Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F48 I1 R1
|
508 |
125.6 |
4303852 |
99.2% |
4269421 |
139.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,454,763 |
C→A |
E212D (GAG→GAT) |
gspA ← |
Type II secretion system protein GspA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,454,763 | 0 | C | A | 100.0%
| 461.1
/ NA
| 135 | E212D (GAG→GAT) | gspA | Type II secretion system protein GspA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (60/75); total (60/75) |
Only 100 of 138 total aligned reads displayed.
GACAGCAGTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGCTCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGTTGGTCAATATTCTGACCTTCA > NC_000913/3454626‑3454898
|
gACAGCAGTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATc > 1:81262/1‑140 (MQ=255)
gACAGCAGTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATc > 2:586245/1‑140 (MQ=255)
cagcagTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCgg > 2:1383641/1‑140 (MQ=255)
cagcagTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCgg < 1:1446238/140‑1 (MQ=255)
cagcagTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCgc > 1:1641654/1‑139 (MQ=255)
agcagTAGCCAACCACAGGTAAGAGCGATACTGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGc < 1:1237283/140‑1 (MQ=255)
agcagTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGc < 1:1695080/140‑1 (MQ=255)
agcagTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGc < 2:1457666/140‑1 (MQ=255)
agcagTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGc < 1:75438/140‑1 (MQ=255)
agcagTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGc < 1:607977/140‑1 (MQ=255)
agcagTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGc < 1:1984792/140‑1 (MQ=255)
agcagTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCACCATTGTTTTGCTGTGAAAACGCTGGTCTGATCgac < 2:506856/140‑3 (MQ=255)
gcagTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCt > 2:1960059/1‑140 (MQ=255)
cagTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCt < 2:79722/139‑1 (MQ=255)
gCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGt > 1:2103904/1‑140 (MQ=255)
aaCCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGTTTATCACCCAATTTGCGGTACATCATTCGCCATTGTTTTGCTGTTAAAACGCTTGTCTGATCGGCTTTATGtaat > 2:1682198/1‑140 (MQ=255)
aaCCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGtaat > 1:138795/1‑140 (MQ=255)
ccACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGtaataa > 1:378568/1‑140 (MQ=255)
ccACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGtaataa > 1:1566714/1‑140 (MQ=255)
ccACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGtaataa > 2:134575/1‑140 (MQ=255)
caGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGc < 1:145289/125‑1 (MQ=255)
ggTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGaa < 1:1403231/140‑1 (MQ=255)
ggTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGaa > 2:1867275/1‑140 (MQ=255)
gagCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGtt > 1:1034579/1‑140 (MQ=255)
gagCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGtt > 2:1578659/1‑140 (MQ=255)
agCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGttt > 1:1084254/1‑140 (MQ=255)
agCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGttt > 2:687327/1‑140 (MQ=255)
gATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAATCGAATTGTTTCGc > 2:326616/1‑140 (MQ=255)
aTAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGcc > 1:1286205/1‑140 (MQ=255)
tAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCg > 2:1206014/1‑140 (MQ=255)
tAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCCGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCg > 2:1064268/1‑140 (MQ=255)
tGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCa < 2:154064/140‑1 (MQ=255)
tGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCa < 2:138795/140‑1 (MQ=255)
tCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAgcg > 2:886966/1‑140 (MQ=255)
ccACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAgcgc < 1:915017/140‑1 (MQ=255)
ccACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAgcgc > 2:1427634/1‑140 (MQ=255)
ccACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAgcgc < 1:1682198/140‑1 (MQ=255)
aCTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCa < 2:115067/140‑1 (MQ=255)
atcaCCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCtt > 2:1581728/1‑140 (MQ=255)
caccacGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTc > 2:2031321/1‑140 (MQ=255)
acGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGACGGCAAGCGCAAGCTTTCTGCg < 1:1821932/140‑1 (MQ=255)
cGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGa > 1:817910/1‑140 (MQ=255)
ggCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGAt > 1:1036728/1‑140 (MQ=255)
ggCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGAt < 1:134575/140‑1 (MQ=255)
ggCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGAt > 2:1528513/1‑140 (MQ=255)
agCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGAt < 2:244422/139‑1 (MQ=255)
cAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATcc > 1:1848615/1‑139 (MQ=255)
aGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGcc < 2:1004167/140‑1 (MQ=255)
aGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGcc < 2:1657602/140‑1 (MQ=255)
aGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGGCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGcc < 2:1286205/140‑1 (MQ=255)
gCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGccc < 1:526495/140‑1 (MQ=255)
gCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGccc < 1:1581728/140‑1 (MQ=255)
gCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGccc < 1:227525/140‑1 (MQ=255)
gCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGccc < 2:2082513/140‑1 (MQ=255)
gCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGccc < 1:1740352/140‑1 (MQ=255)
acTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGccc < 2:1963022/139‑1 (MQ=255)
cTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGcccc > 2:1129435/1‑140 (MQ=255)
tGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCg > 2:243608/1‑140 (MQ=255)
gCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGa < 1:61165/140‑1 (MQ=255)
gCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGa < 2:378568/140‑1 (MQ=255)
gCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGa < 2:1893606/140‑1 (MQ=255)
gCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTCGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGa < 1:97073/140‑1 (MQ=255)
gggCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGc > 2:12031/1‑140 (MQ=255)
gggCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGc > 2:159599/1‑140 (MQ=255)
ggCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCt < 1:558950/140‑1 (MQ=255)
ggTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATc < 1:857573/140‑1 (MQ=255)
tCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGttt < 2:2029214/140‑1 (MQ=255)
tCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGttt < 1:62437/140‑1 (MQ=255)
tatGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAActc > 2:444988/1‑140 (MQ=255)
tGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTg > 2:458301/1‑140 (MQ=255)
tGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTg > 1:1025569/1‑140 (MQ=255)
gCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTgg < 1:12031/140‑1 (MQ=255)
gCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTCTCAGAACTCTgg < 2:81262/140‑1 (MQ=255)
gTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCgg > 1:12838/1‑140 (MQ=255)
gTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCgg > 1:3978/1‑140 (MQ=255)
tAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGt < 1:1372301/140‑1 (MQ=255)
aaTCATTCGCCATTGTTTTGCTGTAAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTa > 1:1910867/1‑140 (MQ=255)
aTCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTaa > 2:1257068/1‑140 (MQ=255)
aTCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTaa > 2:417285/1‑140 (MQ=255)
tCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTaaa < 1:1064268/140‑1 (MQ=255)
tCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTaaa < 1:886966/140‑1 (MQ=255)
ttCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAgg > 1:1431917/1‑140 (MQ=255)
gCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGgaga > 1:1104635/1‑140 (MQ=255)
gCCATTGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGgaga < 2:1036728/140‑1 (MQ=255)
gCCATTGTTTTGATGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGgaga < 2:1313647/140‑1 (MQ=255)
tGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCggg < 2:817910/140‑1 (MQ=255)
tGTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCggg < 2:1025569/140‑1 (MQ=255)
gTTTTGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGt < 1:687327/140‑1 (MQ=255)
ttttGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGtt < 2:944401/140‑1 (MQ=255)
tGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGTTGGt < 1:243608/140‑1 (MQ=255)
tGCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGTTGGt > 2:1770091/1‑140 (MQ=255)
gCTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGTTGGTc < 1:1206014/140‑1 (MQ=255)
cTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGTTGGTCa > 1:1616817/1‑140 (MQ=255)
cTGTGAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGTTGGTCa > 1:526817/1‑140 (MQ=255)
gAAAACGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGTTGGTCAatat > 2:1270535/1‑140 (MQ=255)
aaaCGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGTTGGTCAATATTc < 1:1353413/140‑1 (MQ=255)
aaCGCTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGTTGGTCAATATTCt < 2:1063769/140‑1 (MQ=255)
cTGGTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGTTGGTCAATATTCTGAcc < 1:1960059/140‑1 (MQ=255)
ggTCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGTTGGTCAATATTCTGACCtt > 2:127182/1‑140 (MQ=255)
tCTGATCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGTTGGTCAATATTCTGACCTTCa < 1:1600598/140‑1 (MQ=255)
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GACAGCAGTAGCCAACCACAGGTAAGAGCGATAATGGTTCCACTCATCACCACGGCAAGCTGCATTTTCCGGGGGCGGTTATCACCCAATATGCGGTAAATCATTCGCCATTGTTTTGCTGTGAAAACGCTGGTCTGCTCGGCTTGCTGTAATAAGCGAATTGTTTCGCCGGCAAGCGCCAGCTTTCTGCGATCGCCCCGACATAATAAAGCTATCCGTTTCAGAACTCTGGCGGTTAAAAGGAGATCGGGTTGGTCAATATTCTGACCTTCA > NC_000913/3454626‑3454898
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
