Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,904,135 C→A intergenic (+761/+612) ygcE → / ← queE putative sugar kinase YgcE/putative 7‑carboxy‑7‑deazaguanine synthase QueE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,904,1350CA100.0% 344.4 / NA 99intergenic (+761/+612)ygcE/queEputative sugar kinase YgcE/putative 7‑carboxy‑7‑deazaguanine synthase QueE
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (44/55);  total (44/55)

TAACGGGTTATATGGTGGTTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATCCCCGCT  >  NC_000913/2903998‑2904271
                                                                                                                                         |                                                                                                                                        
tAACGGGTTATATGGTGGTTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAgg                                                                                                                                        >  2:943355/1‑140 (MQ=255)
 aaCGGGTTATATGGTGGTTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGCTTTCGCAAATCTATGGACTATTGCTATTAGGt                                                                                                                                       <  1:1535059/140‑1 (MQ=255)
       ttATATGGTGGTTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATcc                                                                                                                                 >  2:545669/1‑140 (MQ=255)
       ttATATGGTGGTTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATcc                                                                                                                                 >  1:1354987/1‑140 (MQ=255)
         atatGGTGGTTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAATTCTATGGACTATTGCTATTAGGTTTATcccc                                                                                                                               >  1:787199/1‑140 (MQ=255)
         atatGGTGGTTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATcccc                                                                                                                               >  2:1167190/1‑140 (MQ=255)
              gtggtTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTgg                                                                                                                          >  1:721456/1‑140 (MQ=255)
               tggtTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGgc                                                                                                                         >  1:347393/1‑140 (MQ=255)
                ggtTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGgcg                                                                                                                        >  1:1691943/1‑140 (MQ=255)
                ggtTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGgcg                                                                                                                        >  1:2028804/1‑140 (MQ=255)
                ggtTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGgcg                                                                                                                        >  1:2031362/1‑140 (MQ=255)
                 gtTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGgcgc                                                                                                                       >  2:1032408/1‑140 (MQ=255)
                 gtTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGgcgc                                                                                                                       >  2:125727/1‑140 (MQ=255)
                  tttATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGcgcg                                                                                                                      <  2:1169202/140‑1 (MQ=255)
                  tttATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGcgcg                                                                                                                      >  2:1159668/1‑140 (MQ=255)
                  tttATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGcgcg                                                                                                                      <  2:830055/140‑1 (MQ=255)
                  tttATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGcgcg                                                                                                                      <  1:787503/140‑1 (MQ=255)
                  tttATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGcgcg                                                                                                                      <  1:822198/140‑1 (MQ=255)
                   ttATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCgg                                                                                                                     <  2:1436780/140‑1 (MQ=255)
                    tATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCggg                                                                                                                    >  1:1753492/1‑140 (MQ=255)
                           gCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGcgcg                                                                                                                      >  1:1570804/1‑131 (MQ=255)
                           gCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGcgcg                                                                                                                      <  2:1570804/131‑1 (MQ=255)
                           gCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACg                                                                                                             >  2:1346680/1‑140 (MQ=255)
                            cTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACgg                                                                                                            >  2:138219/1‑140 (MQ=255)
                             tGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACggg                                                                                                           >  2:110648/1‑140 (MQ=255)
                              ggCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGgc                                                                                                          <  2:283134/140‑1 (MQ=255)
                                tgcgGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGgcgc                                                                                                        <  2:1354987/139‑1 (MQ=255)
                                cgcgGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGgcgc                                                                                                        <  1:943355/140‑1 (MQ=255)
                                 gcgGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCa                                                                                                       <  1:138219/140‑1 (MQ=255)
                                 gcgGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCa                                                                                                       <  1:545669/140‑1 (MQ=255)
                                   ggggAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACg                                                                                                     <  1:1513000/140‑1 (MQ=255)
                                   ggggAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACg                                                                                                     <  1:407561/140‑1 (MQ=255)
                                    gggAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAACCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACgg                                                                                                    <  1:1407902/140‑1 (MQ=255)
                                          tCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACa                                                                                              <  2:979146/140‑1 (MQ=255)
                                          tCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACa                                                                                              <  2:721456/140‑1 (MQ=255)
                                          tCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACa                                                                                              <  1:649028/140‑1 (MQ=255)
                                          tCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACa                                                                                              <  2:347393/140‑1 (MQ=255)
                                           tgACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACaa                                                                                             <  1:1735888/139‑1 (MQ=255)
                                           cGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACaa                                                                                             <  2:93848/140‑1 (MQ=255)
                                           cGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACaa                                                                                             <  1:1159668/140‑1 (MQ=255)
                                             aCAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAg                                                                                           >  1:2066407/1‑140 (MQ=255)
                                             aCAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAg                                                                                           >  1:670982/1‑140 (MQ=255)
                                                 aaCGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCgt                                                                                       >  2:2004019/1‑140 (MQ=255)
                                                  aCGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCgtg                                                                                      <  1:856009/140‑1 (MQ=255)
                                                   cGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCgtgt                                                                                     <  2:2028804/140‑1 (MQ=255)
                                                          agtagtCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCt                                                                              <  1:547099/140‑1 (MQ=255)
                                                           gtagtCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTc                                                                             >  1:1519104/1‑140 (MQ=255)
                                                               tctcGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGtt                                                                         >  2:1720784/1‑140 (MQ=255)
