mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 64,626 | A→G | G385G (GGT→GGC) | polB ← | DNA polymerase II |
| RA | 78,635 | (G)5→6 | coding (1015/1179 nt) | setA → | sugar exporter SetA |
| RA | 92,022 | C→T | P204S (CCG→TCG) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 125,814 | C→T | D40D (GAC→GAT) | aceF → | pyruvate dehydrogenase, E2 subunit |
| RA | 202,830 | C→T | R91C (CGC→TGC) | lpxA → | UDP‑N‑acetylglucosamine acyltransferase |
| RA | 211,164 | C→T | P496S (CCG→TCG) | ldcC → | lysine decarboxylase 2 |
| RA | 211,686 | C→T | R670C (CGC→TGC) | ldcC → | lysine decarboxylase 2 |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 282,806 | C→T | R177C (CGC→TGC) | yagE → | CP4‑6 prophage; putative 2‑keto‑3‑deoxygluconate aldolase |
| RA | 312,889 | A→G | intergenic (‑112/+252) | ykgM ← / ← ykgR | putative ribosomal protein/putative membrane protein YkgR |
| RA | 316,465 | T→C | pseudogene (672/687 nt) | ykgA ← | putative DNA‑binding transcriptional regulator YkgA |
| RA | 325,853 | A→G | R465R (CGT→CGC) | betA ← | choline dehydrogenase |
| RA | 343,869 | A→G | E329G (GAG→GGG) | yahK → | aldehyde reductase, NADPH‑dependent |
| RA | 350,125 | T→C | S38S (AGT→AGC) | prpC → | 2‑methylcitrate synthase |
| RA | 367,514 | C→T | intergenic (‑4/+73) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR |
| RA | 371,588 | (G)6→7 | coding (350/867 nt) | mhpC → | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioate hydrolase |
| RA | 372,096 | A→G | A286A (GCA→GCG) | mhpC → | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioate hydrolase |
| RA | 399,283 | A→G | N17N (AAT→AAC) | yaiY ← | inner membrane protein |
| RA | 452,876 | C→T | A224T (GCC→ACC) | ampG ← | muropeptide:H(+) symporter |
| RA | 453,367 | (A)5→6 | coding (179/1476 nt) | ampG ← | muropeptide:H(+) symporter |
| RA | 482,381 | C→T | G675S (GGT→AGT) | acrB ← | multidrug efflux pump RND permease AcrB |
| RA | 524,888 | T→C | L543S (TTG→TCG) | rhsD → | protein RhsD |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 549,208 | T→C | G284G (GGT→GGC) | ylbE → | DUF1116 domain‑containing protein YlbE |
| RA | 561,696 | (G)6→7 | coding (2000/2604 nt) | sfmD → | putative fimbrial usher protein SfmD |
| RA | 626,394 | C→T | R109C (CGT→TGT) | entE → | 2,3‑dihydroxybenzoate‑AMP ligase |
| RA | 656,991 | C→T | I145I (ATC→ATT) | pagP → | Lipid IVA palmitoyltransferase |
| RA | 671,928 | C→T | A87T (GCA→ACA) | lptE ← | lipopolysaccharide assembly protein LptE |
| RA | 699,967 | A→G | R120R (CGT→CGC) | umpH ← | UMP phosphatase |
| RA | 732,974 | G→A | S1131N (AGC→AAC) | rhsC → | rhs element protein RhsC |
| RA | 752,962 | (G)6→7 | intergenic (‑167/+223) | ybgD ← / ← gltA | putative fimbrial protein YbgD/citrate synthase |
| RA | 788,084 | C→T | A252T (GCC→ACC) | galM ← | galactose‑1‑epimerase |
| RA | 868,422 | (C)8→7 | coding (903/1872 nt) | gsiA → | glutathione ABC transporter ATP binding subunit GsiA |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 894,989 | C→T | intergenic (+93/‑2) | potF → / → potG | putrescine ABC transporter periplasmic binding protein/putrescine ABC transporter ATP binding subunit |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 941,941 | C→T | P328L (CCA→CTA) | dmsA → | dimethyl sulfoxide reductase subunit A |
| RA | 956,966 | +T | coding (205/693 nt) | ycaP → | DUF421 domain‑containing protein YcaP |
