Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,324,701	G→T	G155G (GGC→GGA)	phnC ←	phosphonate ABC transporter ATP binding subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,324,701	0	G	T	100.0%	330.8 / NA	96	G155G (GGC→GGA)	phnC	phosphonate ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (53/43); total (53/43)

Only 100 of 101 total aligned reads displayed.

TCTGGTTGATGTCGCGCAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCGCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGTGCTGCCGAGCGCGC  >  NC_000913/4324565‑4324837

tCTGGTTGATGTCGCGCAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGcctccg                                                                                                                                       <  1:1227251/140‑1 (MQ=255)

  tGGTTGATGTCGCGCAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGga                                                                                                                                     <  2:1206336/140‑1 (MQ=255)

  tGGTTGATGTCGCGCAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGga                                                                                                                                     <  1:1874486/140‑1 (MQ=255)

  tGGTTGATAGCGCGCAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGga                                                                                                                                     <  2:1404950/140‑1 (MQ=255)

    gTTGATGTCGCGCAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGgaga                                                                                                                                   >  1:2059148/1‑140 (MQ=255)

    gTTGATGTCGCGCAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGgaga                                                                                                                                   <  2:758776/140‑1 (MQ=255)

       gATGTCGCGCAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAggg                                                                                                                                <  2:1238638/140‑1 (MQ=255)

          gTCGCGCAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTgg                                                                                                                             <  1:1967129/140‑1 (MQ=255)

              cgcAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGga                                                                                                                                     <  1:1631013/128‑1 (MQ=255)

              cgcAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGga                                                                                                                                     >  2:1631013/1‑128 (MQ=255)

              cgcAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAAc                                                                                                                         >  2:96432/1‑140 (MQ=255)

              cgcAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAAc                                                                                                                         >  1:1305334/1‑140 (MQ=255)

              cgcAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAAc                                                                                                                         >  2:799740/1‑140 (MQ=255)

                 aGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAAcgcg                                                                                                                      <  1:157973/140‑1 (MQ=255)

                     tgtCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGa                                                                                                                  >  1:1476898/1‑140 (MQ=255)

                         cATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATggg                                                                                                              <  2:1799755/140‑1 (MQ=255)

                             aCGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCaaa                                                                                                          >  1:974167/1‑140 (MQ=255)

                             aCGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCaaa                                                                                                          >  1:1544739/1‑140 (MQ=255)

                             aCGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCaaa                                                                                                          >  1:843449/1‑140 (MQ=255)

                             aCGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCaaa                                                                                                          >  1:1176539/1‑140 (MQ=255)

                             aCGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCaaa                                                                                                          >  2:978272/1‑140 (MQ=255)

                              cGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCaaaa                                                                                                         <  2:1176539/140‑1 (MQ=255)

                               gATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAAt                                                                                                        >  1:174281/1‑140 (MQ=255)

                                 tGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATgt                                                                                                      >  1:621017/1‑139 (MQ=255)

                                 tGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGc                                                                                                      >  1:857476/1‑140 (MQ=255)

                                 tGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGc                                                                                                      >  1:1014729/1‑140 (MQ=255)

                                 tGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGc                                                                                                      >  1:1115528/1‑140 (MQ=255)

                                 tGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGc                                                                                                      >  2:385390/1‑140 (MQ=255)

                                 tGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGc                                                                                                      >  1:1896254/1‑140 (MQ=255)

                                 tGCGCGCTGATTCTGGCTCCATCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCCGAGAGGGTAGAATAGCGCTGGTGGGCAAACTGc                                                                                                      >  2:572186/1‑140 (MQ=255)

                                  gcgcgcTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCa                                                                                                     <  1:1771796/140‑1 (MQ=255)

                                  gcgcgcTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCa                                                                                                     <  2:1914354/140‑1 (MQ=255)

                                     cgcTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCAcct                                                                                                  >  2:623169/1‑139 (MQ=255)

                                     cgcTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCa                                                                                                  >  1:1195673/1‑140 (MQ=255)

                                        tGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGc                                                                                               <  2:1450939/140‑1 (MQ=255)

                                         gATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGGGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGcc                                                                                              >  2:1603073/1‑140 (MQ=255)

                                                ggTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCgg                                                                                       >  2:573136/1‑140 (MQ=255)

                                                  tCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGt                                                                                     >  2:1166061/1‑140 (MQ=255)

                                                   ccAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTc                                                                                    <  2:1658468/140‑1 (MQ=255)

                                                   ccAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTc                                                                                    <  2:1544739/140‑1 (MQ=255)

                                                   ccAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTc                                                                                    <  1:799740/140‑1 (MQ=255)

                                                   ccAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTc                                                                                    <  1:700541/140‑1 (MQ=255)

                                                   ccAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTc                                                                                    <  1:64142/140‑1 (MQ=255)

                                                   ccAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTc                                                                                    <  2:2059148/140‑1 (MQ=255)

                                                    cAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCa                                                                                   >  2:1991254/1‑140 (MQ=255)

                                                    aaGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCa                                                                                   <  2:843449/139‑1 (MQ=255)

                                                     aGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAg                                                                                  <  1:1534977/140‑1 (MQ=255)

                                                     aGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAg                                                                                  <  2:857476/140‑1 (MQ=255)

                                                     aGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAg                                                                                  >  1:1131134/1‑140 (MQ=255)

                                                      gCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAgc                                                                                 <  1:96432/140‑1 (MQ=255)

                                                            cGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGt                                                                           >  1:1578220/1‑140 (MQ=255)

                                                              aTGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTaa                                                                         <  2:1578220/140‑1 (MQ=255)