                                                               tctcGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGtt                                                                         >  1:1182522/1‑140 (MQ=255)
                                                               tctcGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGtt                                                                         >  1:1216092/1‑140 (MQ=255)
                                                                  cGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTAt                                                                      <  1:1051780/140‑1 (MQ=255)
                                                                   gTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATc                                                                     >  2:1636021/1‑140 (MQ=255)
                                                                    tCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATcc                                                                    >  2:1263839/1‑140 (MQ=255)
                                                                      aGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATcccc                                                                  >  1:1677645/1‑140 (MQ=255)
                                                                      aGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATcccc                                                                  >  1:779416/1‑140 (MQ=255)
                                                                      aGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATcccc                                                                  >  1:1242790/1‑140 (MQ=255)
                                                                          tCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTACCTGCTCGGTTTATCCCCGCTg                                                              <  1:1014374/140‑1 (MQ=255)
                                                                                ttATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCACGCTGGCGCgg                                                        <  2:1691943/140‑1 (MQ=255)
                                                                                  aTCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTTTTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCgggg                                                      <  1:451932/140‑1 (MQ=255)
                                                                                  aTCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCgggg                                                      <  1:1263839/140‑1 (MQ=255)
                                                                                        gCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACt                                                >  2:1847052/1‑140 (MQ=255)
                                                                                        gCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACt                                                <  2:2081650/140‑1 (MQ=255)
                                                                                        gCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACt                                                <  2:1519104/140‑1 (MQ=255)
                                                                                        gCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACt                                                >  1:533662/1‑140 (MQ=255)
                                                                                          tGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTgg                                              <  1:2004019/140‑1 (MQ=255)
                                                                                           ggCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGc                                             <  1:110648/140‑1 (MQ=255)
                                                                                                ggggAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGc                                        <  2:1011233/140‑1 (MQ=255)
                                                                                                 gggAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAATCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCa                                       >  2:1454904/1‑140 (MQ=255)
                                                                                                  ggAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCaa                                      <  2:2062643/140‑1 (MQ=255)
                                                                                                   gAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAAc                                     <  2:2127261/140‑1 (MQ=255)
                                                                                                     acacCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAAcag                                   <  2:1753492/140‑1 (MQ=255)
                                                                                                      cacCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAAcagc                                  >  2:377941/1‑140 (MQ=255)
                                                                                                       acCTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAAcagca                                 <  1:1636021/140‑1 (MQ=255)
                                                                                                        ccTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAAcagcag                                <  2:1432576/140‑1 (MQ=255)
                                                                                                        ccTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAAcagcag                                <  1:1502441/140‑1 (MQ=255)
                                                                                                        ccTGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAAcagcag                                <  2:1097921/140‑1 (MQ=255)
                                                                                                          tGTTTTCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAgcagca                              <  1:573931/140‑1 (MQ=255)
                                                                                                            ttttCGCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCAcc                            >  2:782411/1‑140 (MQ=255)
                                                                                                                 gCAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGa                       >  2:1201771/1‑140 (MQ=255)
                                                                                                                  cAAATCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGAc                      <  2:45469/140‑1 (MQ=255)
                                                                                                                     aTCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCAc                   <  1:1621367/140‑1 (MQ=255)
                                                                                                                      tCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACg                  <  2:1148265/140‑1 (MQ=255)
                                                                                                                      tCTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACAGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACg                  <  1:829488/140‑1 (MQ=255)
                                                                                                                       cTATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGt                 <  2:779416/140‑1 (MQ=255)
                                                                                                                       atATGGACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGt                 <  2:788006/139‑1 (MQ=255)
                                                                                                                           ggACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGt             <  1:125727/140‑1 (MQ=255)
                                                                                                                           ggACTATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGt             <  1:1908007/140‑1 (MQ=255)
                                                                                                                               tATTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTAt         <  1:1941581/140‑1 (MQ=255)
                                                                                                                                aTTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATc        >  2:988832/1‑140 (MQ=255)
                                                                                                                                aTTGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATc        >  1:2014785/1‑140 (MQ=255)
                                                                                                                                 ttGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATcc       >  2:2042475/1‑140 (MQ=255)
                                                                                                                                 ttGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATcc       >  2:1845759/1‑140 (MQ=255)
                                                                                                                                 ttGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATcc       >  1:1705057/1‑140 (MQ=255)
                                                                                                                                 ttGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATcc       >  2:1503975/1‑140 (MQ=255)
                                                                                                                                 ttGCTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATcc       >  1:189501/1‑140 (MQ=255)
                                                                                                                                    cTATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATCCCCg    >  1:169498/1‑140 (MQ=255)
                                                                                                                                     tATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATCCCCGc   <  2:670982/140‑1 (MQ=255)
                                                                                                                                     tATTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATCCCCGc   <  2:2066407/140‑1 (MQ=255)
                                                                                                                                      aTTAGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATCCCCGCt  <  1:1201771/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
TAACGGGTTATATGGTGGTTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATCCCCGCT  >  NC_000913/2903998‑2904271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A