| RA | 980,658 | A→G | T1445A (ACC→GCC) | mukB → | chromosome partitioning protein MukB |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,041,264 | A→G | L216L (TTA→TTG) | appA → | periplasmic phosphoanhydride phosphatase/multiple inositol‑polyphosphate phosphatase |
| RA | 1,053,516 | (G)6→7 | coding (2663/2745 nt) | torS ← | sensory histidine kinase TorS |
| RA | 1,102,607 | T→C | K197R (AAG→AGG) | csgD ← | DNA‑binding transcriptional dual regulator CsgD |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,210,758 | C→T | A138V (GCG→GTG) | mcrA → | e14 prophage; 5‑methylcytosine‑specific restriction enzyme McrA |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,231,060 | (A)6→7 | coding (294/420 nt) | umuD → | DNA polymerase V protein UmuD |
| RA | 1,238,009 | T→C | Y147H (TAT→CAT) | dadA → | D‑amino acid dehydrogenase |
| RA | 1,245,841 | A→G | Y512Y (TAT→TAC) | treA ← | periplasmic trehalase |
| RA | 1,298,691 | A→G | I32V (ATC→GTC) | ychE → | putative inner membrane protein |
| RA | 1,327,734 | T→C | intergenic (+7/+33) | rluB → / ← btuR | 23S rRNA pseudouridine(2605) synthase/cobinamide/cobalamin adenosyltransferase |
| RA | 1,370,044 | (T)9→8 | intergenic (+41/‑172) | pspE → / → ycjM | thiosulfate sulfurtransferase PspE/glucosylglycerate phosphorylase |
| RA | 1,437,392 | A→G | R1131R (CGT→CGC) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,453,613 | A→G | G10G (GGT→GGC) | paaZ ← | oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 1,464,087 | T→C | R183R (CGT→CGC) | paaX → | DNA‑binding transcriptional repressor PaaX |
| RA | 1,538,650 | A→G | R68R (CGT→CGC) | narY ← | nitrate reductase Z subunit beta |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,547,687 | C→G | A96G (GCC→GGC) | fdnG → | formate dehydrogenase N subunit alpha |
| RA | 1,555,706 | (G)6→7 | intergenic (‑37/+120) | maeA ← / ← sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 |
| RA | 1,563,067 | T→C | T4A (ACC→GCC) | ddpX ← | D‑alanyl‑D‑alanine dipeptidase |
| RA | 1,590,521 | A→G | pseudogene (16/203 nt) | yneL ← | putative HTH‑type transcriptional regulator YneL |
| RA | 1,634,642 | C→T | G82S (GGC→AGC) | tfaQ ← | Qin prophage; putative tail fiber assembly protein TfaQ |
| RA | 1,656,524 | T→C | V114A (GTT→GCT) | speG → | spermidine N‑acetyltransferase |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,728,154 | T→C | G106G (GGT→GGC) | gloA → | glyoxalase I |
| RA | 1,738,112 | A→G | Y90C (TAC→TGC) | purR → | DNA‑binding transcriptional repressor PurR |
| RA | 1,741,941 | G→A | G177S (GGC→AGC) | cfa → | cyclopropane fatty acyl phospholipid synthase |
| RA | 1,763,242 | A→G | A256A (GCT→GCC) | sufB ← | Fe‑S cluster scaffold complex subunit SufB |
| RA | 1,807,950 | T→C | L52P (CTT→CCT) | yniA → | putative kinase YniA |
| RA | 1,847,724 | (C)6→5 | coding (285/1044 nt) | selD ← | selenide, water dikinase |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| RA | 1,875,056 | (C)6→5 | coding (521/822 nt) | nimR ← | DNA‑binding transcriptional repressor NimR |
| RA | 1,877,189 | T→C | L94P (CTC→CCC) | yeaO → | conserved protein YeaO |
| RA | 1,879,362 | (T)8→7 | intergenic (‑107/+41) | yeaQ ← / ← yoaG | PF04226 family protein YeaQ/DUF1869 domain‑containing protein YoaG |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,882,687 | G→A | G259D (GGC→GAC) | dmlA → | D‑malate/3‑isopropylmalate dehydrogenase (decarboxylating) |
| RA | 1,911,124 | A→G | A283A (GCA→GCG) | yebQ → | putative transporter YebQ |
