mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 8,588 | A→G | K117K (AAA→AAG) | talB → | transaldolase B |
| RA | 10,933 | C→T | D142N (GAT→AAT) S35L (TCG→TTG) |
yaaW ← mbiA → |
putative enzyme‑specific chaperone YaaW uncharacterized protein MbiA |
| RA | 19,701 | C→T | intergenic (+81/+110) | nhaR → / ← insB‑1 | DNA‑binding transcriptional activator NhaR/IS1 protein InsB |
| RA | 20,770 | (A)7→8 | intergenic (‑262/+45) | insA‑1 ← / ← rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 |
| RA | 113,502 | G→A | R20H (CGC→CAC) | guaC → | GMP reductase |
| RA | 118,912 | A→G | A60A (GCA→GCG) | ampD → | 1,6‑anhydro‑N‑acetylmuramoyl‑L‑alanine amidase |
| RA | 120,164 | A→G | intergenic (+29/+14) | ampE → / ← aroP | protein AmpE/aromatic amino acid:H(+) symporter AroP |
| RA | 130,624 | G→A | P213S (CCC→TCC) | yacH ← | DUF3300 domain‑containing protein YacH |
| RA | 136,457 | (T)8→7 | coding (8/867 nt) | speE ← | spermidine synthase |
| RA | 140,964 | A→G | W88R (TGG→CGG) | gcd ← | quinoprotein glucose dehydrogenase |
| RA | 195,129 | A→G | N76S (AAC→AGC) | ispU → | undecaprenyl diphosphate synthase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 262,512 | G→A | G337D (GGC→GAC) | proA → | glutamate‑5‑semialdehyde dehydrogenase |
| RA | 272,726 | A→G | intergenic (+72/‑121) | eyeA → / → ykfC | CP4‑6 prophage; small RNA EyeA/CP4‑6 prophage; PF00078 domain‑containing protein YkfC |
| RA | 338,109 | C→T | G444G (GGC→GGT) | yahF → | putative acyl‑CoA synthetase YahF |
| RA | 363,997 | C→T | W770* (TGG→TAG) | lacZ ← | beta‑galactosidase |
| RA | 372,113 | T→C | intergenic (+8/‑2) | mhpC → / → mhpD | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioate hydrolase/2‑hydroxypentadienoate hydratase |
| RA | 373,630 | T→C | V237A (GTA→GCA) | mhpF → | acetaldehyde dehydrogenase (acylating) |
| RA | 380,022 | (G)10→9 | intergenic (‑141/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| RA | 383,661 | (T)7→8 | coding (275/1197 nt) | yaiP ← | putative glucosyltransferase |
| RA | 388,324 | C→T | A177V (GCG→GTG) | tauD → | taurine dioxygenase |
| RA | 523,138 | T→C | intergenic (+308/‑123) | ybbP → / → rhsD | putative ABC transporter membrane subunit YbbP/protein RhsD |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 542,474 | A→G | N196S (AAC→AGC) | glxK → | glycerate 2‑kinase 2 |
| RA | 543,951 | A→G | D32D (GAT→GAC) | allE ← | (S)‑ureidoglycine aminohydrolase |
| RA | 602,098 | C→T | P47L (CCG→CTG) | pheP → | phenylalanine:H(+) symporter PheP |
| RA | 634,668 | A→G | P361P (CCA→CCG) | ybdL → | methionine‑oxo‑acid transaminase, PLP‑dependent |
| RA | 718,276 | C→T | G729R (GGG→AGG) | speF ← | ornithine decarboxylase, degradative |
| RA | 783,505 | G→A | A114T (GCG→ACG) | pnuC → | nicotinamide riboside transporter |
| RA | 805,840 | G→A | intergenic (+76/+158) | ybhJ → / ← ybhC | putative hydratase YbhJ/outer membrane lipoprotein YhbC |
| RA | 805,853 | Δ1 bp | intergenic (+89/+145) | ybhJ → / ← ybhC | putative hydratase YbhJ/outer membrane lipoprotein YhbC |
| RA | 805,855 | T→C | intergenic (+91/+143) | ybhJ → / ← ybhC | putative hydratase YbhJ/outer membrane lipoprotein YhbC |
| RA | 805,863 | A→G | intergenic (+99/+135) | ybhJ → / ← ybhC | putative hydratase YbhJ/outer membrane lipoprotein YhbC |
