Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,352,163	G→T	S288Y (TCC→TAC)	arcB ←	sensory histidine kinase ArcB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,352,163	0	G	T	100.0%	417.0 / NA	121	S288Y (TCC→TAC)	arcB	sensory histidine kinase ArcB
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (63/58); total (63/58)

Only 100 of 125 total aligned reads displayed.

ATTCCCCAGCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGGAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACGGATTT  >  NC_000913/3352027‑3352298

atTCCCCAGCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGtaga                                                                                                                                      >  1:518962/1‑140 (MQ=255)

atTCCCCAGCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGtaga                                                                                                                                      <  2:1946037/140‑1 (MQ=255)

 ttCCCCAGCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGAt                                                                                                                                     <  1:2129401/140‑1 (MQ=255)

  tCCCCAGCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGTGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATa                                                                                                                                    >  2:165374/1‑140 (MQ=255)

  tCCCCAGCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATa                                                                                                                                    >  2:2149238/1‑140 (MQ=255)

        gCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAAcgtc                                                                                                                              >  1:796588/1‑140 (MQ=255)

        gCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAAcgtc                                                                                                                              >  1:1552051/1‑140 (MQ=255)

        gCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAAcg                                                                                                                                <  2:1399791/138‑1 (MQ=255)

        gCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAAcg                                                                                                                                >  1:1399791/1‑138 (MQ=255)

         cGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAAcgtct                                                                                                                             >  2:273871/1‑139 (MQ=255)

         cGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAAcgtcg                                                                                                                             >  1:501636/1‑140 (MQ=255)

         cGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAAcgtcg                                                                                                                             >  1:1357839/1‑140 (MQ=255)

         cGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAAcgtcg                                                                                                                             >  1:1126399/1‑140 (MQ=255)

           tGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGtt                                                                                                                           >  1:59788/1‑140 (MQ=255)

             aCGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGtttt                                                                                                                         >  1:66311/1‑140 (MQ=255)

               ggCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGt                                                                                                                       <  2:949808/140‑1 (MQ=255)

               ggCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGt                                                                                                                       <  2:70656/140‑1 (MQ=255)

               ggCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGt                                                                                                                       <  2:1357839/140‑1 (MQ=255)

                 ccGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTcg                                                                                                                     >  2:1474745/1‑140 (MQ=255)

                               gTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTc                                                                                                       >  2:1175805/1‑140 (MQ=255)

                               gTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTc                                                                                                       >  1:1070597/1‑140 (MQ=255)

                               gTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTc                                                                                                       >  1:1908749/1‑140 (MQ=255)

                               gTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTc                                                                                                       >  1:118146/1‑140 (MQ=255)

                                  ttGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAg                                                                                                    >  1:1736481/1‑140 (MQ=255)

                                  ttGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAg                                                                                                    <  2:66311/140‑1 (MQ=255)

                                   tGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATAACGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTATCGGCTGGACCGttacaca                                                                                                   >  2:1824688/1‑135 (MQ=255)

                                    gagaTATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAgcg                                                                                                  <  2:59788/140‑1 (MQ=255)

                                    gagaTATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAgcg                                                                                                  <  2:1126399/140‑1 (MQ=255)

                                    gagaTATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAgcg                                                                                                  <  1:985987/140‑1 (MQ=255)

                                    gagaTATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAgcg                                                                                                  <  1:742395/140‑1 (MQ=255)

                                    gagaTATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAgcg                                                                                                  <  2:1486793/140‑1 (MQ=255)

                                    gagaTATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAgcg                                                                                                  <  2:1887547/140‑1 (MQ=255)

                                    gagaTATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAgcg                                                                                                  <  1:1103217/140‑1 (MQ=255)

                                      gaTATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCa                                                                                                <  1:242712/140‑1 (MQ=255)

                                      gaTATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTAACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCa                                                                                                <  2:1940866/140‑1 (MQ=255)

                                        tatTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATc                                                                                              <  1:2005781/140‑1 (MQ=255)

                                               ccTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATAc                                                                                       >  1:1409600/1‑140 (MQ=255)

                                                 tGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCg                                                                                     >  1:1422996/1‑140 (MQ=255)

                                                  gCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGc                                                                                    <  2:333390/140‑1 (MQ=255)

                                                  gCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGc                                                                                    >  2:1656528/1‑140 (MQ=255)

                                                   cTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCt                                                                                   >  2:81835/1‑140 (MQ=255)

                                                   cTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCt                                                                                   >  1:1696145/1‑140 (MQ=255)

                                                    tCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCtt                                                                                  >  2:128612/1‑140 (MQ=255)

                                                    tCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCtt                                                                                  <  2:1422996/140‑1 (MQ=255)

                                                    tCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCtt                                                                                  >  2:585741/1‑140 (MQ=255)

                                                    tCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCtt                                                                                  >  1:778238/1‑140 (MQ=255)

                                                        cggTGAGTTCGTTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGc                                                                              >  1:1808783/1‑140 (MQ=255)

                                                         ggTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCt                                                                             <  1:585741/140‑1 (MQ=255)

                                                           tGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCg                                                                           >  2:1840650/1‑140 (MQ=255)

                                                             aGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGt                                                                         >  2:1923018/1‑140 (MQ=255)

