Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,968,839	C→A	E47* (GAG→TAG)	rppH ←	RNA pyrophosphohydrolase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,968,839	0	C	A	100.0%	500.0 / NA	143	E47* (GAG→TAG)	rppH	RNA pyrophosphohydrolase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (79/64); total (79/64)

Only 100 of 145 total aligned reads displayed.

AAACCGGCTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTCTGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAGCCATCGTCATCAATC  >  NC_000913/2968704‑2968975

aaaCCGGCTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAGCGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCg                                                                                                                                      <  1:1560184/140‑1 (MQ=255)

  aCCGGCTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGa                                                                                                                                    <  1:1998599/140‑1 (MQ=255)

  aCCGGCTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGa                                                                                                                                    >  1:1130607/1‑140 (MQ=255)

  aCCGGCTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGa                                                                                                                                    <  1:1233412/140‑1 (MQ=255)

      gCTTCGTGTCCCAACGCACCAAACGTTTCGGTAGTTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATtct                                                                                                                                <  2:1527665/140‑1 (MQ=255)

      gCTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATtct                                                                                                                                >  1:1070048/1‑140 (MQ=255)

       cTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGTATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATtctc                                                                                                                               >  2:2018159/1‑140 (MQ=255)

       cTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATtctc                                                                                                                               >  1:2042701/1‑140 (MQ=255)

       cTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATtctc                                                                                                                               >  2:8595/1‑140 (MQ=255)

       cTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATtctc                                                                                                                               >  1:1281677/1‑140 (MQ=255)

       cTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATtctc                                                                                                                               >  1:1225685/1‑140 (MQ=255)

       cTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATtctc                                                                                                                               >  1:1222687/1‑140 (MQ=255)

       cTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATtctc                                                                                                                               >  1:1655466/1‑140 (MQ=255)

       cTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATtctc                                                                                                                               >  2:1897274/1‑140 (MQ=255)

        ttCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTcc                                                                                                                              <  1:875453/140‑1 (MQ=255)

         tCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCg                                                                                                                             <  2:2042701/140‑1 (MQ=255)

          cGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCgg                                                                                                                            >  2:1969854/1‑140 (MQ=255)

                      cACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGc                                                                                                                <  1:366930/140‑1 (MQ=255)

                        ccAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCt                                                                                                              >  1:1000400/1‑140 (MQ=255)

                        ccAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCt                                                                                                              >  2:724398/1‑140 (MQ=255)

                        ccAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCt                                                                                                              <  2:324190/140‑1 (MQ=255)

                        ccAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCt                                                                                                              >  1:313778/1‑140 (MQ=255)

                        ccAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCt                                                                                                              >  1:972590/1‑140 (MQ=255)

                            aCGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCg                                                                                                          >  1:1704182/1‑140 (MQ=255)

                               tttCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGaa                                                                                                       >  2:2005788/1‑140 (MQ=255)

                               tttCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGaa                                                                                                       <  2:674744/140‑1 (MQ=255)

                               tttCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGaa                                                                                                       <  1:1156283/140‑1 (MQ=255)

                               tttCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGaa                                                                                                       <  1:2050743/140‑1 (MQ=255)

                                  cGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAAtt                                                                                                    <  1:2057383/140‑1 (MQ=255)

                                       aTTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAg                                                                                               <  2:1655466/140‑1 (MQ=255)

                                       aTTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAg                                                                                               <  1:1166215/140‑1 (MQ=255)

                                       aTTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAg                                                                                               <  2:1411721/140‑1 (MQ=255)

                                          tGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAg                                                                                            >  1:1012544/1‑140 (MQ=255)

                                            tAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTg                                                                                          <  1:724398/140‑1 (MQ=255)

                                             aGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGc                                                                                         <  2:1222687/140‑1 (MQ=255)

                                               cgcAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTg                                                                                       >  2:576326/1‑140 (MQ=255)

                                                    ccAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCaa                                                                                  >  1:1903024/1‑140 (MQ=255)

                                                     cAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCaaa                                                                                 <  1:576326/140‑1 (MQ=255)

                                                     cAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCaaa                                                                                 <  2:554497/140‑1 (MQ=255)

                                                         tACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGc                                                                             >  1:1481764/1‑140 (MQ=255)

                                                          aCGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGcc                                                                            >  2:58377/1‑140 (MQ=255)

                                                          aCGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGACTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGcc                                                                            >  2:1100080/1‑140 (MQ=255)

                                                             cgTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCggg                                                                         <  2:1343173/140‑1 (MQ=255)

                                                             cgTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCggg                                                                         <  1:8595/140‑1 (MQ=255)

                                                             agTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGCTGATTCCGCCTTGCGTAAATTGCCAGGAGTGCTGACCAAATCGCCggg                                                                         <  2:485098/139‑1 (MQ=255)

                                                                 gAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCca                                                                     >  1:768656/1‑140 (MQ=255)

                                                                  aaGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCcac                                                                    >  1:1797872/1‑140 (MQ=255)

                                                                  aaGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCcac                                                                    >  2:1215726/1‑140 (MQ=255)

                                                                  aaGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCcac                                                                    <  1:127513/140‑1 (MQ=255)

                                                                   aGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCcaca                                                                   <  2:1132340/140‑1 (MQ=255)

                                                                   aGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCcaca                                                                   <  2:1823451/140‑1 (MQ=255)