| RA | 851,235 | A→G | S455P (TCC→CCC) | opgE ← | phosphoethanolamine transferase |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 945,259 | A→G | V100A (GTC→GCC) | ycaC ← | putative hydrolase |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,018,976 | (A)8→7 | intergenic (+39/+37) | matP → / ← ompA | macrodomain Ter protein/outer membrane porin A |
| RA | 1,058,514 | A→G | Y144C (TAC→TGC) | torC → | cytochrome c menaquinol dehydrogenase TorC |
| RA | 1,060,660 | G→A | G469S (GGT→AGT) | torA → | trimethylamine N‑oxide reductase 1 |
| RA | 1,068,636 | T→G | T402P (ACG→CCG) | rutG ← | pyrimidine:H(+) symporter |
| RA | 1,108,491 | T→C | T151A (ACG→GCG) | opgC ← | protein required for succinyl modification of osmoregulated periplasmic glucans |
| RA | 1,124,696 | C→T | V211I (GTC→ATC) | mdtH ← | multidrug efflux pump MdtH |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,224,789 | A→G | G191G (GGT→GGC) | minD ← | Z‑ring positioning protein MinD |
| RA | 1,239,202 | A→G | A108A (GCA→GCG) | dadX → | alanine racemase 2 |
| RA | 1,282,055 | A→G | Y731C (TAC→TGC) | narG → | nitrate reductase A subunit alpha |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,346,121 | C→T | G208S (GGC→AGC) | pdeR ← | cyclic di‑GMP phosphodiesterase PdeR |
| RA | 1,365,592 | C→T | P15S (CCG→TCG) | puuE → | 4‑aminobutyrate aminotransferase PuuE |
| RA | 1,399,985 | (C)7→8 | coding (252/516 nt) | ogt ← | methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase |
| RA | 1,421,650 | (C)7→8 | coding (532/858 nt) | ydaU → | Rac prophage; DUF1376 domain‑containing protein YdaU |
| RA | 1,423,893 | (A)6→5 | coding (112/1458 nt) | trkG → | Rac prophage; K(+) transporter TrkG |
| RA | 1,476,379 | A→G | G412G (GGA→GGG) | ydbD → | DUF2773 domain‑containing protein YdbD |
| RA | 1,478,403 | A→G | T60A (ACG→GCG) | ynbB → | putative CDP‑diglyceride synthase |
| RA | 1,487,156 | A→G | intergenic (+193/‑79) | hrpA → / → ydcF | ATP‑dependent RNA helicase HrpA/DUF218 domain‑containing protein YdcF |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,555,425 | T→C | D82G (GAC→GGC) | maeA ← | malate dehydrogenase, NAD‑requiring |
| RA | 1,575,914 | T→C | Y569C (TAC→TGC) | yddB ← | putative TonB‑dependent receptor |
| RA | 1,583,276 | T→C | K138E (AAA→GAA) | ydeO ← | DNA‑binding transcriptional dual regulator YdeO |
| RA | 1,594,132 | (C)8→9 | pseudogene (3955/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,594,256 | (C)8→9 | pseudogene (3831/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,625,704 | C→T | M559I (ATG→ATA) | dcp ← | peptidyl‑dipeptidase Dcp |
| RA | 1,634,642 | C→T | G82S (GGC→AGC) | tfaQ ← | Qin prophage; putative tail fiber assembly protein TfaQ |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,701,234 | G→A | G93D (GGC→GAC) | malY → | negative regulator of MalT activity/cystathionine beta‑lyase |
| RA | 1,712,518 | (C)6→7 | intergenic (+360/‑251) | nth → / → dtpA | endonuclease III/dipeptide/tripeptide:H(+) symporter DtpA |
| RA | 1,714,326 | (T)9→8 | intergenic (+55/‑51) | dtpA → / → gstA | dipeptide/tripeptide:H(+) symporter DtpA/glutathione S‑transferase GstA |
| RA | 1,810,080 | T→C | intergenic (+32/‑131) | hxpB → / → ydjM | hexitol phosphatase B/putative inner membrane protein regulated by LexA |