                                                             aGTTCGGGATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGt                                                                         >  2:1117171/1‑140 (MQ=255)

                                                                tCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAAt                                                                      >  1:180042/1‑140 (MQ=255)

                                                                    tATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTcg                                                                  <  2:118146/140‑1 (MQ=255)

                                                                    tATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTcg                                                                  <  2:1992168/140‑1 (MQ=255)

                                                                    tATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTcg                                                                  <  1:1540771/140‑1 (MQ=255)

                                                                         agcagAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGAcc                                                             >  2:508062/1‑140 (MQ=255)

                                                                         agcagAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGAcc                                                             >  2:674728/1‑140 (MQ=255)

                                                                          gcagAATGTGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCa                                                            <  1:165374/140‑1 (MQ=255)

                                                                          gcagAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCa                                                            <  1:128612/140‑1 (MQ=255)

                                                                          gcagAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCa                                                            <  2:893355/140‑1 (MQ=255)

                                                                            agAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCaaa                                                          <  1:1863210/140‑1 (MQ=255)

                                                                            agAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCaaa                                                          <  1:865730/140‑1 (MQ=255)

                                                                                tGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGccc                                                      >  1:1675872/1‑140 (MQ=255)

                                                                                tGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGccc                                                      >  2:477855/1‑140 (MQ=255)

                                                                                tGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGccc                                                      >  2:277908/1‑140 (MQ=255)

                                                                                   ggCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATc                                                   >  2:1345650/1‑140 (MQ=255)

                                                                                     cTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCaa                                                 >  1:1372820/1‑140 (MQ=255)

                                                                                     cTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCaa                                                 >  2:1305444/1‑140 (MQ=255)

                                                                                               cgaTACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGt                                       <  1:81835/140‑1 (MQ=255)

                                                                                                   aCCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTAc                                   <  2:1552051/140‑1 (MQ=255)

                                                                                                    ccGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTAcc                                  >  2:1652148/1‑140 (MQ=255)

                                                                                                      gTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCTGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCa                                <  2:720407/140‑1 (MQ=255)

                                                                                                      gTTCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCa                                <  1:1492479/140‑1 (MQ=255)

                                                                                                       ttCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCAc                               <  1:1474745/140‑1 (MQ=255)

                                                                                                       ttCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCAc                               <  2:759959/140‑1 (MQ=255)

                                                                                                        tCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCAcg                              <  2:636943/140‑1 (MQ=255)

                                                                                                        tCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCAcg                              <  1:1345650/140‑1 (MQ=255)

                                                                                                        tCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCAcg                              <  1:1117171/140‑1 (MQ=255)

                                                                                                        tCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCAcg                              <  2:967433/140‑1 (MQ=255)

                                                                                                        tCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCAcg                              <  2:1808783/140‑1 (MQ=255)

                                                                                                        tCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCAcg                              <  1:628112/140‑1 (MQ=255)

                                                                                                        tCAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCAcg                              <  1:1656528/140‑1 (MQ=255)

                                                                                                         cAGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCAcgc                             <  1:477855/140‑1 (MQ=255)

                                                                                                          aGCGGTGTACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCAcgcg                            >  1:1800395/1‑140 (MQ=255)

                                                                                                              gtgtACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCg                        <  2:1462822/140‑1 (MQ=255)

                                                                                                              gtgtACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCg                        <  1:1923018/140‑1 (MQ=255)

                                                                                                                 tACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCgtag                     >  1:59174/1‑140 (MQ=255)

                                                                                                                 tACGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCgtag                     >  2:1310247/1‑140 (MQ=255)

                                                                                                                   cGCAATTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCgtagta                   <  2:1800395/140‑1 (MQ=255)

                                                                                                                      aaTTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACgg                >  2:178146/1‑140 (MQ=255)

                                                                                                                      aaTTCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACgg                >  2:499087/1‑140 (MQ=255)

                                                                                                                        ttCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCa              >  2:1396781/1‑140 (MQ=255)

                                                                                                                         tCGTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGTTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCAc             >  2:1907193/1‑140 (MQ=255)

                                                                                                                           gTGACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACtt           >  1:394156/1‑140 (MQ=255)

                                                                                                                             gACTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTa         >  1:700441/1‑140 (MQ=255)

                                                                                                                               cTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACg       >  1:2138713/1‑140 (MQ=255)

                                                                                                                               cTGATGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATAAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACg       <  2:1736481/140‑1 (MQ=255)

                                                                                                                                  aTGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACGGAt    >  2:1279252/1‑140 (MQ=255)

                                                                                                                                  aTGGTGTAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACGGAt    >  2:754693/1‑140 (MQ=255)

                                                                                                                                    ggtgtAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACGGAttt  >  1:1987721/1‑140 (MQ=255)

ATTCCCCAGCGTGACGGCCGAAACATGGATGGTCTTGAGATATTTTTCCTGCTCGGCGGTGAGTTCGGTATCCAGCAGAATGCGGCTCAGACCGACGATACCGTTCAGCGGTGTACGCAATTCGTGACTGATGGTGGAGATAAACGTCGTTTTGTCGCGGCTGGCCCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACGGATTT  >  NC_000913/3352027‑3352298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A