                                                                        ggATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTGTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTAcc                                                              >  1:1942946/1‑140 (MQ=255)

                                                                        ggATACGAAGGTCTTCGCGGCTTAATCCTACTCCTTCAAACAATTCACGGTACATGGCCTGCTATGCGGATTCTCCGGGGTTGATACCGCCTTGAGGAAAATGCCAGGAGTGCTGACCAAATCGCCGGGCCCAAATTGcc                                                              <  2:1038370/140‑1 (MQ=255)

                                                                        agATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTAcc                                                              <  1:816821/139‑1 (MQ=255)

                                                                             cGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGccc                                                         >  2:168308/1‑140 (MQ=255)

                                                                             cGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGccc                                                         <  2:207374/140‑1 (MQ=255)

                                                                               aaCGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCt                                                       >  1:1196482/1‑140 (MQ=255)

                                                                                   tCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCg                                                   >  1:1831285/1‑140 (MQ=255)

                                                                                     tttGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGAt                                                 >  2:1694127/1‑140 (MQ=255)

                                                                                       tGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTa                                               >  1:1931331/1‑140 (MQ=255)

                                                                                              tAATCCTACTTCTTCAAACAATTCACGGTACGTCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCa                                        >  1:995455/1‑140 (MQ=255)

                                                                                              tAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCa                                        <  2:1012544/140‑1 (MQ=255)

                                                                                              tAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCa                                        >  1:22444/1‑140 (MQ=255)

                                                                                              tAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCa                                        <  1:134424/140‑1 (MQ=255)

                                                                                               aaTCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCAc                                       <  1:168308/140‑1 (MQ=255)

                                                                                               aaTCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCAc                                       <  1:1384226/140‑1 (MQ=255)

                                                                                                aTCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACg                                      <  1:1909625/140‑1 (MQ=255)

                                                                                                aTCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACg                                      <  2:797040/140‑1 (MQ=255)

                                                                                                   cTACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATa                                   >  1:1042936/1‑140 (MQ=255)

                                                                                                    tACTTCTTCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATAc                                  <  2:1873660/140‑1 (MQ=255)

                                                                                                      cttcttCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCt                                >  2:62285/1‑140 (MQ=255)

                                                                                                      cttcttCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCt                                >  2:950471/1‑140 (MQ=255)

                                                                                                      cttcttCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCt                                >  1:500990/1‑140 (MQ=255)

                                                                                                      cttcttCAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCt                                >  1:149293/1‑140 (MQ=255)

                                                                                                         cttcAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACg                             >  1:671772/1‑140 (MQ=255)

                                                                                                          ttcAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGt                            >  1:445131/1‑140 (MQ=255)

                                                                                                          ttcAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGt                            <  2:302448/140‑1 (MQ=255)

                                                                                                           tcAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGtt                           >  2:118911/1‑140 (MQ=255)

                                                                                                           tcAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGtt                           >  2:613184/1‑140 (MQ=255)

                                                                                                           tcAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGtt                           >  1:286706/1‑140 (MQ=255)

                                                                                                            cAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGttt                          <  2:1931331/140‑1 (MQ=255)

                                                                                                            cAAACAATTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGttt                          >  2:1778376/1‑140 (MQ=255)

                                                                                                                 aaTTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCg                     <  1:1215726/140‑1 (MQ=255)

                                                                                                                  aTTCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTgggtgg                    <  2:294206/140‑4 (MQ=255)

                                                                                                                   ttCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGt                   >  1:926043/1‑140 (MQ=255)

                                                                                                                    tCACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTa                  >  2:1445278/1‑140 (MQ=255)

                                                                                                                     cACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAg                 >  1:821463/1‑140 (MQ=255)

                                                                                                                     cACGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAg                 <  1:2026631/140‑1 (MQ=255)

                                                                                                                       cGGTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAGcc               <  2:1281677/140‑1 (MQ=255)

                                                                                                                       aggTACATCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAGcc               <  2:1685796/139‑1 (MQ=255)

                                                                                                                             aTCGCCTGCTATGCGGATTCTCCTGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAGCCATCGtc         >  2:349058/1‑140 (MQ=255)

                                                                                                                             aTCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGTCGGTAGCCATCGtc         >  2:383767/1‑140 (MQ=255)

                                                                                                                             aTCGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAGCCATCGtc         >  2:678223/1‑140 (MQ=255)

                                                                                                                               cGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCTAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAGCCATCGtcat       >  1:1308385/1‑140 (MQ=255)

                                                                                                                               cGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAGCCATCGtcat       >  1:1374232/1‑140 (MQ=255)

                                                                                                                               cGCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAGCCATCGtcat       >  1:693440/1‑140 (MQ=255)

                                                                                                                                gCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAGCCATCGtcatc      <  1:496059/140‑1 (MQ=255)

                                                                                                                                gCCTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAGCCATCGtcatc      <  1:62285/140‑1 (MQ=255)

                                                                                                                                 ccTGCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAGCCATCGtcatca     <  1:1694127/140‑1 (MQ=255)

                                                                                                                                    gCTATGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAGCCATCGTCatcaatc  >  2:2102652/1‑140 (MQ=255)

AAACCGGCTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTCTGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACGATACCTACGTTTGGGCGGTAGCCATCGTCATCAATC  >  NC_000913/2968704‑2968975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A