Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,580,541 C→A G89W (GGG→TGG)  yhhX ← putative oxidoreductase YhhX

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,580,5410CA100.0% 386.4 / NA 113G89W (GGG→TGG) yhhXputative oxidoreductase YhhX
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (53/60);  total (53/60)

Only 100 of 115 total aligned reads displayed.

GTCAGGAAGCAGGAGTCAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCCGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATGGATATGGGAATAAATGGGAG  >  NC_000913/3580408‑3580672
                                                                                                                                     |                                                                                                                                   
gTCAGGAAGCAGGAGTCAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTc                                                                                                                               >  1:761664/1‑140 (MQ=255)
gTCAGGAAGCAGGAGTCAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTc                                                                                                                               >  1:1447111/1‑140 (MQ=255)
   aGGAAGCAGGAGTCAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAg                                                                                                                            >  1:1872584/1‑140 (MQ=255)
     gAAGCAGGAGTCAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAgcg                                                                                                                          <  2:761664/140‑1 (MQ=255)
       aGCAGGAGTCAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAgcgcg                                                                                                                        <  1:406254/140‑1 (MQ=255)
           ggAGTCAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTTTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGtt                                                                                                                    >  2:862619/1‑140 (MQ=255)
           ggAGTCAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGtt                                                                                                                    >  1:527643/1‑140 (MQ=255)
           ggAGTCAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGtt                                                                                                                    >  2:73279/1‑140 (MQ=255)
           ggAGTCAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGtt                                                                                                                    >  2:589636/1‑140 (MQ=255)
            gAGTCAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGttt                                                                                                                   >  2:1019019/1‑140 (MQ=255)
             aGTCAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTc                                                                                                                  >  1:953809/1‑140 (MQ=255)
               tCAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTcgc                                                                                                                >  2:1151590/1‑140 (MQ=255)
                cAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTcgcg                                                                                                               <  2:1102881/140‑1 (MQ=255)
                         gaTTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGaaa                                                                                                      >  1:1398193/1‑140 (MQ=255)
                                 aaCGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTc                                                                                              <  2:546269/139‑1 (MQ=255)
                                     gCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCcgcg                                                                                          <  2:1194924/140‑1 (MQ=255)
                                     gCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCcgcg                                                                                          <  1:73279/140‑1 (MQ=255)
                                     gCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCcgcg                                                                                          <  1:1151590/140‑1 (MQ=255)
                                     gCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCcgcg                                                                                          <  1:886809/140‑1 (MQ=255)
                                     gCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCcgcg                                                                                          <  1:1949028/140‑1 (MQ=255)
                                     gCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCcgcg                                                                                          >  1:1888354/1‑140 (MQ=255)
                                     gCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCcgcg                                                                                          <  2:2011611/140‑1 (MQ=255)
                                     gCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCcgcg                                                                                          >  1:1611345/1‑140 (MQ=255)
                                     gCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAACACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCcgcg                                                                                          <  1:745005/140‑1 (MQ=255)
                                     gCGTGACGGCCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAAAGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCcgcg                                                                                          >  1:1887659/1‑140 (MQ=255)
                                      cGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTc                                                                                              <  1:88720/135‑1 (MQ=255)
                                      cGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTc                                                                                              >  2:88720/1‑135 (MQ=255)
                                      cGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGt                                                                                         >  1:300927/1‑140 (MQ=255)
                                      cGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGt                                                                                         >  2:569508/1‑140 (MQ=255)
                                      cGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGt                                                                                         >  2:1751142/1‑140 (MQ=255)
                                       gTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTg                                                                                        >  1:1050581/1‑140 (MQ=255)
                                         gACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTggg                                                                                      >  2:752471/1‑140 (MQ=255)
                                          aCGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCcgcg                                                                                          >  1:1080658/1‑135 (MQ=255)
                                          aCGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCcgcg                                                                                          <  2:1080658/135‑1 (MQ=255)
                                           cGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTg                                                                                    <  2:1602200/140‑1 (MQ=255)
                                            ggTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGc                                                                                   <  1:589636/140‑1 (MQ=255)
                                              tCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAg                                                                                 >  1:1790785/1‑140 (MQ=255)
                                              tCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAg                                                                                 >  1:1350879/1‑140 (MQ=255)
                                                    cTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGacaaca                                                                           >  1:355064/1‑140 (MQ=255)
                                                     tttGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGAcaacaa                                                                          >  2:1222667/1‑140 (MQ=255)
                                                      ttGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACaacaac                                                                         <  2:1257018/140‑1 (MQ=255)
                                                      ttGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACaacaac                                                                         <  2:1350879/140‑1 (MQ=255)
                                                       tGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAAcc                                                                        >  2:919188/1‑140 (MQ=255)
                                                       tGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAAcc                                                                        >  1:354721/1‑140 (MQ=255)
                                                          ttttCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGc                                                                     >  2:1172670/1‑140 (MQ=255)
                                                            ttCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCTCATTTTTCCAGGCTTCCAGCGCTCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCtt                                                                   >  2:1461020/1‑140 (MQ=255)
                                                            ttCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCtt                                                                   <  2:544224/140‑1 (MQ=255)
                                                            ttCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGCACTCGAAATGGCTGTCCGCGTGGGTGCAGACCACAACCAGCtt                                                                   <  2:1692701/140‑1 (MQ=255)
                                                              cGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTaa                                                                 >  1:52533/1‑140 (MQ=255)
