Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F48 I1 R1	62	147.6	5031800	99.1%	4986513	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,311,497	G→T	F182L (TTC→TTA)	alsB ←	D‑allose ABC transporter periplasmic binding protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,311,497	0	G	T	100.0%	334.5 / NA	94	F182L (TTC→TTA)	alsB	D‑allose ABC transporter periplasmic binding protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (47/47); total (47/47)

ATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTGAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGCCCCGACAGCA  >  NC_000913/4311363‑4311629

aTCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGTATTACGTTGCAACACGTTAGTGGGGTCATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACCAGCTTGATCTGGCTTGCTTTTTGTAAGGc                                                                                                                                 >  1:2363639/1‑140 (MQ=255)

aTCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGc                                                                                                                                 >  1:704172/1‑140 (MQ=255)

  cGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCtt                                                                                                                               >  2:1860499/1‑140 (MQ=255)

  cGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCtt                                                                                                                               >  2:2134093/1‑140 (MQ=255)

      tCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGt                                                                                                                           <  1:1336137/140‑1 (MQ=255)

      tCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGt                                                                                                                           >  1:323769/1‑140 (MQ=255)

      tCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGCGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGt                                                                                                                           >  2:1848742/1‑140 (MQ=255)

        aTTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTgg                                                                                                                         <  2:323769/140‑1 (MQ=255)

        aTTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTgg                                                                                                                         <  2:2254619/140‑1 (MQ=255)

        aTTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTgg                                                                                                                         >  1:1698004/1‑140 (MQ=255)

        aTTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTgg                                                                                                                         >  1:2265672/1‑140 (MQ=255)

        aTTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTgg                                                                                                                         >  2:469106/1‑140 (MQ=255)

        aTTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTgg                                                                                                                         <  1:1442032/140‑1 (MQ=255)

        aTTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTgg                                                                                                                         <  2:704172/140‑1 (MQ=255)

        aTTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTgg                                                                                                                         <  2:1126238/140‑1 (MQ=255)

          tCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCa                                                                                                                       <  1:2262608/140‑1 (MQ=255)

          tCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGATAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCa                                                                                                                       <  2:1958240/140‑1 (MQ=255)

            gcgcAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCAcc                                                                                                                     <  2:2205821/140‑1 (MQ=255)

             cgcAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCa                                                                                                                    >  2:350086/1‑140 (MQ=255)

             cgcAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCa                                                                                                                    >  1:1050892/1‑140 (MQ=255)

             cgcAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGACTTGCTTTTTTTAAGGCTTCGGTGGCACCa                                                                                                                    >  2:2376908/1‑140 (MQ=255)

              gcAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCAt                                                                                                                   <  1:1969283/140‑1 (MQ=255)

              gcAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCAt                                                                                                                   >  2:155609/1‑140 (MQ=255)

                     aTCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTacgacg                                                                                                            <  2:488528/140‑1 (MQ=255)

                     aTCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTacgacg                                                                                                            <  1:2412735/140‑1 (MQ=255)

                        gCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACgcgc                                                                                                         <  2:742846/140‑1 (MQ=255)

                        gCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACgcgc                                                                                                         <  2:435637/140‑1 (MQ=255)

                            tAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTacgacg                                                                                                            >  1:2016588/1‑133 (MQ=255)

                            tAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTacgacg                                                                                                            <  2:2016588/133‑1 (MQ=255)

                            tAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCa                                                                                                     >  1:827064/1‑140 (MQ=255)

                               tatTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCg                                                                                                  <  1:1860499/140‑1 (MQ=255)

                                atTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCgg                                                                                                 <  1:1386804/140‑1 (MQ=255)

                                 ttCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGa                                                                                                <  1:1848742/140‑1 (MQ=255)

                                    ggATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAg                                                                                               >  2:1232011/1‑138 (MQ=255)

                                    ggATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAg                                                                                               <  1:1232011/138‑1 (MQ=255)

                                    ggATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGc                                                                                             >  2:90905/1‑140 (MQ=255)

                                    ggATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGc                                                                                             >  1:1832692/1‑140 (MQ=255)

                                              gCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCt                                                                                   >  2:2433112/1‑140 (MQ=255)

                                               cAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCtt                                                                                  <  1:350086/140‑1 (MQ=255)

                                               cAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCtt                                                                                  >  2:889174/1‑140 (MQ=255)

                                               cAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCtt                                                                                  <  2:1698004/140‑1 (MQ=255)

                                                 acacGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTa                                                                                <  1:90905/140‑1 (MQ=255)

                                                 acacGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTa                                                                                <  2:1866139/140‑1 (MQ=255)

                                                         gTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAAt                                                                        >  2:141837/1‑140 (MQ=255)

                                                            gCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGAt                                                                     >  2:122063/1‑140 (MQ=255)

                                                              gACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTg                                                                   >  1:1339493/1‑140 (MQ=255)

                                                              gACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTg                                                                   >  1:580642/1‑140 (MQ=255)

                                                               aCATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGc                                                                  <  1:889174/140‑1 (MQ=255)

                                                               aCATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGc                                                                  >  1:1601137/1‑140 (MQ=255)

                                                               aCATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGc                                                                  >  1:172306/1‑140 (MQ=255)