| RA | 1,827,021 | G→A | D413D (GAC→GAT) | astB ← | N‑succinylarginine dihydrolase |
| RA | 1,835,096 | T→C | W97R (TGG→CGG) | ydjZ → | DedA family protein YdjZ |
| RA | 1,835,696 | T→C | V61A (GTA→GCA) | ynjA → | AhpD‑like domain‑containing protein YnjA |
| RA | 1,860,490 | T→C | K281K (AAA→AAG) | ydjL ← | putative zinc‑binding dehydrogenase YdjL |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,880,907 | (A)5→4 | coding (903/924 nt) | dmlR ← | DNA‑binding transcriptional regulator DmlR |
| RA | 1,882,947 | G→A | A346T (GCC→ACC) | dmlA → | D‑malate/3‑isopropylmalate dehydrogenase (decarboxylating) |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 1,997,792 | T→C | N8S (AAC→AGC) | tcyN ← | cystine ABC transporter ATP binding subunit |
| RA | 2,106,559 | A→G | V223A (GTT→GCT) | wbbH ← | putative O‑antigen polymerase |
| RA | 2,125,891 | A→G | V111A (GTA→GCA) | gmm ← | GDP‑mannose mannosyl hydrolase |
| RA | 2,143,684 | (G)6→7 | coding (419/3318 nt) | dgcE → | putative diguanylate cyclase DgcE |
| RA | 2,156,246 | G→A | V328V (GTG→GTA) | mdtB → | multidrug efflux pump RND permease subunit MdtB |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,177,020 | A→G | L62P (CTG→CCG) | gatY ← | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY |
| RA | 2,214,339 | (C)6→5 | coding (306/1686 nt) | btsS ← | high‑affinity pyruvate receptor |
| RA | 2,220,451 | +C | coding (1539/2298 nt) | bglX ← | beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,231,366 | A→G | S116S (TCA→TCG) | yohK → | PF04712 family membrane protein YohK |
| RA | 2,253,386 | T→C | T254A (ACC→GCC) | nupX ← | putative nucleoside transporter |
| RA | 2,288,561 | (C)7→8 | pseudogene (354/2525 nt) | yejO ← | adhesin‑like autotransporter YejO |
| RA | 2,308,123 | A→T | F165I (TTT→ATT) | yojI ← | ABC transporter family protein/microcin J25 efflux protein |
| RA | 2,319,449 | T→C | N143S (AAC→AGC) | rcsC ← | sensory histidine kinase RcsC |
| RA | 2,383,475 | T→C | F255L (TTC→CTC) | elaD → | protease ElaD |
| RA | 2,431,944 | T→C | L333L (CTA→CTG) | folC ← | bifunctional folylpolyglutamate synthetase/dihydrofolate synthetase |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,462,889 | (C)9→10 | intergenic (+243/‑123) | fadL → / → yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| RA | 2,520,607 | A→G | T22T (ACT→ACC) | gltX ← | glutamate‑‑tRNA ligase |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,605,253 | G→A | C148Y (TGC→TAC) | hyfD → | hydrogenase 4 component D |
| RA | 2,644,744 | G→A | H41Y (CAC→TAC) | ndk ← | nucleoside diphosphate kinase |
| RA | 2,672,181 | T→A | P45P (CCT→CCA) | hcaD → | putative 3‑phenylpropionate/cinnamate dioxygenase ferredoxin reductase subunit |
| RA | 2,732,474 | T→C | H567R (CAC→CGC) | clpB ← | ClpB chaperone |
| JC | 2,734,543 | (C)8→11 | coding (492/732 nt) | pgeF ← | polyphenol oxidase YfiH |
| RA | 2,734,931 | T→C | N35S (AAC→AGC) | pgeF ← | polyphenol oxidase YfiH |
| RA | 2,744,884 | A→G | V152V (GTT→GTC) | trmD ← | tRNA m(1)G37 methyltransferase |
| RA | 2,775,592 | T→C | pseudogene (48/272 nt) | ypjI → | putative UPF0401 protein YpjI |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,813,669 | G→A | A352T (GCC→ACC) | emrB → | multidrug efflux pump membrane subunit EmrB |
