Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A16 F48 I1 R1	61	131.2	4447032	99.1%	4407008	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,495,739	G→T	V157V (GTC→GTA)	ahr ←	aldehyde reductase, NADPH‑dependent

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,495,739	0	G	T	97.9%	338.6 / ‑3.5	96	V157V (GTC→GTA)	ahr	aldehyde reductase, NADPH‑dependent
Reads supporting (aligned to +/- strand): ref base G (1/1); new base T (53/41); total (54/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGGCACCGCACC  >  NC_000913/4495608‑4495873

ttAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGAt                                                                                                                                >  2:1842212/1‑140 (MQ=255)

    aaCTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATAccg                                                                                                                            <  1:1273306/140‑1 (MQ=255)

    aaCAAAAGGCTTCCCCCCCCCACCCCATTGGGGGAAGAAGTTTAATGGCGATATCCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATAccg                                                                                                                            <  2:145256/140‑1 (MQ=255)

         aaGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTTATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGca                                                                                                                       >  1:1759025/1‑140 (MQ=255)

         aaGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGca                                                                                                                       >  1:511851/1‑140 (MQ=255)

         aaGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGca                                                                                                                       >  1:643741/1‑140 (MQ=255)

              tGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCacaaca                                                                                                                  >  1:2052809/1‑140 (MQ=255)

              tGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCacaaca                                                                                                                  >  1:1548942/1‑140 (MQ=255)

               gccACCTCGCACCCCATGGGGTGAAGAATTTTTATGGCGATATCCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAg                                                                                                                 <  2:1215999/138‑1 (MQ=255)

                tCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATTTGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGc                                                                                                                >  1:1493957/1‑140 (MQ=255)

                tCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGc                                                                                                                >  1:2009695/1‑140 (MQ=255)

                tCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGc                                                                                                                >  2:1741977/1‑140 (MQ=255)

                   ccTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGc                                                                                                             >  1:1934188/1‑140 (MQ=255)

                    cTCCCATCCCATTGCGTGAAGAATTTTTATAGCGATATCCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGcc                                                                                                            <  2:781339/140‑1 (MQ=255)

                        cATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCcggc                                                                                                        >  1:11501/1‑140 (MQ=255)

                         acccaaTTACGTACAGAAGTTTAAGAGGGGTGCG‑CCCAGCACCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCcggcg                                                                                                       <  2:1591533/135‑1 (MQ=255)

                         aTCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCcggcg                                                                                                       <  1:2192859/140‑1 (MQ=255)

                         aTCCCATGGCGTGAAGAAGTTGTATAGCAATATCCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCcggcg                                                                                                       <  2:80616/140‑1 (MQ=255)

                         aTCCAATTGCGTGAAAAGTTTTTAGAGCGATATCCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCcggcg                                                                                                       <  2:1915046/140‑1 (MQ=255)

                          tCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCcggcgg                                                                                                      >  2:1988554/1‑140 (MQ=255)

                           cccttcgCGTACAGAAGTTCTATAACGATAGGCCCACGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGa                                                                                                     <  2:2131622/134‑1 (MQ=255)

                           cccATTGCGTGCAGAGGTTTAATAGCGATACCCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGa                                                                                                     <  2:643741/140‑1 (MQ=255)

                           ccaaTTGCGTGAAAAATTTTTATAGCGTTATCCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGa                                                                                                     <  2:511851/137‑1 (MQ=255)

                            ccATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGAc                                                                                                    <  1:1842212/140‑1 (MQ=255)

                             cATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACt                                                                                                   <  1:1741977/140‑1 (MQ=255)

                             aaTTGGGTGCAAAAGTTTTAGAGAGTTACGCCCAAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACt                                                                                                   <  2:2009695/139‑1 (MQ=255)

                              atggggTGCAGAAGTTTTATAGCAATACCCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTc                                                                                                  <  2:1589214/135‑1 (MQ=255)

                              atggCGTGCAGAAGTTTTACAGCGATATCCCCCACC‑CCGCCAATACCAATTGCCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACA‑‑‑GTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGat                                                                                               <  1:1742123/137‑1 (MQ=255)

                              aTTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTc                                                                                                  >  2:523069/1‑140 (MQ=255)

                                   gggCAAAATTTTTATAGCGATAGCCCTAAGC‑CCGCCAATACCAATTACCCCACCGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATTCCGCCGCACAACAGCGGCCCGGCGGACTCGatat                                                                                             <  2:1168936/138‑1 (MQ=255)

                                   gTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGatat                                                                                             >  1:2071669/1‑140 (MQ=255)

                                     gCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCa                                                                                           <  1:1549084/140‑1 (MQ=255)

                                      cAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCaa                                                                                          >  1:1635700/1‑140 (MQ=255)

                                      aaaaaGTTTTATAGCATTATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCaa                                                                                          <  2:529959/137‑1 (MQ=255)

                                             tttATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTc                                                                                   <  2:1741192/140‑1 (MQ=255)

                                             tttATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTc                                                                                   <  1:1311442/140‑1 (MQ=255)

                                                   gCGATCTGCCCAAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAg                                                                             <  1:44080/140‑1 (MQ=255)

                                                   gCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAg                                                                             <  2:1635700/140‑1 (MQ=255)

                                                   gCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAg                                                                             >  1:715416/1‑140 (MQ=255)

                                                      atatGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTgg                                                                          >  1:430107/1‑140 (MQ=255)

                                                        atGCCCCACC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGaa                                                                        <  1:1362693/140‑1 (MQ=255)

                                                         tGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAAt                                                                       <  2:430107/140‑1 (MQ=255)