| RA | 1,933,564 | G→A | F347F (TTC→TTT) | edd ← | phosphogluconate dehydratase |
| RA | 1,953,927 | A→G | E162E (GAA→GAG) | cmoB → | tRNA U34 carboxymethyltransferase |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,006,753 | C→T | L200L (CTG→TTG) | amyA → | alpha‑amylase |
| RA | 2,070,892 | T→C | pseudogene (107/426 nt) | yeeP → | CP4‑44 prophage; putative GTP‑binding protein |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,202,729 | T→C | G817G (GGT→GGC) | yehI → | DUF4132 domain‑containing protein YehI |
| RA | 2,263,065 | T→C | Q144R (CAG→CGG) | fruB ← | fructose‑specific PTS multiphosphoryl transfer protein FruB |
| RA | 2,329,648 | T→C | L50L (TTA→TTG) | yfaQ ← | tandem DUF2300 domain‑containing protein YfaQ |
| RA | 2,340,851 | A→G | S1107P (TCG→CCG) | yfaL ← | putative autotransporter adhesin YfaL |
| RA | 2,361,222 | T→C | T65A (ACG→GCG) | rhmD ← | L‑rhamnonate dehydratase |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,469,150 | T→C | V7A (GTA→GCA) | yfdI → | CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase |
| RA | 2,481,618 | T→C | T187A (ACA→GCA) | emrY ← | tripartite efflux pump membrane subunit EmrY |
| RA | 2,510,259 | G→A | L210L (CTG→CTA) | yfeO → | putative transport protein YfeO |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,529,127 | G→A | G350G (GGC→GGT) | ligA ← | DNA ligase |
| RA | 2,567,343 | A→G | G255G (GGT→GGC) | eutH ← | putative inner membrane protein |
| RA | 2,577,002 | G→A | T459I (ACT→ATT) | maeB ← | malate dehydrogenase |
| RA | 2,626,339 | G→A | V409M (GTG→ATG) | ppx → | exopolyphosphatase |
| RA | 2,631,526 | A→G | I337T (ATC→ACC) | guaA ← | GMP synthetase |
| RA | 2,658,432 | G→A | T168T (ACC→ACT) | hscA ← | iron‑sulfur cluster biosynthesis chaperone HscA |
| RA | 2,704,371 | A→G | T313T (ACT→ACC) | lepB ← | signal peptidase I |
| RA | 2,750,543 | T→C | T56A (ACC→GCC) | grpE ← | nucleotide exchange factor GrpE |
| RA | 2,766,869 | C→T | R318C (CGT→TGT) | rnlA → | CP4‑57 prophage; RNase LS, toxin of the RnlAB toxin‑antitoxin system |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,825,612 | T→C | intergenic (‑36/‑220) | mltB ← / → srlA | membrane‑bound lytic murein transglycosylase B/sorbitol‑specific PTS enzyme IIC2 component |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,859,768 | T→C | S3S (TCT→TCC) | pphB → | phosphoprotein phosphatase 2 |
| RA | 2,891,254 | C→T | S215S (TCG→TCA) | cysJ ← | sulfite reductase, flavoprotein subunit |
| RA | 2,927,899 | T→C | intergenic (+227/‑330) | ppnN → / → sdaC | nucleotide 5'‑monophosphate nucleosidase/serine:H(+) symporter SdaC |
| RA | 2,941,637 | T→C | intergenic (‑6/+13) | ygdD ← / ← gcvA | conserved inner membrane protein YgdD/DNA‑binding transcriptional dual regulator GcvA |
| RA | 2,947,713 | (T)7→8 | intergenic (+30/+44) | metV → / ← amiC | tRNA‑Met/N‑acetylmuramoyl‑L‑alanine amidase C |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 3,026,030 | G→A | E89K (GAA→AAA) | guaD → | guanine deaminase |
| RA | 3,032,464 | T→C | G366G (GGT→GGC) | uacT → | urate:H(+) symporter |
| RA | 3,063,159 | G→A | G58D (GGC→GAC) | argK → | methylmalonyl‑CoA mutase‑interacting GTPase YgfD |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,073,789 | G→A | intergenic (‑98/+187) | epd ← / ← yggC | D‑erythrose‑4‑phosphate dehydrogenase/P‑loop NTPase domain‑containing protein YggC |
| RA | 3,101,039 | (C)7→8 | coding (585/720 nt) | yggN ← | putative EcfF |
