Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F48 I1 R1	76	74.1	2532288	99.0%	2506965	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,203,242	G→T	Q439H (CAG→CAT)	zraS →	sensory histidine kinase ZraS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,203,242	0	G	T	100.0%	280.7 / NA	78	Q439H (CAG→CAT)	zraS	sensory histidine kinase ZraS
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (34/44); total (34/44)

CGACAGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCA  >  NC_000913/4203107‑4203374

cGACAGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCg                                                                                                                                  <  1:552886/140‑1 (MQ=255)

cGACAGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCg                                                                                                                                  <  2:1134951/140‑1 (MQ=255)

  aCAGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCa                                                                                                                                >  1:854238/1‑140 (MQ=255)

  aCAGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCa                                                                                                                                <  2:1118/140‑1 (MQ=255)

    aGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAg                                                                                                                              >  2:650187/1‑140 (MQ=255)

     gCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGc                                                                                                                             <  1:583158/140‑1 (MQ=255)

     gCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGc                                                                                                                             <  2:279250/140‑1 (MQ=255)

     gCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGc                                                                                                                             >  1:147093/1‑140 (MQ=255)

      cGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGcc                                                                                                                            >  1:89813/1‑140 (MQ=255)

      cGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGcc                                                                                                                            <  1:363681/140‑1 (MQ=255)

      cGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGcc                                                                                                                            >  2:174295/1‑140 (MQ=255)

         tAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCagg                                                                                                                         >  1:679093/1‑140 (MQ=255)

               aaTTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTTCCGGTCGTGCATACTATCTTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGaa                                                                                                                   <  2:844185/140‑1 (MQ=255)

               aaTTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGaa                                                                                                                   <  2:679093/140‑1 (MQ=255)

                aTTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGaaa                                                                                                                  <  1:1203461/140‑1 (MQ=255)

                           tCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGACGTGCATAACATTGTTGAACAACACGGTGGTACAACTCATGTCACAAGCCAGCAGGGAAAAGGCTCAACGt                                                                                                       <  2:1111282/140‑1 (MQ=255)

                            cAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGtt                                                                                                      <  1:141766/140‑1 (MQ=255)

                            aaGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGtt                                                                                                      <  2:89813/139‑1 (MQ=255)

                             aGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTc                                                                                                     <  2:267920/140‑1 (MQ=255)

                               cTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCAc                                                                                                   <  1:89769/140‑1 (MQ=255)

                                  gATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCct                                                                                                <  2:842036/140‑1 (MQ=255)

                                    tGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCctct                                                                                              >  2:1049231/1‑140 (MQ=255)

                                    tGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCctct                                                                                              >  2:211489/1‑140 (MQ=255)

                                    tGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCctct                                                                                              <  1:650187/140‑1 (MQ=255)

                                       cATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGc                                                                                           <  2:236085/140‑1 (MQ=255)

                                         tCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCtt                                                                                         >  1:18809/1‑140 (MQ=255)

                                         tCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCtt                                                                                         >  1:28004/1‑140 (MQ=255)

                                         tCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCtt                                                                                         <  1:452099/140‑1 (MQ=255)

                                            tCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCg                                                                                      >  1:1035909/1‑140 (MQ=255)

                                            tCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCg                                                                                      >  1:829599/1‑140 (MQ=255)

                                             cACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCgg                                                                                     <  1:528059/140‑1 (MQ=255)

                                              aCTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGt                                                                                    <  2:147093/140‑1 (MQ=255)

                                               cTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTc                                                                                   <  1:1231514/140‑1 (MQ=255)

                                               atCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTc                                                                                   <  2:1011913/139‑1 (MQ=255)

                                                   atACTTCACCACTAAAGCCGAAGGCACCGGATGGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCGTCTGGCTTCCGGTCAata                                                                               <  2:691978/139‑1 (MQ=255)

                                                    tACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCCTAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCtt                                                                                         >  2:668342/1‑129 (MQ=255)

                                                    tACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCtt                                                                                         <  1:668342/129‑1 (MQ=255)

                                                    tACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAatat                                                                              >  1:328206/1‑140 (MQ=255)

