Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A16 F48 I1 R1	61	131.2	4447032	99.1%	4407008	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,267,923	C→T	H24Y (CAC→TAC)	yhaB →	protein YhaB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,267,923	0	C	T	100.0%	552.2 / NA	152	H24Y (CAC→TAC)	yhaB	protein YhaB
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (84/68); total (84/68)

Only 100 of 158 total aligned reads displayed.

TGCGAAAGAACCCTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATCACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATAACTGCATTGAATTTC  >  NC_000913/3267787‑3268057

tGCGAAAGAACCCTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATtaca                                                                                                                                     >  2:618087/1‑140 (MQ=255)

tGCGAAAGAACCCTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATtaca                                                                                                                                     >  1:429442/1‑140 (MQ=255)

tGCGAAAGAACCCTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATtaca                                                                                                                                     >  1:1702240/1‑140 (MQ=255)

tGCGAAAGAACCCTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATtaca                                                                                                                                     >  1:1580452/1‑140 (MQ=255)

  cGAAAGAACCCTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAAt                                                                                                                                   >  1:1095619/1‑140 (MQ=255)

  cGAAAGAACCCTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAAt                                                                                                                                   >  2:1302088/1‑140 (MQ=255)

  cGAAAGAACCCTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAAt                                                                                                                                   >  2:1336562/1‑140 (MQ=255)

  cGAAAGAACCCTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGAAAAGGCAGGCATCAATGAAAGGCTCCCCAATTGCGCATATTTTTCACCCTTAAATCCCGCCAATGCACGCAGTGGTTAACAATTACAAt                                                                                                                                   <  2:541711/140‑1 (MQ=255)

    aaaGAACCCTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAg                                                                                                                                 <  1:1162166/140‑1 (MQ=255)

    aaaGAACCCTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAg                                                                                                                                 >  1:1342271/1‑140 (MQ=255)

      aGAACCCTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGaa                                                                                                                               <  1:618087/140‑1 (MQ=255)

      aGAACCCTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGaa                                                                                                                               <  2:1503595/140‑1 (MQ=255)

          cccTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAatat                                                                                                                           >  1:470215/1‑140 (MQ=255)

               cGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGatt                                                                                                                      >  1:2133664/1‑140 (MQ=255)

                     aaaTAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGa                                                                                                                <  2:429442/140‑1 (MQ=255)

                     aaaTAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATAAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGa                                                                                                                <  2:1095619/140‑1 (MQ=255)

                      aaTAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGAc                                                                                                               <  1:578293/140‑1 (MQ=255)

                         aaGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGt                                                                                                            >  1:2212305/1‑140 (MQ=255)

                              tCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGTACGGTaaaaa                                                                                                       >  1:114302/1‑140 (MQ=255)

                                 attattGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAaaagaa                                                                                                    <  2:1580452/140‑1 (MQ=255)

                                      tgtttgtCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGttt                                                                                               >  2:352051/1‑140 (MQ=255)

                                       gtttgtCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTg                                                                                              >  1:2076594/1‑140 (MQ=255)

                                        tttgtCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGc                                                                                             >  2:1452847/1‑140 (MQ=255)

                                         ttgtCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCGTATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCa                                                                                            >  1:1981317/1‑140 (MQ=255)

                                          tgtCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGTTAAAAAGAAAGTTTCCaa                                                                                           >  1:1068817/1‑139 (MQ=255)

                                          tgtCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAg                                                                                           >  1:176367/1‑140 (MQ=255)

                                          tgtCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAg                                                                                           >  1:1784767/1‑140 (MQ=255)

                                          tgtCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAg                                                                                           >  1:1070316/1‑140 (MQ=255)

                                          tgtCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAg                                                                                           >  1:1523331/1‑140 (MQ=255)

                                          tgtCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAg                                                                                           >  1:946218/1‑140 (MQ=255)

                                          tgtCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAg                                                                                           >  1:609148/1‑140 (MQ=255)

                                          tgtCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAg                                                                                           >  1:467474/1‑140 (MQ=255)