                                                               gCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAAc                                                                <  1:1019019/140‑1 (MQ=255)
                                                                   aCGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCg                                                            <  2:1447111/140‑1 (MQ=255)
                                                                    cGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCgg                                                           >  2:542193/1‑140 (MQ=255)
                                                                    cGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTGTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCgg                                                           >  2:1431744/1‑140 (MQ=255)
                                                                      cAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGa                                                         <  2:354721/140‑1 (MQ=255)
                                                                      cAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGa                                                         <  1:1431744/140‑1 (MQ=255)
                                                                      cAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGa                                                         <  2:223966/140‑1 (MQ=255)
                                                                      cAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGa                                                         <  1:1516373/140‑1 (MQ=255)
                                                                      cAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGa                                                         <  1:1751142/140‑1 (MQ=255)
                                                                      cAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGa                                                         <  1:1222667/140‑1 (MQ=255)
                                                                      cAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGa                                                         <  1:569508/140‑1 (MQ=255)
                                                                      cAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGa                                                         <  1:752471/140‑1 (MQ=255)
                                                                        aaCAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATc                                                       <  2:326818/140‑1 (MQ=255)
                                                                          cAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGt                                                     >  1:777715/1‑140 (MQ=255)
                                                                           aGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGtt                                                    <  2:1570970/140‑1 (MQ=255)
                                                                           aGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGtt                                                    <  1:919188/140‑1 (MQ=255)
                                                                               ctTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGt                                                >  2:1559637/1‑140 (MQ=255)
                                                                               ctTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGt                                                <  1:1963099/140‑1 (MQ=255)
                                                                                 ttCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTAc                                              <  2:115179/140‑1 (MQ=255)
                                                                                  tCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACt                                             <  2:777715/140‑1 (MQ=255)
                                                                                     ccTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTtct                                          >  2:795773/1‑139 (MQ=255)
                                                                                     ccTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTtcg                                          >  1:1347212/1‑140 (MQ=255)
                                                                                            aaGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGAt                                   <  2:1933959/140‑1 (MQ=255)
                                                                                                 tCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTg                              <  2:1888354/140‑1 (MQ=255)
                                                                                                   ggAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGt                            >  2:389829/1‑140 (MQ=255)
                                                                                                   ggAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGt                            >  1:1232043/1‑140 (MQ=255)
                                                                                                   ggAGTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGt                            >  2:315524/1‑140 (MQ=255)
                                                                                                      gTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGaa                         <  2:527643/140‑1 (MQ=255)
                                                                                                      gTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGaa                         <  2:355064/140‑1 (MQ=255)
                                                                                                      gTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGaa                         <  1:57803/140‑1 (MQ=255)
                                                                                                      gTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGaa                         <  1:709751/140‑1 (MQ=255)
                                                                                                      gTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGaa                         <  1:524920/140‑1 (MQ=255)
                                                                                                      gTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGaa                         <  2:1679545/140‑1 (MQ=255)
                                                                                                      gTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGaa                         <  2:1611345/140‑1 (MQ=255)
                                                                                                      gTGAACGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGaa                         <  2:1347212/140‑1 (MQ=255)
                                                                                                         aaCGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGaa                         <  2:229701/137‑1 (MQ=255)
                                                                                                         aaCGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGaa                         >  1:229701/1‑137 (MQ=255)
                                                                                                         aaCGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATg                      >  1:1423402/1‑140 (MQ=255)
                                                                                                         aaCGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGGGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATg                      >  1:92060/1‑140 (MQ=255)
                                                                                                           cGGTTTTTCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATGGa                    >  1:237002/1‑140 (MQ=255)
                                                                                                              tttttCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATGGatat                 <  2:92060/140‑1 (MQ=255)
                                                                                                              tttttCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATGGatat                 <  2:1887659/140‑1 (MQ=255)
                                                                                                                tttCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATGGATATgg               >  2:1064776/1‑140 (MQ=255)
                                                                                                                tttCGACCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATGGATATgg               <  2:52533/140‑1 (MQ=255)
                                                                                                                     aCCAGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATGGATATGGGAATa          >  1:884397/1‑140 (MQ=255)
                                                                                                                        aGCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATGGATATGGGAATAAAt       >  2:1815868/1‑140 (MQ=255)
                                                                                                                         gCACATTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATGGATATGGGAATAAATg      <  1:1092749/140‑1 (MQ=255)
                                                                                                                          cacaTTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGTGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATGGATATGGGAATAAATgt     >  2:904611/1‑139 (MQ=255)
                                                                                                                          cacaTTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATGGATATGGGAATAAATgg     >  2:1995571/1‑140 (MQ=255)
                                                                                                                            caTTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATGGATATGGGAATAAATGGGa   <  2:884397/140‑1 (MQ=255)
                                                                                                                             aTTTTTCCAGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATGGATATGGGAATAAATGGGAg  <  2:707229/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                   
GTCAGGAAGCAGGAGTCAAAGCGACGATTCTGATACGGCGTGACGGTCAGCCCTTTGCTTTTCGCCAACGCAAACAGCTCTTTCGCCTGCGCAAGTGTCGGAGTGAACGGTTTTTCGACCAGCACATTTTTCCCGGCTTCCAGCGCGCGTTTCGCGTACTCGAAATGGCTGTCCGCGTGGGTGCAGACAACAACCAGCTTAACATCGGGATCGTTTAGTACTTCGTCGAGATCGCTGGTGAAATGGATATGGGAATAAATGGGAG  >  NC_000913/3580408‑3580672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A