                                                                gggTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAAcg                                                                       <  1:1166061/140‑1 (MQ=255)

                                                                  gTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAAcgcg                                                                     <  1:1603073/140‑1 (MQ=255)

                                                                    tCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAAcgcgcg                                                                   <  1:385390/140‑1 (MQ=255)

                                                                      aTCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCt                                                                 >  2:856275/1‑140 (MQ=255)

                                                                         ggCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGtt                                                              >  1:1586039/1‑140 (MQ=255)

                                                                           ccAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTc                                                            >  1:482892/1‑140 (MQ=255)

                                                                             aGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTg                                                          >  2:105051/1‑140 (MQ=255)

                                                                             aGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTg                                                          >  2:594436/1‑140 (MQ=255)

                                                                               aaTCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCt                                                        <  2:2012884/140‑1 (MQ=255)

                                                                                aTCACTTTCGCCTGCTGCATCAGCGCATGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAAAGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGcac                                                       <  2:1476898/140‑3 (MQ=255)

                                                                                    cTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCg                                                   <  1:856275/140‑1 (MQ=255)

                                                                                         gCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAGCGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGaa                                              <  1:978272/140‑1 (MQ=255)

                                                                                         gCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGaa                                              >  2:698664/1‑140 (MQ=255)

                                                                                         gCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGaa                                              >  2:983449/1‑140 (MQ=255)

                                                                                         gCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGaa                                              <  2:1195673/140‑1 (MQ=255)

                                                                                         gCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGaa                                              <  1:760594/140‑1 (MQ=255)

                                                                                         gCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGaa                                              <  1:878349/140‑1 (MQ=255)

                                                                                          ccTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAAc                                             <  1:105051/140‑1 (MQ=255)

                                                                                          ccTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAAc                                             <  1:1144558/140‑1 (MQ=255)

                                                                                            tgctgcATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCa                                           >  2:589587/1‑140 (MQ=255)

                                                                                                 cATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTaa                                      >  1:1360714/1‑140 (MQ=255)

                                                                                                       cgcACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAgg                                <  2:974167/140‑1 (MQ=255)

                                                                                                       cgcACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAgg                                <  1:983449/140‑1 (MQ=255)

                                                                                                       cgcACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAgg                                >  1:1688436/1‑140 (MQ=255)

                                                                                                        gcACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGt                               >  2:895619/1‑140 (MQ=255)

                                                                                                         cACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTg                              >  1:1556460/1‑140 (MQ=255)

                                                                                                         cACGGGCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTg                              >  1:189770/1‑140 (MQ=255)

                                                                                                           cGGGCAATCGCCACACGCTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGCGAACCAGCTAAAACAAGTgcg                            >  2:1516562/1‑140 (MQ=255)

                                                                                                            gggCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTgcgc                           <  1:1817535/140‑1 (MQ=255)

                                                                                                            gggCAATCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTgcgc                           >  2:1343761/1‑140 (MQ=255)

                                                                                                                 aTCGCCACACGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGCAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGat                      >  2:146010/1‑139 (MQ=255)

                                                                                                                      cacaCGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCg                 <  1:573136/140‑1 (MQ=255)

                                                                                                                        cacGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGtg               >  1:170366/1‑140 (MQ=255)

                                                                                                                        cacGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGtg               >  1:1888891/1‑140 (MQ=255)

                                                                                                                        cacGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGtg               >  1:2000629/1‑140 (MQ=255)

                                                                                                                          cGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGtgct             >  1:366516/1‑140 (MQ=255)

                                                                                                                          cGTTGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGtgct             >  1:1674480/1‑140 (MQ=255)

                                                                                                                            ttGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGtgctgc           >  1:299653/1‑140 (MQ=255)

                                                                                                                            ttGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGtgctgc           >  1:1448411/1‑140 (MQ=255)

                                                                                                                            ttGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGtgctgc           >  1:801782/1‑140 (MQ=255)

                                                                                                                            ttGCTGCTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGtgctgc           >  1:883230/1‑140 (MQ=255)

                                                                                                                             tgctgcTGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCGCCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGTGCTGcc          >  1:1917260/1‑140 (MQ=255)

                                                                                                                              gctgctGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGTGCTGCCg         >  2:1943597/1‑140 (MQ=255)

                                                                                                                              gctgctGGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGTGCTGCCg         >  1:1244564/1‑140 (MQ=255)

                                                                                                                               ctgctgGCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGTGCTGCCGa        <  2:1131134/140‑1 (MQ=255)

                                                                                                                                    ggCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGTGCTGCCGAgcgcg   <  1:589587/140‑1 (MQ=255)

                                                                                                                                    ggCCTCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGTGCTGCCGAgcgcg   <  2:1115528/140‑1 (MQ=255)

                                                                                                                                     gcctccGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGTGCTGCCGAgcgcgc  <  2:1244564/140‑1 (MQ=255)

TCTGGTTGATGTCGCGCAGGGTGTCCATCACGATGCGCGCTGATTCTGGGTCCAGCGAGGCGATGGGTTCATCGGCCAGAATCACTTTCGCCTGCTGCATCAGCGCACGGGCAATCGCCACACGTTGCTGCTGGCCGCCGGAGAGGGTGGAAACGCGCTGATGGGCAAAATGCACCATGCCAACGCGGGTCAGCGCCTGTAACGCGCGCTGTTTCTGCTCGCCGGTGAACCAGCTAAAACAGGTGCGCCAGAACGGCGTGCTGCCGAGCGCGC  >  NC_000913/4324565‑4324837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A