Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F48 I1 R1 115 87.5 3003888 99.1% 2976853 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,553,699 C→A A205A (GCC→GCA)  malT → DNA‑binding transcriptional activator MalT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,553,6990CA98.4% 216.6 / ‑3.6 62A205A (GCC→GCA) malTDNA‑binding transcriptional activator MalT
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base A (25/36);  total (25/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01

AACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCCGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATGCCAGCC  >  NC_000913/3553565‑3553832
                                                                                                                                      |                                                                                                                                     
aaCCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGa                                                                                                                                  <  1:335558/140‑1 (MQ=255)
  acTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGaaa                                                                                                                                <  2:561258/139‑1 (MQ=255)
       cGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGt                                                                                                                           <  1:67133/140‑1 (MQ=255)
       cGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGt                                                                                                                           >  2:251648/1‑140 (MQ=255)
            cTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGAt                                                                                                                      <  1:837556/140‑1 (MQ=255)
            cTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGAt                                                                                                                      >  1:475645/1‑140 (MQ=255)
                gCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGc                                                                                                                  >  2:772567/1‑140 (MQ=255)
                   ttGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGAt                                                                                                               <  1:284165/140‑1 (MQ=255)
                    tGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATg                                                                                                              <  1:1311913/140‑1 (MQ=255)
                    tGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATg                                                                                                              <  1:1317371/140‑1 (MQ=255)
                         aTCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGtt                                                                                                         >  2:93508/1‑140 (MQ=255)
                         aTCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGtt                                                                                                         >  1:1161795/1‑140 (MQ=255)
                               gtgtTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGt                                                                                                   >  2:271599/1‑140 (MQ=255)
                                tgtTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGtt                                                                                                  >  2:301649/1‑140 (MQ=255)
                                tgtTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGtt                                                                                                  >  1:1119563/1‑140 (MQ=255)
                                    cGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGc                                                                                              >  1:117371/1‑140 (MQ=255)
                                      tGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGa                                                                                            <  1:251648/140‑1 (MQ=255)
                                      tGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGa                                                                                            <  2:571277/140‑1 (MQ=255)
                                      tGATAAACTGCTGGAAATTGGCAATCAGCATCTGGAATTTACCCAACAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGa                                                                                            <  2:647801/140‑1 (MQ=255)
                                         tCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACgg                                                                                         <  2:167766/140‑1 (MQ=255)
                                           aaCTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCa                                                                                       <  2:103708/140‑1 (MQ=255)
                                            aCTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCAc                                                                                      >  1:1085142/1‑140 (MQ=255)
                                                   gAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCt                                                                               >  1:1011326/1‑140 (MQ=255)
                                                     aaTTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTaa                                                                             >  1:518761/1‑140 (MQ=255)
                                                        tGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCg                                                                          <  2:1061463/140‑1 (MQ=255)
                                                        tGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCg                                                                          <  1:451146/140‑1 (MQ=255)
                                                          gCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGcc                                                                        >  2:207234/1‑140 (MQ=255)
                                                          gCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGcc                                                                        >  2:186527/1‑140 (MQ=255)
                                                                 gCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCg                                                                 <  2:429336/140‑1 (MQ=255)
                                                                 gCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCg                                                                 <  1:1483215/140‑1 (MQ=255)
                                                                       ggCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCCGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGc                                                           <  2:654737/140‑1 (MQ=255)
                                                                       ggCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGAGTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGc                                                           <  2:1085142/140‑1 (MQ=255)
                                                                         cATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAg                                                         <  1:772567/140‑1 (MQ=255)
                                                                         cATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAg                                                         <  1:112758/140‑1 (MQ=255)
                                                                             tACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATa                                                     <  2:1011326/140‑1 (MQ=255)
                                                                             tACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATa                                                     <  2:196278/140‑1 (MQ=255)
                                                                              aCCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATAc                                                    <  1:160124/140‑1 (MQ=255)
                                                                                  aTCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCAc                                                >  2:832475/1‑140 (MQ=255)
                                                                                  aTCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCAc                                                >  2:1222973/1‑140 (MQ=255)
                                                                                   tCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACt                                               <  1:795526/140‑1 (MQ=255)
                                                                                   tCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACt                                               <  2:284765/140‑1 (MQ=255)
                                                                                   tCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACt                                               <  2:789301/140‑1 (MQ=255)
                                                                                   tCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACt                                               <  1:449262/140‑1 (MQ=255)
                                                                                   tCAGGAAGCGAAGCAGATTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACt                                               >  2:939720/1‑140 (MQ=255)
                                                                                     aGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCTCCCGGCAGAATACCCACTCa                                             <  1:1377904/140‑1 (MQ=255)
                                                                                     aGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCa                                             <  2:294212/140‑1 (MQ=255)
                                                                                       gaagcgaagcAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACt                                               <  1:86156/136‑1 (MQ=255)
                                                                                       gaagcgaagcAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACt                                               >  2:86156/1‑136 (MQ=255)
                                                                                              agcAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATaat                                    >  2:1190148/1‑139 (MQ=255)
                                                                                              agcAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATaat                                    >  2:614455/1‑139 (MQ=255)
                                                                                              agcAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAg                                    >  2:722289/1‑140 (MQ=255)
                                                                                              agcAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAg                                    >  1:28104/1‑140 (MQ=255)
                                                                                               acAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGt                                   <  2:584612/139‑1 (MQ=255)
                                                                                                           ttGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACgccgcc                       >  1:830798/1‑140 (MQ=255)
                                                                                                            tGCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCt                      >  1:655938/1‑140 (MQ=255)
                                                                                                             gCCGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTg                     >  1:677647/1‑140 (MQ=255)
                                                                                                               cGTCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGc                   <  2:20283/140‑1 (MQ=255)
                                                                                                                 tCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCgg                 <  1:301649/140‑1 (MQ=255)
                                                                                                                 tCTGTCATCGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCgg                 <  2:117371/140‑1 (MQ=255)
                                                                                                                         cGCCGATTGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAAt         <  2:1260280/140‑1 (MQ=255)
                                                                                                                               ttGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATgccagc   <  1:186527/140‑1 (MQ=255)
                                                                                                                               ttGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATgccagc   <  1:722289/140‑1 (MQ=255)
                                                                                                                                tGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATgccagcc  <  1:670955/140‑1 (MQ=255)
                                                                                                                                tGAAGCAGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAAGCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATgcaagcc  <  2:1119563/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                     
AACCTTCCGCAACTGGGCATTGCCAATCTGCGTGTTCGTGATCAACTGCTGGAAATTGGCAGTCAGCAACTGGCATTTACCCATCAGGAAGCGAAGCAGTTTTTTGATTGCCGTCTGTCATCGCCGATTGAAGCCGCAGAAAGCAGTCGGATTTGCGATGACGTTTCCGGTTGGGCGACGGCACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATGCCAGCC  >  NC_000913/3553565‑3553832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A