Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,949,209 C→A intergenic (‑199/‑33) amiC ← / → argA N‑acetylmuramoyl‑L‑alanine amidase C/N‑acetylglutamate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,949,2090CA100.0% 475.0 / NA 136intergenic (‑199/‑33)amiC/argAN‑acetylmuramoyl‑L‑alanine amidase C/N‑acetylglutamate synthase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (65/71);  total (65/71)

Only 100 of 139 total aligned reads displayed.

TTAGCGAAAGACGCATAATCTGTCATCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCATGCTCGGCGGTGA  >  NC_000913/2949075‑2949345
                                                                                                                                      |                                                                                                                                         
ttAGCGAAAGACGCATAATCTGTCATCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAAtt                                                                                                                                      <  1:72235/140‑1 (MQ=255)
 tAGCGAAAGACGCATAATCTGTCATCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAAttt                                                                                                                                     >  1:1303915/1‑140 (MQ=255)
     gAAAGACGCATAATCTGTCATCTAATAAACTGTTATCATTCTTTTTATATTCACGGCTTTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGaa                                                                                                                                 >  1:1672130/1‑140 (MQ=255)
     gAAAGACGCATAATCTGTCATCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGaa                                                                                                                                 <  1:1790108/140‑1 (MQ=255)
     gAAAGACGCATAATCTGTCATCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCACTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGaa                                                                                                                                 <  2:494628/140‑1 (MQ=255)
        aGACGCATAATCTGTCATCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGaataa                                                                                                                              <  2:1188307/140‑1 (MQ=255)
        aGACGCATAATCTGTCATCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGaataa                                                                                                                              <  2:1821939/140‑1 (MQ=255)
         gACGCATAATCTGTCATCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGaataat                                                                                                                             >  1:249549/1‑140 (MQ=255)
         gACGCATAATCTGTCATCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGaataat                                                                                                                             >  1:271496/1‑140 (MQ=255)
          aCGCATAATCTGTCATCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATc                                                                                                                            <  1:1481621/140‑1 (MQ=255)
          aCGCATAATCTGTCATCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATc                                                                                                                            <  2:1960818/140‑1 (MQ=255)
                      tCATCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGgt                                                                                                                >  2:335053/1‑140 (MQ=255)
                        aTCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGgtgt                                                                                                              <  2:538648/140‑1 (MQ=255)
                        aTCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGgtgt                                                                                                              >  2:237758/1‑140 (MQ=255)
                          cTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGc                                                                                                            <  2:2083524/140‑1 (MQ=255)
                          cTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGc                                                                                                            <  2:2039529/140‑1 (MQ=255)
                          cTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGc                                                                                                            <  1:1352279/140‑1 (MQ=255)
                          cTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGc                                                                                                            <  1:237758/140‑1 (MQ=255)
                          cTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTAGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGc                                                                                                            <  2:1672130/140‑1 (MQ=255)
                           taataaACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGcc                                                                                                           >  2:324070/1‑140 (MQ=255)
                            aataaACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCg                                                                                                          >  2:2058728/1‑140 (MQ=255)
                              taaACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑g                                                                                                       >  1:2070236/1‑140 (MQ=255)
                                aaCGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGt                                                                                                     >  1:2100037/1‑140 (MQ=255)
                                   ggTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTaaa                                                                                                  >  1:1837476/1‑140 (MQ=255)
                                     tAAGCATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTATGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGA‑GGTAAAga                                                                                                >  2:834601/1‑139 (MQ=255)
                                     tAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAgg                                                                                                                 <  2:744592/124‑1 (MQ=255)
                                     tAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAgg                                                                                                >  2:1331196/1‑140 (MQ=255)
                                     tAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAgg                                                                                                >  2:1782570/1‑140 (MQ=255)
                                     tAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAgg                                                                                                >  1:1216335/1‑140 (MQ=255)
                                            tCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTaa                                                                                         >  1:1859804/1‑140 (MQ=255)
                                            tCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTaa                                                                                         >  2:176/1‑140 (MQ=255)
                                             cTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTaaa                                                                                        >  1:2124892/1‑140 (MQ=255)
                                                   atatTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAg                                                                                  <  2:1837476/140‑1 (MQ=255)
                                                   atatTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAg                                                                                  >  1:195069/1‑140 (MQ=255)
                                                   atatTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAg                                                                                  >  1:1892442/1‑140 (MQ=255)
                                                    tatTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGt                                                                                 >  2:2029807/1‑140 (MQ=255)
                                                        cACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGt                                                                             >  2:1605949/1‑140 (MQ=255)
                                                        cACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGt                                                                             >  1:283922/1‑140 (MQ=255)
                                                         aCGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTc                                                                            >  1:402872/1‑140 (MQ=255)
                                                           ggCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGa                                                                          >  1:1830266/1‑140 (MQ=255)
                                                              aTTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAggg                                                                       >  1:145499/1‑140 (MQ=255)
                                                               ttACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGa                                                                      >  2:858150/1‑140 (MQ=255)
                                                               ttACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGa                                                                      <  2:1216335/140‑1 (MQ=255)
                                                                 aCTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGAtt                                                                    <  2:2111065/140‑1 (MQ=255)
                                                                   tGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTcc                                                                  >  2:417374/1‑140 (MQ=255)
                                                                     aTAAAAAAGTCGCTCTCGCATAAACTTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGc                                                                >  2:1884606/1‑140 (MQ=255)
                                                                     aTAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGc                                                                >  2:822742/1‑140 (MQ=255)
                                                                     aTAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGc                                                                >  2:1273805/1‑140 (MQ=255)
