Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
12 12 12

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 1119 1291
Multiple Base Substitutions 0 0
Deletions 80 170
Insertions 141 209
Mobile Element Insertions 2 13
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 1342 1683

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 150 0 55.2 2087638 89.3% 1864260 138.4
A2 F28 I1 R1 136 0 23.6 792106 99.3% 786561 138.8
A3 F28 I1 R1 170 0 48.1 1621790 99.2% 1608815 139.2
A4 F28 I1 R1 147 0 24.9 839862 99.2% 833143 138.4
A5 F28 I1 R1 179 0 72.1 2448974 99.2% 2429382 138.4
A6 F28 I1 R1 143 0 68.4 2327250 99.3% 2310959 138.6
A7 F28 I1 R1 154 0 64.7 2190374 99.2% 2172851 138.5
A8 F28 I1 R1 126 0 61.6 2097088 99.2% 2080311 138.6
A9 F28 I1 R1 121 0 63.2 2159928 99.4% 2146968 138.7
A10 F28 I1 R1 122 0 83.8 2844814 99.3% 2824900 138.8
A11 F28 I1 R1 132 0 20.9 710818 98.8% 702288 138.5
A12 F28 I1 R1 103 0 67.9 2307646 99.4% 2293800 139.0

Mutation Needle Plot

Mutation Targets

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