                                                    tACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAatat                                                                              >  1:902593/1‑140 (MQ=255)

                                                     aCTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATAtt                                                                             <  1:227981/140‑1 (MQ=255)

                                                       ttCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTAc                                                                           >  1:107244/1‑140 (MQ=255)

                                                         caccacTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTAcgc                                                                         >  2:779000/1‑140 (MQ=255)

                                                          accacTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTAcgcg                                                                        >  1:174469/1‑140 (MQ=255)

                                                             acTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTaa                                                                     <  2:697518/140‑1 (MQ=255)

                                                              cTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAg                                                                    >  1:483496/1‑140 (MQ=255)

                                                              cTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAg                                                                    >  2:1162656/1‑140 (MQ=255)

                                                               tAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAgg                                                                   <  2:328206/140‑1 (MQ=255)

                                                                aaaGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGa                                                                  <  1:174295/140‑1 (MQ=255)

                                                                aaaGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGa                                                                  <  2:902593/140‑1 (MQ=255)

                                                                   gCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGAccc                                                               >  1:793607/1‑140 (MQ=255)

                                                                       aaGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAA‑TCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAg                                                          >  2:667626/1‑140 (MQ=255)

                                                                          gCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGa                                                        <  2:1035909/140‑1 (MQ=255)

                                                                          gCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGa                                                        <  1:1049231/140‑1 (MQ=255)

                                                                             ccGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGa                                                     >  2:597841/1‑140 (MQ=255)

                                                                              cGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGAc                                                    >  1:137011/1‑140 (MQ=255)

                                                                               ggATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACg                                                   <  2:174469/140‑1 (MQ=255)

                                                                                   tGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACg                                               <  1:1162656/140‑1 (MQ=255)

                                                                                   tGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACg                                               <  2:28004/140‑1 (MQ=255)

                                                                                    ggggCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGa                                              <  2:137011/140‑1 (MQ=255)

                                                                                       gCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGataa                                           <  1:891551/140‑1 (MQ=255)

                                                                                          ggCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAatat                                        <  2:1230455/140‑1 (MQ=255)

                                                                                          ggCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAatat                                        >  1:19061/1‑140 (MQ=255)

                                                                                             ggTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGa                                     <  2:854238/140‑1 (MQ=255)

                                                                                                  tGCATAATATTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTc                                <  1:1021402/140‑1 (MQ=255)

                                                                                                      taataTTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCtggt                            <  1:597841/140‑1 (MQ=255)

                                                                                                         tatTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGTCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCtggtggt                         >  1:766202/1‑140 (MQ=255)

                                                                                                         tatTGTTGAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCtggtggt                         >  2:1120086/1‑140 (MQ=255)

                                                                                                               tgAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGgatga                   <  2:860098/140‑1 (MQ=255)

                                                                                                               tgAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGgatga                   <  2:959167/140‑1 (MQ=255)

                                                                                                               tgAACAACACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGgatga                   <  2:483496/140‑1 (MQ=255)

                                                                                                                 aacaacACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGatgatg                 >  2:647879/1‑140 (MQ=255)

                                                                                                                 aacaacACGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGatgatg                 >  2:953127/1‑140 (MQ=255)

                                                                                                                  acaacaCGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGAtgatga                >  2:634385/1‑140 (MQ=255)

                                                                                                                   caacaCGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGAc               >  1:718740/1‑140 (MQ=255)

                                                                                                                   caacaCGGTGGTACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGAc               >  2:1209600/1‑140 (MQ=255)

                                                                                                                        cGGTGGTACAA‑TCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGc         <  1:667626/140‑1 (MQ=255)

                                                                                                                            ggtACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCAc      <  1:1209600/140‑1 (MQ=255)

                                                                                                                              tACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTg    >  1:602781/1‑140 (MQ=255)

                                                                                                                              tACAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTg    >  2:175767/1‑140 (MQ=255)

                                                                                                                                cAATTCATGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCa  >  2:270216/1‑140 (MQ=255)

CGACAGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCA  >  NC_000913/4203107‑4203374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A