                                                         tGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAAt                                                                       <  2:1605678/140‑1 (MQ=255)

                                                         tGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAAt                                                                       <  1:783962/140‑1 (MQ=255)

                                                              cAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCAccc                                                                  >  1:200146/1‑140 (MQ=255)

                                                                gC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCAt                                                                >  1:1054602/1‑140 (MQ=255)

                                                                gC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCAt                                                                >  2:1995704/1‑140 (MQ=255)

                                                                gC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCAt                                                                >  1:954770/1‑140 (MQ=255)

                                                                 c‑ccGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCAtt                                                               >  1:1623344/1‑140 (MQ=255)

                                                                    cGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGc                                                             >  1:1089720/1‑140 (MQ=255)

                                                                      ccAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCa                                                           >  1:1185130/1‑140 (MQ=255)

                                                                      ccAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCa                                                           >  2:349918/1‑140 (MQ=255)

                                                                      ccAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCa                                                           >  1:539731/1‑140 (MQ=255)

                                                                      ccAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCa                                                           >  1:1018518/1‑140 (MQ=255)

                                                                      ccAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCa                                                           >  1:295791/1‑140 (MQ=255)

                                                                        aaTACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGt                                                         <  2:1054602/140‑1 (MQ=255)

                                                                          tACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTcc                                                       <  1:1988554/140‑1 (MQ=255)

                                                                             cAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCcgca                                                    <  1:541845/140‑1 (MQ=255)

                                                                                ttACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCcgcacgc                                                 >  1:1484908/1‑140 (MQ=255)

                                                                                 tACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGTCAGTCcgcacgca                                                >  1:1123760/1‑140 (MQ=255)

                                                                                 tACCCCAACGCGGCTGGAAGCAGTGATATGGTGCATCAATAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCcgcacgca                                                >  1:511117/1‑140 (MQ=255)

                                                                                   ccccAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAAc                                              >  1:304530/1‑140 (MQ=255)

                                                                                    cccAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACt                                             >  1:603363/1‑140 (MQ=255)

                                                                                       aaCGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTtct                                          >  1:1370054/1‑140 (MQ=255)

                                                                                       aaCGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTtct                                          >  2:1882730/1‑140 (MQ=255)

                                                                                        aCGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTtctc                                         <  2:539731/140‑1 (MQ=255)

                                                                                             gCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCaa                                    <  2:304530/140‑1 (MQ=255)

                                                                                                  tAGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCa                               <  2:1484908/140‑1 (MQ=255)

                                                                                                   aGCAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCAc                              <  1:523069/140‑1 (MQ=255)

                                                                                                     cAGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGTCAGTCCGCACGCAACTTCTCGGCAAAGCCACcg                            <  2:2052809/140‑1 (MQ=255)

                                                                                                      aGTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACcgc                           >  2:1361988/1‑140 (MQ=255)

                                                                                                       gTGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCCCCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACcgcg                          <  2:1934188/140‑1 (MQ=255)

                                                                                                        tGATATGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGa                         <  2:295791/140‑1 (MQ=255)

                                                                                                             tGGTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCAt                    >  1:399745/1‑140 (MQ=255)

                                                                                                              ggTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATa                   >  1:71822/1‑140 (MQ=255)

                                                                                                              ggTGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATa                   <  2:1370054/140‑1 (MQ=255)

                                                                                                                tGCATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAAt                 >  2:528806/1‑140 (MQ=255)

                                                                                                                  cATCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAAtcg               >  1:2130842/1‑140 (MQ=255)

                                                                                                                   aTCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGTCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAAtcgt              <  2:1123760/140‑1 (MQ=255)

                                                                                                                   aTCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAAtcgt              <  2:603363/140‑1 (MQ=255)

                                                                                                                   aTCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAAtcgt              <  2:2071669/140‑1 (MQ=255)

                                                                                                                   aTCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAAtcgt              <  2:1185130/140‑1 (MQ=255)

                                                                                                                    tCAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAAtcgtt             >  2:1267458/1‑139 (MQ=255)

                                                                                                                     cAACAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAAtcgtcg            >  1:2045649/1‑140 (MQ=255)

                                                                                                                        cAGTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGgca         <  2:2130842/140‑1 (MQ=255)

                                                                                                                          gTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGgcacc       >  1:1279343/1‑140 (MQ=255)

                                                                                                                          gTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGgcacc       >  1:1726860/1‑140 (MQ=255)

                                                                                                                          gTGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGgcacc       >  1:902801/1‑140 (MQ=255)

                                                                                                                           tGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGgcaccg      >  1:91518/1‑140 (MQ=255)

                                                                                                                           tGGTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGgcaccg      >  1:477914/1‑140 (MQ=255)

                                                                                                                            ggTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGgcaccgc     >  2:1017971/1‑140 (MQ=255)

                                                                                                                             gTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGgcaccgca    >  1:1624617/1‑140 (MQ=255)

                                                                                                                             gTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGgcaccgca    >  1:1864491/1‑140 (MQ=255)

                                                                                                                             gTTTAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGgcaccgca    >  1:1990637/1‑140 (MQ=255)

                                                                                                                              tttAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGgcaccgcac   >  2:272034/1‑140 (MQ=255)

                                                                                                                              tttAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGgcaccgcac   >  1:54460/1‑140 (MQ=255)

                                                                                                                               ttAAATACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCGGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGgcaccgcacc  >  1:856011/1‑140 (MQ=255)

TTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGC‑CCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAGTGGAATCACCCATTGCCAGTCCGCACGCAACTTCTCGGCAAAGCCACCGCGATTCATAATCGTCGGCACCGCACC  >  NC_000913/4495608‑4495873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A