Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F48 I1 R1
|
62 |
147.6 |
5031800 |
99.1% |
4986513 |
139.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,559,527 |
G→T |
T420T (ACG→ACT) |
rtcR → |
DNA‑binding transcriptional activator RtcR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,559,527 | 0 | G | T | 99.1%
| 389.1
/ ‑3.6
| 110 | T420T (ACG→ACT) | rtcR | DNA‑binding transcriptional activator RtcR |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (49/60); total (49/61) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 114 total aligned reads displayed.
AAGTGGAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACGCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTCCGCGCTTACGGCGTTGCTGGGCGCAGAGGCAGAAA > NC_000913/3559391‑3559660
|
aaGTGGAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCgg > 2:2235399/1‑140 (MQ=255)
aaGTGGAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCgg > 1:666871/1‑140 (MQ=255)
aaGTGGAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGCAACTTTCGCGTACTTTCTGCCAGCGTCACTCgg > 1:2106389/1‑140 (MQ=255)
tGGAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATg > 2:823980/1‑140 (MQ=255)
ggAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATgg > 1:2120597/1‑140 (MQ=255)
ggAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATgg < 1:541488/140‑1 (MQ=255)
gAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGc < 2:1152842/140‑1 (MQ=255)
gAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGc < 1:1691596/140‑1 (MQ=255)
aGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGcc > 2:268685/1‑140 (MQ=255)
gcgcCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCa < 1:1243133/140‑1 (MQ=255)
gcgcCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCa < 1:1973297/140‑1 (MQ=255)
cgcCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCAc > 1:87796/1‑140 (MQ=255)
cgcCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCAc > 1:454259/1‑140 (MQ=255)
cgcCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCAc > 2:1126902/1‑140 (MQ=255)
ccACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGACCACCt > 2:2028027/1‑140 (MQ=255)
cGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTg > 1:2245341/1‑140 (MQ=255)
ctcactcaCTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCa < 2:145006/140‑1 (MQ=255)
ctcactcaCTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCa < 2:1035468/140‑1 (MQ=255)
cactGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCg > 2:2214018/1‑140 (MQ=255)
actGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCgg < 2:1837531/140‑1 (MQ=255)
actGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTACCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCgg < 2:2315378/140‑1 (MQ=255)
ctGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGa < 1:387969/140‑1 (MQ=255)
ctGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGa > 1:674539/1‑140 (MQ=255)
ggCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACg > 2:316058/1‑140 (MQ=255)
ggCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACg > 1:1392109/1‑140 (MQ=255)
cGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGTCCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCa < 1:38872/140‑1 (MQ=255)
cGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCa < 1:2412309/140‑1 (MQ=255)
cGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCa < 2:1836590/140‑1 (MQ=255)
cGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCa < 1:1126902/140‑1 (MQ=255)
agACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCa < 2:661622/139‑1 (MQ=255)
gACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCAt < 2:1940260/140‑1 (MQ=255)
gACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCAt < 2:1372522/140‑1 (MQ=255)
gACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCAt < 2:1790771/140‑1 (MQ=255)
gACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCAt < 2:1256755/140‑1 (MQ=255)
gACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCAt < 1:2141306/140‑1 (MQ=255)
aCAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATc > 1:78617/1‑140 (MQ=255)
aCAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATc > 1:267624/1‑140 (MQ=255)
gcgtgcgtTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATctct < 2:508681/140‑1 (MQ=255)
gcgtgcgtTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCAct < 1:1150935/140‑1 (MQ=255)
gcgtTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTgg > 1:2430825/1‑140 (MQ=255)
gcgtTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTgg > 1:125654/1‑140 (MQ=255)
cgtTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGa < 2:1080004/140‑1 (MQ=255)
gtTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGAc < 2:83642/140‑1 (MQ=255)
gtTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGAc < 1:748805/140‑1 (MQ=255)
ttttAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCAGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACg < 2:1392109/140‑1 (MQ=255)
acacCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGtt < 1:1259885/140‑1 (MQ=255)
aacCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTg < 2:125654/139‑1 (MQ=255)
cGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAg < 2:674539/140‑1 (MQ=255)
cGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAg < 1:1443479/140‑1 (MQ=255)
cGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAg < 1:1682701/140‑1 (MQ=255)
cGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAg < 2:2245341/140‑1 (MQ=255)
aaGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCAct < 1:2197027/122‑1 (MQ=255)
aaGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCAct > 2:2197027/1‑122 (MQ=255)
aaGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGAt > 2:178167/1‑140 (MQ=255)
aaGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGAt > 2:568704/1‑140 (MQ=255)
aaGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGAt > 1:1013512/1‑140 (MQ=255)
aaGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGAt > 2:95762/1‑140 (MQ=255)
aaGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGAt > 1:796879/1‑140 (MQ=255)
aaGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGAt > 1:1871274/1‑140 (MQ=255)
cggcgcgCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGAt > 1:1224989/1‑140 (MQ=255)
cggcgcgCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGAt > 1:1613406/1‑140 (MQ=255)
gcgcgcCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATaa > 2:2123325/1‑140 (MQ=255)
cgcgcCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATaaa > 2:2469645/1‑140 (MQ=255)
cgcgcCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATaaa > 1:36608/1‑140 (MQ=255)
ccTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGt < 2:1339622/140‑1 (MQ=255)
ccTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGt < 1:178167/140‑1 (MQ=255)
ccTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGt < 2:610879/140‑1 (MQ=255)
ccTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGt < 2:560476/140‑1 (MQ=255)
ccTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGt < 1:2469645/140‑1 (MQ=255)
acTGGTTCGCTTTTGCGTCCTCTCCCCAGGCAACATGGCGCGGTAAATTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCAATGCCAATAGCGGACGCATCAATCTAGACGTGGTTGAAGATGAGATaatcagt < 2:2430825/139‑6 (MQ=255)
cTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTc < 1:268685/140‑1 (MQ=255)
cTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACATGGTTGAAGATGAGATAAACCGTc < 1:2235399/140‑1 (MQ=255)
cTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTCTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTc < 2:2117016/140‑1 (MQ=255)
ggTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGACCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTg < 1:2028027/140‑1 (MQ=255)
ttGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTgcg < 2:1013512/140‑1 (MQ=255)
ttGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTgcg < 2:78617/140‑1 (MQ=255)
ttGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTgcg < 2:796879/140‑1 (MQ=255)
ttGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTgcg < 1:2165505/140‑1 (MQ=255)
ttttGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCtata < 1:1674841/140‑1 (MQ=255)
tGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACt > 2:1933974/1‑140 (MQ=255)
tGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACt < 1:1933974/140‑1 (MQ=255)
ccTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAg < 2:2253955/140‑1 (MQ=255)
ccAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGCCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAgcc > 1:2190075/1‑140 (MQ=255)
gCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGccc > 2:5910/1‑140 (MQ=255)
gCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGccc > 2:879976/1‑140 (MQ=255)
aCATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTc > 2:356473/1‑140 (MQ=255)
aCATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTc < 1:2083354/140‑1 (MQ=255)
aCATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTc > 1:594062/1‑140 (MQ=255)
cATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTcc > 1:2242553/1‑140 (MQ=255)
aTGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTCcg > 1:1090933/1‑140 (MQ=255)
aTGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATCGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTCcg > 1:919474/1‑140 (MQ=255)
gcgGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTCGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTCCGCGCtt > 2:1625627/1‑140 (MQ=255)
cgGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTCCGCGCTTa > 1:2332090/1‑140 (MQ=255)
cgGTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTCAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTCCGCGCTTa < 2:87796/140‑1 (MQ=255)
gTAACTTTCGCGAACTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTCCGCGCTTACg < 2:1677571/140‑1 (MQ=255)
aCTTTAGCGAACTTTCTGTCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTCCGCGCTTACGGCg < 2:1871274/140‑1 (MQ=255)
ttCGCGAACTTTATGCCAGCGTCACGCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGAAGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGGGCCGCCCCTCCGCGCTTACGGCGTTg < 2:2433714/140‑1 (MQ=255)
cTTTCTGCCAGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTCCGCGCTTACGGCGTTGCTGGgcgc < 2:2141800/140‑1 (MQ=255)
aGCGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTCCGCGCTTACGGCGTTGCTGGGCGCAGAGGCAGa < 2:2190075/140‑1 (MQ=255)
cGTCACTCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTCCGCGCTTACGGCGTTGCTGGGCGCAGAGGCAGaaa > 2:307886/1‑140 (MQ=255)
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AAGTGGAGCGCCACGCCTCACTCACTGGCGACAGCGTGCGTTTTAACACCGAAGCGCGGCGCGCCTGGTTGGCTTTTGCGACCTCTCCCCAGGCAACATGGCGCGGTAACTTTCGCGAACTTTCTGCCAGCGTCACGCGGATGGCCACCTTTGCCACTAGCGGACGCATCACTCTGGACGTGGTTGAAGATGAGATAAACCGTCTGCGCTATAACTGGCAGGAGAGCCGCCCCTCCGCGCTTACGGCGTTGCTGGGCGCAGAGGCAGAAA > NC_000913/3559391‑3559660
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