                                                                     aTAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGc                                                                >  1:88760/1‑140 (MQ=255)
                                                                       aaaaaaGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCa                                                              <  2:249549/140‑1 (MQ=255)
                                                                       aaaaaaGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCa                                                              >  2:2095274/1‑140 (MQ=255)
                                                                       aaaaaaGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCa                                                              <  1:462618/140‑1 (MQ=255)
                                                                         aaaaGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCAtt                                                            <  2:283922/140‑1 (MQ=255)
                                                                         aaaaGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCAtt                                                            <  1:1782570/140‑1 (MQ=255)
                                                                          aaaGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTc                                                           <  2:2048061/140‑1 (MQ=255)
                                                                            aGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCg                                                          <  1:83006/140‑1 (MQ=255)
                                                                            aGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCgt                                                         >  2:62005/1‑139 (MQ=255)
                                                                            aGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCgg                                                         <  2:2141455/140‑1 (MQ=255)
                                                                            aGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCgg                                                         <  2:2076891/140‑1 (MQ=255)
                                                                            aGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCgg                                                         <  2:908012/140‑1 (MQ=255)
                                                                            aGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCgg                                                         <  2:259990/140‑1 (MQ=255)
                                                                            aGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCgg                                                         <  2:898590/140‑1 (MQ=255)
                                                                            aGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCgg                                                         >  1:702465/1‑140 (MQ=255)
                                                                            aGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCgg                                                         <  1:493141/140‑1 (MQ=255)
                                                                            aGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCgg                                                         <  1:1852331/140‑1 (MQ=255)
                                                                             gTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGt                                                        <  1:176/140‑1 (MQ=255)
                                                                              tCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGtt                                                       <  1:2037788/140‑1 (MQ=255)
                                                                              tCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGtt                                                       <  1:152518/140‑1 (MQ=255)
                                                                                gCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTcc                                                     <  2:1311370/140‑1 (MQ=255)
                                                                                gCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTcc                                                     <  1:335053/140‑1 (MQ=255)
                                                                                 ctctCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTccc                                                    <  2:326414/140‑1 (MQ=255)
                                                                                 ctctCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTccc                                                    <  1:1605949/140‑1 (MQ=255)
                                                                                 ctctCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTccc                                                    <  2:1303915/140‑1 (MQ=255)
                                                                                 ctctCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTccc                                                    <  1:1454125/140‑1 (MQ=255)
                                                                                 ctctCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTccc                                                    <  2:1892442/140‑1 (MQ=255)
                                                                                   ctcGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCta                                                  <  2:1925495/140‑1 (MQ=255)
                                                                                   ctcGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCta                                                  <  1:1224127/140‑1 (MQ=255)
                                                                                   atcGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCta                                                  <  2:271496/139‑1 (MQ=255)
                                                                                                tACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCAc                                     >  2:556229/1‑140 (MQ=255)
                                                                                                tACACTTGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCAc                                     >  1:1821082/1‑140 (MQ=255)
                                                                                                      tGCACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGATGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGa                               >  1:1064666/1‑140 (MQ=255)
                                                                                                        cACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGaaa                             <  1:376978/140‑1 (MQ=255)
                                                                                                        cACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGaaa                             <  1:2043510/140‑1 (MQ=255)
                                                                                                        cACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGaaa                             >  1:1844779/1‑140 (MQ=255)
                                                                                                        cACCCTGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGaaa                             >  1:1899927/1‑140 (MQ=255)
                                                                                                             tGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGt                        >  2:1978545/1‑140 (MQ=255)
                                                                                                             tGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGt                        <  1:1331196/140‑1 (MQ=255)
                                                                                                             tGCGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGt                        >  2:839500/1‑140 (MQ=255)
                                                                                                               cGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGttt                      >  2:1252365/1‑140 (MQ=255)
                                                                                                               cGAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGttt                      <  1:1292324/140‑1 (MQ=255)
                                                                                                                gAAAAAACAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTg                     <  2:2124892/140‑1 (MQ=255)
                                                                                                                     aaCAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGtcatc                <  2:1080014/140‑1 (MQ=255)
                                                                                                                       cAGAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTAGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTcatcat              >  2:1767041/1‑140 (MQ=255)
                                                                                                                         gAATAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGtt                       <  1:268319/129‑1 (MQ=255)
                                                                                                                          aaTAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCATGCt           <  1:1559342/140‑1 (MQ=255)
                                                                                                                            tAAAAATACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCATGCTcg         <  1:1273805/140‑1 (MQ=255)
                                                                                                                                 aTACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCATGCTCGGCGGt    <  1:2058728/140‑1 (MQ=255)
                                                                                                                                  tACAATAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCATGCTCGGCGGTg   <  1:2095274/140‑1 (MQ=255)
                                                                                                                                   acaaTAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCATGCTCGGCGGTGa  <  2:1821082/140‑1 (MQ=255)
                                                                                                                                   acaaTAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCATGCTCGGCGGTGa  <  1:659232/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                         
TTAGCGAAAGACGCATAATCTGTCATCTAATAAACGGTAAACATTCTTTTTATATTCACGGCATTACTGATAAAAAAGTCGCTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGT‑GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCATGCTCGGCGGTGA  >  NC_000913/2949075‑2949345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A