| RA | 3,178,288 | T→C | S58S (AGT→AGC) | tolC → | outer membrane channel TolC |
| RA | 3,179,134 | T→C | S340S (AGT→AGC) | tolC → | outer membrane channel TolC |
| RA | 3,193,489 | T→C | L209P (CTG→CCG) | yqiK → | protein YqiK |
| RA | 3,235,560 | G→A | Q106* (CAG→TAG) | rlmG ← | 23S rRNA m(2)G1835 methyltransferase |
| RA | 3,245,619 | T→C | R132R (CGT→CGC) | exuT → | hexuronate transporter |
| RA | 3,277,706 | (A)7→6 | coding (370/465 nt) | yhaV → | ribosome‑dependent mRNA interferase toxin YhaV |
| RA | 3,281,723 | T→C | intergenic (+98/‑253) | agaA → / → agaS | putative truncated N‑acetylgalactosamine‑6‑phosphate deacetylase/putative galactosamine‑6‑phosphate deaminase/isomerase |
| RA | 3,291,892 | T→C | D184D (GAT→GAC) | yraK → | putative fimbrial adhesin YraK |
| RA | 3,296,380 | T→C | F191S (TTC→TCC) | diaA → | DnaA initiator‑associating factor for replication initiation |
| RA | 3,339,332 | T→C | D245G (GAC→GGC) | mlaF ← | intermembrane phospholipid transport system, ATP binding subunit MlaF |
| RA | 3,339,365 | G→A | A234V (GCG→GTG) | mlaF ← | intermembrane phospholipid transport system, ATP binding subunit MlaF |
| RA | 3,350,184 | (C)7→8 | coding (276/654 nt) | elbB ← | low activity glyoxalase ElbB |
| RA | 3,351,288 | G→A | P580S (CCA→TCA) | arcB ← | sensory histidine kinase ArcB |
| RA | 3,353,474 | G→A | Q193* (CAG→TAG) | yhcC ← | radical SAM family oxidoreductase YhcC |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,355,029 | T→C | V102A (GTT→GCT) | gltB → | glutamate synthase subunit GltB |
| RA | 3,387,408 | T→C | T261A (ACG→GCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,394,828 | G→A | A477A (GCC→GCT) | yhdP ← | AsmA2 domain‑containing protein |
| RA | 3,404,716 | G→A | intergenic (+258/‑720) | yhdH → / → accB | acrylyl‑CoA reductase/biotin carboxyl carrier protein |
| RA | 3,410,733 | G→A | E152K (GAA→AAA) | dusB → | tRNA‑dihydrouridine synthase B |
| RA | 3,421,762 | (T)7→8 | coding (438/1104 nt) | yhdY → | putative ABC transporter membrane subunit YhdY |
| RA | 3,461,111 | T→C | V30A (GTT→GCT) | gspG → | Type II secretion system protein GspG |
| RA | 3,511,721 | T→C | E208E (GAA→GAG) | yhfZ ← | putative DNA‑binding transcriptional regulator YhfZ |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,573,145 | G→A | R120C (CGC→TGC) | glgB ← | 1,4‑alpha‑glucan branching enzyme |
| RA | 3,605,975 | T→C | R75R (CGT→CGC) | yhhN → | conserved inner membrane enzyme YhhN |
| RA | 3,639,218 | G→A | intergenic (+77/+167) | pitA → / ← uspB | metal phosphate:H(+) symporter PitA/putative universal stress (ethanol tolerance) protein B |
| RA | 3,639,879 | (T)8→7 | intergenic (‑159/‑232) | uspB ← / → uspA | putative universal stress (ethanol tolerance) protein B/universal stress global stress response regulator |
| RA | 3,728,118 | (C)8→7 | coding (1254/1455 nt) | xylB ← | xylulokinase |
| RA | 3,743,852 | T→C | V37A (GTT→GCT) | yiaL → | DUF386 domain‑containing protein YiaL |
| RA | 3,756,719 | G→A | A370V (GCA→GTA) | yiaY ← | L‑threonine dehydrogenase |
| RA | 3,771,784 | C→T | intergenic (‑40/‑497) | yibI ← / → mtlA | DUF3302 domain‑containing protein YibI/mannitol‑specific PTS enzyme IICBA component |
| RA | 3,802,488 | T→C | T191A (ACT→GCT) | waaO ← | UDP‑D‑glucose:(glucosyl)LPS alpha‑1,3‑glucosyltransferase |