                                          tgtCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAg                                                                                           >  2:1629157/1‑140 (MQ=255)

                                            taatgatgACAAGGCAGGCACAAATGAAAGGCTTCCCAATTGCGCATATTTTTCCCCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGaa                                                                                         <  2:1342271/138‑1 (MQ=255)

                                            tCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGaa                                                                                         >  2:102309/1‑140 (MQ=255)

                                            tCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGaa                                                                                         >  2:527762/1‑140 (MQ=255)

                                                  tgaCAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGtc                                                                                   >  1:1034738/1‑140 (MQ=255)

                                                    aCAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCCCCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGtctc                                                                                 <  1:301333/140‑1 (MQ=255)

                                                      aaGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTcca                                                                               >  1:2095091/1‑140 (MQ=255)

                                                        ggcaggcaTCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTccacc                                                                             >  1:2049509/1‑140 (MQ=255)

                                                          caggcaTCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATCGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCaa                                                                           >  1:78760/1‑140 (MQ=255)

                                                             gcaTCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGa                                                                        >  1:70003/1‑140 (MQ=255)

                                                                  aaTGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTta                                                                   >  1:1050341/1‑140 (MQ=255)

                                                                  aaTGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTta                                                                   >  2:1107723/1‑140 (MQ=255)

                                                                   aTGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAAt                                                                          >  2:638864/1‑132 (MQ=255)

                                                                    tGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTtaat                                                                 >  1:658766/1‑140 (MQ=255)

                                                                    agAAAGGCTTCCCAATTGCGCATTTTTTTCCCCCTTCAAACCCGGCAAAGCCAGCAGTTGTTAAAAAATAAAAAAAAAATAATGAATAATGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTtaat                                                                 <  2:1068817/139‑1 (MQ=255)

                                                                          gtttCCCAATTCCGCATTTTTTTCACCCTTAAACCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAAtt                                                           <  2:234167/138‑1 (MQ=255)

                                                                          gCTACCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAAtt                                                           <  2:590183/140‑1 (MQ=255)

                                                                           cTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAAttt                                                          <  2:467474/140‑1 (MQ=255)

                                                                           cTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAAttt                                                          <  2:1070316/140‑1 (MQ=255)

                                                                           cTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAAttt                                                          >  1:1563154/1‑140 (MQ=255)

                                                                            ttCCCAATTGCGCATATTTTTCCCCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTa                                                         <  1:518542/140‑1 (MQ=255)

                                                                            ttCCCAATTGCGCATATTTTTCACCCTTCAATTCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTa                                                         >  1:1183751/1‑140 (MQ=255)

                                                                            ttCCAAATTGCGAATATTTTTCACCCTACAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTa                                                         <  2:1702240/140‑1 (MQ=255)

                                                                             tCCCAATTGCGCATTTTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTAc                                                        <  2:1809367/140‑1 (MQ=255)

                                                                             tCCCAATTGCGAATATTTTTCACCCTTAAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTAc                                                        <  2:1717230/140‑1 (MQ=255)

                                                                              cccAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACa                                                       >  1:1268839/1‑140 (MQ=255)

                                                                              cccAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACa                                                       >  1:875299/1‑140 (MQ=255)

                                                                                  aTTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGtat                                                   <  2:2076594/140‑1 (MQ=255)

                                                                                    tGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATaa                                                 >  1:788961/1‑140 (MQ=255)

                                                                                     gcgcATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAg                                                >  2:227924/1‑140 (MQ=255)

                                                                                        cATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAGATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTaa                                             >  1:1643084/1‑140 (MQ=255)

                                                                                        cATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTaa                                             >  2:1999886/1‑140 (MQ=255)

                                                                                            tttttCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGaa                                         <  2:2133664/140‑1 (MQ=255)

                                                                                            tttttCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGaa                                         <  2:129037/140‑1 (MQ=255)

                                                                                              tttCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACt                                       <  1:1327090/140‑1 (MQ=255)

