Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F48 I1 R1
|
75 |
141.5 |
4784044 |
99.1% |
4740987 |
139.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,946,604 |
C→A |
noncoding (2901/2904 nt) |
rrlC → |
23S ribosomal RNA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,946,604 | 0 | C | A | 100.0%
| 265.7
/ NA
| 105 | noncoding (2901/2904 nt) | rrlC | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (60/45); total (60/45) |
Only 100 of 107 total aligned reads displayed.
ATGAGTTCTCCCTGACTCCTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCC > NC_000913/3946481‑3946737
|
aTGAGTTCTCCCTGACTCCTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGa > 2:1659635/1‑140 (MQ=11)
tcCCTGACTCCTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTgg < 2:1385363/140‑1 (MQ=18)
tcCCTGACTCCTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTgg < 2:894942/140‑1 (MQ=18)
tcCCTGACTCCTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTgg < 1:1597233/140‑1 (MQ=17)
tcCCTGACTCCTTGAGAGTCCTGAAGGAACGTTAAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTgg < 2:457723/140‑1 (MQ=18)
ccTGACTCCTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCg > 2:2065159/1‑140 (MQ=17)
cTGACTCCTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCgg < 2:1333491/140‑1 (MQ=17)
cTGACTCCTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCgg < 1:1326303/140‑1 (MQ=18)
tGACTCCTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCAGa < 2:1210272/140‑1 (MQ=17)
gACTCCTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGAt > 1:1909430/1‑140 (MQ=17)
gACTCCTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGAt > 2:479409/1‑140 (MQ=17)
aCTCCTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATg > 1:1039193/1‑140 (MQ=18)
cTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATgagag > 2:2145082/1‑140 (MQ=37)
cTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATgagag > 1:1345949/1‑140 (MQ=37)
cTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATgagag > 1:1236312/1‑140 (MQ=37)
cTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATgagag > 1:2383675/1‑140 (MQ=37)
cTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATgagag > 2:1796596/1‑140 (MQ=37)
tGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGagaa > 1:1652205/1‑140 (MQ=37)
agTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGAtt > 1:12773/1‑140 (MQ=18)
tCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAGGCGCAGTGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTATACTTACAACGCCGAAGATGTTTTGGCGGATGAGTGAAGAtttt > 2:1780636/1‑140 (MQ=11)
tCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGAtttt > 1:1933084/1‑140 (MQ=17)
tCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGAtttt < 1:1796596/140‑1 (MQ=18)
tCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGAtttt > 2:426437/1‑140 (MQ=17)
tCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGAtttt > 1:64230/1‑140 (MQ=17)
tCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGAtttt < 2:2287163/140‑1 (MQ=18)
tCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGAtttt < 2:2300844/140‑1 (MQ=18)
tCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGAtttt > 1:1099995/1‑140 (MQ=17)
tCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGAtttt < 2:2321564/140‑1 (MQ=18)
tCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGCGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACATCGCCTAAGATGTTTTGGCGGATGAGAGAAGAtttt > 2:266724/1‑140 (MQ=255)
tCCTGAAGGAACGTTCATGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGAtttt > 1:2245996/1‑140 (MQ=12)
cTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCa > 2:1085348/1‑140 (MQ=17)
cTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCa > 1:36071/1‑140 (MQ=17)
aaGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGcc < 2:2383675/140‑1 (MQ=18)
aaGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGcc > 2:2068835/1‑140 (MQ=17)
gAACGTTAAAGACGACGAGGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGa > 1:1562109/1‑140 (MQ=12)
aCGTTGAATACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATa < 1:1523493/140‑1 (MQ=17)
aCGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATa > 1:334400/1‑140 (MQ=17)
aCGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATa < 1:479409/140‑1 (MQ=18)
aCGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATa > 1:633855/1‑140 (MQ=17)
aCGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATa < 2:12773/140‑1 (MQ=18)
aCGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATa < 2:1165349/140‑1 (MQ=17)
aCGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATa > 2:809610/1‑140 (MQ=17)
aCGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATa < 2:1345949/140‑1 (MQ=18)
cGTTGAAGACGTCGACGTTGATAGGCCGGTTGTGTAAGCGCAGTAATGCGTGGAGCTAAGCGGTACTAATGACCCGTGAGGCTTAAACTTACAACGCCGACGATGTTTTGGCGGATGAGCGAAGATTTTCAGCCTGATAc > 2:245456/1‑140 (MQ=11)
gTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACa > 2:1109085/1‑140 (MQ=17)
gAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGAtttt > 1:1061834/1‑125 (MQ=17)
gAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGAtttt < 2:1061834/125‑1 (MQ=18)
gAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGAt < 2:1652205/140‑1 (MQ=17)
gAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGAt > 2:1405069/1‑140 (MQ=17)
aGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTa < 2:64230/140‑1 (MQ=17)
cgacgacgTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAAt < 2:651025/140‑1 (MQ=18)
acgacgTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCa < 2:120351/140‑1 (MQ=18)
acgacgTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCa < 2:1909430/140‑1 (MQ=18)
acgacgTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCa < 1:707628/140‑1 (MQ=18)
acgacgTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCa < 2:1659029/140‑1 (MQ=17)
acgacgTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCa < 1:1934263/140‑1 (MQ=18)
cgacgTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAg > 2:2191009/1‑140 (MQ=17)
cgacgTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAg < 1:809610/140‑1 (MQ=18)
cgTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAAc > 1:1468800/1‑140 (MQ=17)
tGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCa < 2:1421668/140‑1 (MQ=17)
aTAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGa > 1:253061/1‑140 (MQ=17)
aGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAg < 2:1864915/140‑1 (MQ=17)
gCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTGACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCg > 2:2276394/1‑140 (MQ=17)
gggTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTc > 1:357800/1‑140 (MQ=17)
ggTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCt > 1:415606/1‑140 (MQ=17)
tgtgtAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtga < 2:1236312/140‑1 (MQ=17)
tgtgtAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtga < 1:438429/140‑1 (MQ=17)
tAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaa > 1:2311143/1‑140 (MQ=21)
aaGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaaa < 1:1381884/140‑1 (MQ=25)
cgcAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAg > 2:1866380/1‑140 (MQ=21)
cAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGaa > 2:333063/1‑140 (MQ=21)
aGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAt > 2:624315/1‑140 (MQ=21)
gCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAtt > 1:1513552/1‑140 (MQ=21)
gCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCt < 2:1933084/140‑1 (MQ=21)
cGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTg > 2:2054992/1‑140 (MQ=21)
gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTgg < 1:2068835/140‑1 (MQ=25)
ttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggc < 1:333063/140‑1 (MQ=25)
aGCTAACCGGTACTAATGAACCGTGAGGCTTAAACTTACTACGCCGAAGATGTTTGGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcggc > 1:1566494/1‑140 (MQ=255)
aCCGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAg > 2:2316654/1‑140 (MQ=21)
acGGTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAgc < 2:173993/139‑1 (MQ=25)
ggTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAgcgc < 2:2213047/140‑1 (MQ=21)
gTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGcgcg < 1:1780636/140‑1 (MQ=21)
gTACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGcgcg < 2:1769519/140‑1 (MQ=21)
tACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCgg > 1:259486/1‑140 (MQ=21)
tACTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCgg > 1:2202137/1‑140 (MQ=21)
aCTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCggt < 2:2311143/140‑1 (MQ=21)
cTAATGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCggtg > 2:1056234/1‑140 (MQ=21)
aTGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc > 2:2212892/1‑140 (MQ=21)
tGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGTCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTcc < 1:2029145/140‑1 (MQ=21)
tGAACCGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTcc < 2:257594/140‑1 (MQ=21)
ccGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc > 2:743529/1‑140 (MQ=21)
ccGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc > 2:905463/1‑140 (MQ=21)
ccGTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc > 2:605155/1‑140 (MQ=21)
gTGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTg > 2:1045625/1‑140 (MQ=21)
tGAGGCTTAAACTTACAGCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGa > 2:1292856/1‑140 (MQ=255)
tGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGa > 2:643717/1‑140 (MQ=21)
tGAGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGa > 1:2283761/1‑140 (MQ=21)
aGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAcc < 1:2242790/140‑1 (MQ=21)
aGGCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAcc > 1:898795/1‑140 (MQ=21)
gCTTAAACTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAcccc < 2:898795/140‑1 (MQ=21)
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ATGAGTTCTCCCTGACTCCTTGAGAGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCC > NC_000913/3946481‑3946737
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