| RA | 2,825,534 | A→G | L15L (TTG→CTG) | mltB ← | membrane‑bound lytic murein transglycosylase B |
| RA | 2,838,677 | T→C | E196E (GAA→GAG) | ascG ← | DNA‑binding transcriptional repressor AscG |
| RA | 2,842,888 | T→C | E52E (GAA→GAG) | hycI ← | hydrogenase 3 maturation protease |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,900,306 | (A)9→8 | intergenic (‑33/‑286) | ygcW ← / → yqcE | putative deoxygluconate dehydrogenase/putative transport protein YqcE |
| RA | 2,910,815 | T→C | T93A (ACA→GCA) | mazF ← | endoribonuclease toxin MazF |
| RA | 2,936,150 | T→C | G189G (GGT→GGC) | fucI → | L‑fucose isomerase |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 2,974,125 | T→C | E630E (GAA→GAG) | aas ← | acyltransferase |
| RA | 2,983,421 | T→C | Q235R (CAG→CGG) | kduI ← | 5‑dehydro‑4‑deoxy‑D‑glucuronate isomerase |
| RA | 3,002,670 | G→A | L19L (CTG→CTA) | xdhB → | putative xanthine dehydrogenase FAD‑binding subunit XdhB |
| RA | 3,009,586 | G→A | A275T (GCG→ACG) | ygeY → | putative peptidase YgeY |
| RA | 3,010,569 | T→C | V181A (GTG→GCG) | hyuA → | phenylhydantoinase |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,124,790 | C→T | A224T (GCA→ACA) | glcF ← | glycolate dehydrogenase, putative iron‑sulfur subunit |
| RA | 3,127,983 | T→C | L13L (TTA→TTG) | glcD ← | glycolate dehydrogenase, putative FAD‑linked subunit |
| RA | 3,157,434 | A→G | D271G (GAC→GGC) | dkgA → | methylglyoxal reductase DkgA |
| RA | 3,162,008 | T→C | Y221C (TAC→TGC) | ftsP ← | cell division protein required during stress conditions |
| RA | 3,176,507 | A→G | G109G (GGT→GGC) | cpdA ← | cAMP phosphodiesterase |
| RA | 3,179,396 | A→G | T428A (ACG→GCG) | tolC → | outer membrane channel TolC |
| RA | 3,221,241 | T→C | T3A (ACC→GCC) | ygjH ← | putative tRNA‑binding protein YgjH |
| RA | 3,243,983 | T→C | E253E (GAA→GAG) | uxaC ← | D‑glucoronate/D‑galacturonate isomerase |
| RA | 3,269,956 | T→C | intergenic (+354/+260) | yhaC → / ← rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component |
| RA | 3,270,143 | C→T | intergenic (+541/+73) | yhaC → / ← rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component |
| RA | 3,270,488 | (C)7→8 | noncoding (105/377 nt) | rnpB ← | RNase P catalytic RNA component |
| RA | 3,279,087 | T→C | G58G (GGT→GGC) | kbaZ → | tagatose‑1,6‑bisphosphate aldolase 1 subunit KbaZ |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,370,634 | T→C | T135A (ACG→GCG) | nanE ← | putative N‑acetylmannosamine‑6‑phosphate epimerase |
| RA | 3,375,112 | G→A | A82T (GCG→ACG) | dcuD → | putative transporter DcuD |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,389,224 | T→C | T38T (ACA→ACG) | aaeX ← | DUF1656 domain‑containing protein AaeX |
| RA | 3,416,904 | T→C | G624G (GGT→GGC) | acrF → | multidrug efflux pump RND permease AcrF |
| RA | 3,416,925 | A→G | K631K (AAA→AAG) | acrF → | multidrug efflux pump RND permease AcrF |
| RA | 3,445,283 | T→C | A105A (GCA→GCG) | rplR ← | 50S ribosomal subunit protein L18 |
| RA | 3,454,040 | A→G | G453G (GGT→GGC) | gspA ← | Type II secretion system protein GspA |
| RA | 3,511,746 | (A)8→7 | coding (599/906 nt) | yhfZ ← | putative DNA‑binding transcriptional regulator YhfZ |
| RA | 3,544,618 | G→A | A76V (GCC→GTC) | bioH ← | pimeloyl‑acyl carrier protein methyl ester esterase |