                                                                                                 cACCCTTCAATTCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCg                                    <  2:1183751/140‑1 (MQ=255)

                                                                                                 cACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCg                                    <  1:17741/140‑1 (MQ=255)

                                                                                                 cACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCg                                    <  2:788961/140‑1 (MQ=255)

                                                                                                  aCCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCgg                                   <  2:609148/140‑1 (MQ=255)

                                                                                                  aCCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCgg                                   <  1:712976/140‑1 (MQ=255)

                                                                                                  aCCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCgg                                   <  2:176367/140‑1 (MQ=255)

                                                                                                  aCCCTTAAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCgg                                   <  2:911347/140‑1 (MQ=255)

                                                                                                   cccTTCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGga                                  <  1:1188105/140‑1 (MQ=255)

                                                                                                      ttCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGagag                               >  2:411750/1‑140 (MQ=255)

                                                                                                       tCAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGt                              >  1:96992/1‑140 (MQ=255)

                                                                                                        cAATCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGta                             <  1:901064/140‑1 (MQ=255)

                                                                                                           tCCCGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGtatta                          <  2:1784767/140‑1 (MQ=255)

                                                                                                              cGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCt                       <  1:1302088/140‑1 (MQ=255)

                                                                                                              cGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCt                       >  2:746555/1‑140 (MQ=255)

                                                                                                              cGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCt                       <  1:1849154/140‑1 (MQ=255)

                                                                                                              cGCCAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCt                       >  2:1620067/1‑140 (MQ=255)

                                                                                                                ccAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGc                     >  2:1477611/1‑140 (MQ=255)

                                                                                                                ccAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGc                     >  2:828260/1‑140 (MQ=255)

                                                                                                                ccAATGCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGc                     <  1:195418/140‑1 (MQ=255)

                                                                                                                     gCACGCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATaa                <  2:1977427/140‑1 (MQ=255)

                                                                                                                     gCACGCAGTGGTTAACAATTACAATAGAAATATCGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATaa                <  2:78760/140‑1 (MQ=255)

                                                                                                                         gCAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATAACTGc            <  2:1570122/140‑1 (MQ=255)

                                                                                                                          cAGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATAACTGCa           <  2:1657856/140‑1 (MQ=255)

                                                                                                                           aGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATAACTGCAt          >  2:2117483/1‑140 (MQ=255)

                                                                                                                           aGTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATAACTGCAt          >  2:1980454/1‑140 (MQ=255)

                                                                                                                            gTGGTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATAACTGCAtt         <  1:634704/140‑1 (MQ=255)

                                                                                                                              ggTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATAACTGCATTGa       <  2:875299/140‑1 (MQ=255)

                                                                                                                              ggTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATAACTGCATTGa       >  2:1923814/1‑140 (MQ=255)

                                                                                                                               gTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATAACTGCATTGaa      >  1:1597477/1‑140 (MQ=255)

                                                                                                                               gTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATAACTGCATTGaa      >  1:1661459/1‑140 (MQ=255)

                                                                                                                               gTTAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATAACTGCATTGaa      >  1:1255018/1‑140 (MQ=255)

                                                                                                                                ttAACAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATAACTGCATTGAAt     <  1:2117483/140‑1 (MQ=255)

                                                                                                                                  aaCAATTACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATAACTGCATTGAAttt   >  2:161013/1‑140 (MQ=255)

TGCGAAAGAACCCTGCGAGGAAAATAAGCATCTATTATTGTTTGTCATGATGACAAGGCAGGCATCAATGAAAGGCTTCCCAATTGCGCATATTTTTCACCCTTCAATCCCGCCAATGCACGCAGTGGTTAACAATCACAATAGAAATATTGATTATTGGACGGTAAAAAGAAAGTTTGCAGAAATTGTCTCCACCAATGACGTTAATAAAATTTACAGTATAAGTAATGAACTGCGGAGAGTATTATCTGCAATAACTGCATTGAATTTC  >  NC_000913/3267787‑3268057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A