                                                                cATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCg                                                                 <  1:469106/140‑1 (MQ=255)

                                                                  tCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGAc                                                               <  1:2153865/140‑1 (MQ=255)

                                                                   ccAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACt                                                              <  2:1832692/140‑1 (MQ=255)

                                                                   ccAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACt                                                              <  1:2134093/140‑1 (MQ=255)

                                                                     aGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTc                                                            <  1:1471955/140‑1 (MQ=255)

                                                                         cTTTAATGCGGTCCCAGTCGGCAGTCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCTGCTTTACCCTCAATGATTGCGACTTcacca                                                        >  2:2394677/1‑140 (MQ=255)

                                                                         cTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTcacca                                                        >  2:1927024/1‑140 (MQ=255)

                                                                              aTGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTc                                                   >  2:357984/1‑140 (MQ=255)

                                                                                 cGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAgc                                                >  2:982877/1‑140 (MQ=255)

                                                                                 cGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAgc                                                >  1:2087226/1‑140 (MQ=255)

                                                                                  ggTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAgcg                                               <  2:1601137/140‑1 (MQ=255)

                                                                                  ggTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAgcg                                               <  1:1051210/140‑1 (MQ=255)

                                                                                  ggTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAgcg                                               <  1:122063/140‑1 (MQ=255)

                                                                                  ggTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAgcg                                               <  1:141837/140‑1 (MQ=255)

                                                                                   gTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAgcgc                                              >  2:131923/1‑140 (MQ=255)

                                                                                   gTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAgcgc                                              >  2:47986/1‑140 (MQ=255)

                                                                                   gTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAgcgc                                              >  2:245830/1‑140 (MQ=255)

                                                                                         gTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGTGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAAtt                                        >  1:2461953/1‑140 (MQ=255)

                                                                                            ggCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCATTTTGt                                     <  2:2265672/140‑1 (MQ=255)

                                                                                            ggCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGt                                     <  1:155609/140‑1 (MQ=255)

                                                                                              cAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGt                                     >  2:279445/1‑138 (MQ=255)

                                                                                              cAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGt                                     <  1:279445/138‑1 (MQ=255)

                                                                                              cAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCa                                   >  1:322530/1‑140 (MQ=255)

                                                                                              cAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCa                                   >  1:1502217/1‑140 (MQ=255)

                                                                                              cAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCa                                   <  1:1927024/140‑1 (MQ=255)

                                                                                              cAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCa                                   >  1:2218813/1‑140 (MQ=255)

                                                                                              cAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCa                                   >  2:2328767/1‑140 (MQ=255)

                                                                                              cAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCa                                   <  1:2433112/140‑1 (MQ=255)

                                                                                              cAGGCTGGCTGGCGACAAGCTTGATCTGACTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCa                                   <  1:2376908/140‑1 (MQ=255)

                                                                                                    ggctggcGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATg                             >  1:2100426/1‑140 (MQ=255)

                                                                                                          cGACAAGCTTGATCTGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAacgac                       >  1:1073471/1‑140 (MQ=255)

                                                                                                                        tGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGcccc         >  2:693604/1‑140 (MQ=255)

                                                                                                                        tGGCTTGCTTTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGcccc         <  1:1538496/140‑1 (MQ=255)

                                                                                                                           cttgcttTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGCCCCGAc      <  2:688050/140‑1 (MQ=255)

                                                                                                                           cttgcttTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGCCCCGAc      >  2:8491/1‑140 (MQ=255)

                                                                                                                           cttgcttTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTAACGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGCCCCGAc      >  2:958171/1‑140 (MQ=255)

                                                                                                                              gcttTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCCCCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGCCCCGACAGc   <  2:1050892/140‑1 (MQ=255)

                                                                                                                              gcttTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGCCCCGACAGc   <  1:245830/140‑1 (MQ=255)

                                                                                                                              gcttTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGCCCCGACAGc   <  2:1073471/140‑1 (MQ=255)

                                                                                                                              gcttTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGCCCCGACAGc   <  1:131923/140‑1 (MQ=255)

                                                                                                                              gcttTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGCCCCGACAGc   <  1:1786205/140‑1 (MQ=255)

                                                                                                                              gcttTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGCCCCGACAGc   <  2:322530/140‑1 (MQ=255)

                                                                                                                               cttTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGCCCCGACAGCa  >  1:993807/1‑140 (MQ=255)

                                                                                                                               cttTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGCCCCGACAGCa  >  1:1864231/1‑140 (MQ=255)

                                                                                                                               cttTTTTTAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGCCCCGACAGCa  >  1:2263617/1‑140 (MQ=255)

ATCGTGTCATTCGCGCAATAGATCGCTTTAATATTCGGATTACGTTGCAACACGTTAGTGGCGACATCCAGTGCTTTAATGCGGTCCCAGTCGGCAGGCTGGCTGGCGACAAGCTTGATCTGGCTTGCTTTTTTGAAGGCTTCGGTGGCACCATTACGACGCGCTTCACCGGAGGCGTTACCGGCTTTACCCTCAATGATTGCGACTTCACCACCTTCAGCGCCCAATTTGTCAATAATGAACGACGCGCCTTTCGCCCCGACAGCA  >  NC_000913/4311363‑4311629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A