| RA | 3,559,692 | A→G | E475E (GAA→GAG) | rtcR → | DNA‑binding transcriptional activator RtcR |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,627,725 | T→C | N605S (AAC→AGC) | rbbA ← | ribosome‑associated ATPase |
| RA | 3,707,077 | G→A | T210I (ACC→ATC) | dppA ← | dipeptide ABC transporter periplasmic binding protein |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,817,826 | T→C | S23P (TCA→CCA) | dinD → | DNA damage‑inducible protein D |
| RA | 3,836,534 | (C)6→7 | intergenic (+218/‑419) | selC → / → setC | tRNA‑Sec/putative arabinose exporter |
| RA | 3,848,200 | A→C | L142R (CTG→CGG) | uhpC ← | inner membrane protein sensing glucose‑6‑phosphate |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,926,414 | A→G | G14G (GGT→GGC) | mioC ← | flavoprotein MioC |
| RA | 3,927,168 | A→G | Y5C (TAC→TGC) | asnA → | asparagine synthetase A |
| RA | 4,016,607 | T→C | G59G (GGT→GGC) | udp → | uridine phosphorylase |
| RA | 4,066,018 | A→C | F393V (TTC→GTC) | yihP ← | putative 2,3‑dihydroxypropane‑1‑sulfonate export protein |
| RA | 4,219,075 | A→G | L160L (CTA→CTG) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,227,425 | G→A | V1200I (GTT→ATT) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,403,047 | A→G | N337S (AAC→AGC) | hflK → | regulator of FtsH protease |
| RA | 4,436,234 | A→G | V111A (GTC→GCC) | cpdB ← | 2'3' cyclic nucleotide phosphodiesterase/3' nucleotidase |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,522,512 | A→G | V528A (GTT→GCT) | yjhG ← | KpLE2 phage‑like element; D‑xylonate dehydratase |
| RA | 4,548,234 | A→G | I165V (ATC→GTC) | fimF → | type 1 fimbriae minor subunit FimF |
| RA | 4,565,402 | (T)6→5 | coding (449/1152 nt) | yjiM ← | putative dehydratase subunit |
| RA | 4,578,409 | A→G | L310P (CTA→CCA) | mcrB ← | 5‑methylcytosine‑specific restriction enzyme subunit McrB |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3269984 | 3270113 | 130 | 11 [8] | [9] 13 | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component |
| * | * | ÷ | NC_000913 | 3423783–3424234 | 3424525–3424239 | 6–743 | 11 [10] | [8] 14 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 3942150–3943392 | 3945443–3944036 | 645–3294 | 11 [10] | [7] 11 | [rrsC]–[rrlC] | [rrsC],gltU,[rrlC] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 48 (1.000) | 24 (0.570) | 20/244 | 0.9 | 36.5% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 41 (0.970) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 48 (1.000) | 15 (0.350) | 12/244 | 2.0 | 26.5% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 41 (0.970) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 3363001 = | 78 (1.630) | 74 (1.560) | 49/274 | 0.0 | 64.8% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 3 (0.060) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 50 (1.050) | 35/276 | 0.3 | 92.6% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 4 (0.080) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | 4542682 = | 34 (0.710) | 17 (0.380) | 16/258 | 1.5 | 34.1% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 34 (0.760) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 34 (0.710) | 21 (0.470) | 17/258 | 1.4 | 39.0% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 34 (0.760) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||