| RA | 3,814,439 | G→A | intergenic (+52/‑55) | dut → / → slmA | deoxyuridine triphosphatase/nucleoid occlusion factor SlmA |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,894,996 | C→T | T115T (ACC→ACT) | yieF → | chromate reductase |
| RA | 3,900,259 | T→C | S107G (AGC→GGC) | yieL ← | putative hydrolase YieL |
| RA | 3,939,203 | A→G | E326G (GAA→GGA) V470V (GTT→GTC) |
rbsR → hsrA ← |
DNA‑binding transcriptional dual regulator RbsR putative transporter HsrA |
| RA | 3,970,324 | A→G | G64G (GGA→GGG) | wecB → | UDP‑N‑acetylglucosamine 2‑epimerase |
| RA | 3,997,902 | A→G | intergenic (+3/‑81) | yigB → / → uvrD | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase/ssDNA translocase and dsDNA helicase ‑ DNA helicase II |
| RA | 4,084,422 | G→A | Y467Y (TAC→TAT) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,099,985 | A→G | C181R (TGC→CGC) | rhaT ← | rhamnose/lyxose:H(+) symporter |
| RA | 4,116,076 | C→T | E383K (GAG→AAG) | glpK ← | glycerol kinase |
| RA | 4,126,671 | A→G | V47A (GTA→GCA) | priA ← | primosome factor N' |
| RA | 4,148,286 | C→T | R11H (CGC→CAC) | yijO ← | putative DNA‑binding transcriptional regulator YijO |
| RA | 4,168,420 | A→G | noncoding (49/76 nt) | gltT → | tRNA‑Glu |
| RA | 4,198,529 | A→G | T272A (ACA→GCA) | hemE → | uroporphyrinogen decarboxylase |
| RA | 4,246,520 | C→T | intergenic (‑101/‑264) | malE ← / → malK | maltose ABC transporter periplasmic binding protein/maltose ABC transporter ATP binding subunit |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,361,448 | (A)8→7 | coding (487/1539 nt) | cadC ← | DNA‑binding transcriptional activator CadC |
| RA | 4,366,861 | T→C | intergenic (‑88/+30) | dcuA ← / ← aspA | C4‑dicarboxylate transporter DcuA/aspartate ammonia‑lyase |
| RA | 4,419,626 | C→T | intergenic (‑1/‑354) | ulaG ← / → ulaA | L‑ascorbate‑6‑phosphate lactonase/L‑ascorbate specific PTS enzyme IIC component |
| RA | 4,435,918 | A→G | G216G (GGT→GGC) | cpdB ← | 2'3' cyclic nucleotide phosphodiesterase/3' nucleotidase |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,455,998 | A→C | T72P (ACC→CCC) | mpl → | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| RA | 4,490,370 | A→G | L257P (CTG→CCG) | idnR ← | DNA‑binding transcriptional dual regulator IdnR |
| RA | 4,569,605 | A→G | pseudogene (608/921 nt) | rpnD → | truncated recombination‑promoting nuclease‑like protein RpnD |
| RA | 4,606,216 | A→G | noncoding (71/87 nt) | leuP ← | tRNA‑Leu |
| RA | 4,628,442 | C→T | L376L (CTC→CTT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,639,714 | T→C | D198G (GAC→GGC) | arcA ← | DNA‑binding transcriptional dual regulator ArcA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423766–3424234 | 3424525–3424239 | 6–760 | 20 [16] | [15] 22 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 12 (0.170) | 68 (1.070) | 44/242 | 0.2 | 85.8% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 12 (0.190) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 12 (0.170) | 42 (0.660) | 37/242 | 0.5 | 78.8% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 12 (0.190) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 75 (1.080) | 52/266 | 0.2 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 107 (1.490) | 93 (1.310) | 60/272 | 0.1 | 63.0% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 3 (0.040) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 92 (1.280) | 52/274 | 0.2 | 97.9% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 2 (0.030) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||