aCCAGCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTc              >  1:1023054/1‑140 (MQ=255)

                                                                                                                        gCCCGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCg          <  2:508714/140‑1 (MQ=255)

                                                                                                                         cccGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCgg         >  2:995928/1‑140 (MQ=255)

                                                                                                                         cccGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCgg         >  2:959713/1‑140 (MQ=255)

                                                                                                                           cGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCGGTg       >  2:1375991/1‑140 (MQ=255)

                                                                                                                           cGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCGGTg       >  1:66156/1‑140 (MQ=255)

                                                                                                                           cGGATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCGGTg       >  2:22892/1‑140 (MQ=255)

                                                                                                                             gATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCGGTgcg     >  2:338081/1‑140 (MQ=255)

                                                                                                                             gATTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCGGTgcg     >  2:202100/1‑140 (MQ=255)

                                                                                                                              aTTTTCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCGGTgcgc    <  2:1023054/140‑1 (MQ=255)

                                                                                                                               ttttCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCGGTGCGcc   <  2:443131/140‑1 (MQ=255)

                                                                                                                                tttCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCGGTGCGCCa  <  1:1409405/140‑1 (MQ=255)

                                                                                                                                tttCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCGGTGCGCCa  <  1:1375991/140‑1 (MQ=255)

                                                                                                                                tttCCAGCGTGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCGGTGCGCCa  <  2:593579/140‑1 (MQ=255)

AAGAGAAGCAGAGGCCATATCCAGTCCAGTCAAATCCAGCGTTACCTGCTGGAAGTTGAGCAGTGCTTCAAGGCGGCCCTGGGAGACTTCAGGTTGATACGGAGTGTACGCGGTATACCAGCCCGGATTTTCCAGCATGTTACGCAGGATAACCGGCGGTAGCTGCACGGCGGTGTAACCCATGCCGATGTAAGACGTGAAGCGTTTATTGCGACTGGCAATAGCCTTGAGTTCTGCCAGTGCGGCGTATTCGGTCGCCGGTGCGCCA  >  NC_000913/3048601‑3048868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A