Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A19 F48 I1 R1	83	81.6	2760494	99.1%	2735649	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,931,124	C→A	P24T (CCC→ACC)	ygdG →	flap endonuclease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,931,124	0	C	A	100.0%	218.3 / NA	64	P24T (CCC→ACC)	ygdG	flap endonuclease
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (40/24); total (40/24)

TCATCCAGCCGTAGCCTGTTCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGCCCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAGCGTTTACCAGATTACAAAGC  >  NC_000913/2930988‑2931257

tcATCCAGCCGTAGCCTGTTCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCt                                                                                                                                    <  2:210558/140‑1 (MQ=255)

        ccGTAGCCTGTTCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGaa                                                                                                                            <  1:498948/140‑1 (MQ=255)

        ccGTAGCCTGTTCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGGTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGaa                                                                                                                            <  2:1334786/140‑1 (MQ=255)

         cGTAGCCTGTTCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGaaa                                                                                                                           <  2:1261631/140‑1 (MQ=255)

              ccTGTTCGGGCATCGAATGTTACCCTTAGCGCCTGATCTTTAATGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTTTGTCGAAACCTGc                                                                                                                      <  2:620990/140‑1 (MQ=255)

                tGTTCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCa                                                                                                                    >  2:958768/1‑140 (MQ=255)

                  ttCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGTGTCGACCTGTGTCGAAACCTGCCAGc                                                                                                                  >  2:950529/1‑140 (MQ=255)

                  ttCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGc                                                                                                                  >  1:861913/1‑140 (MQ=255)

                  ttCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGc                                                                                                                  >  1:10687/1‑140 (MQ=255)

                  ttCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGc                                                                                                                  >  1:1331499/1‑140 (MQ=255)

                  ttCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGc                                                                                                                  >  2:124858/1‑140 (MQ=255)

                  ttCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGc                                                                                                                  >  1:181635/1‑140 (MQ=255)

                  ttCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGc                                                                                                                  >  1:210270/1‑140 (MQ=255)

                   tCCGGGATCGAGTGTTACCATCGTCGGCTGCAGTATAAGGCGCTTCTCGTGGTTGTGCATTTGCTTATTGACGAGGCGCCGAATCTTTTTCGTCGCATTCATGCCGTTCAGGGGTCGCCCTGTGTCCAAGCCTCCCAGcg                                                                                                                 <  2:700310/140‑2 (MQ=255)

                   tCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCa                                                                                                                 <  1:786300/140‑1 (MQ=255)

                      ggCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATgc                                                                                                              <  2:123002/140‑1 (MQ=255)

                      ggCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATgc                                                                                                              >  2:1339273/1‑140 (MQ=255)

                            gAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCgt                                                                                                        >  2:619697/1‑139 (MQ=255)

                            gAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCgt                                                                                                        >  2:571926/1‑139 (MQ=255)

                            gAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGa                                                                                                        <  2:10687/140‑1 (MQ=255)

                            gAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGa                                                                                                        <  2:991516/140‑1 (MQ=255)

                            gAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTACCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCgt                                                                                                        >  2:494039/1‑139 (MQ=255)

                                 ttACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGc                                                                                                   <  2:181635/140‑1 (MQ=255)

                                 ttACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGc                                                                                                   <  1:104322/140‑1 (MQ=255)

                                    cccTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCa                                                                                                >  1:1193515/1‑140 (MQ=255)

                                        tATCGCCTGATCTTTAAGGGCGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCGGTTCCGGGTTCGACCTTTGTCGAAACCTGCCAGCATGCGCCCGCTCAGCTCATTAt                                                                                            >  2:694103/1‑140 (MQ=255)

                                         aTCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGTTCAGCTCATTATg                                                                                           >  2:1080878/1‑140 (MQ=255)

                                         aTCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATg                                                                                           >  2:653443/1‑140 (MQ=255)

                                         aTCGCCTGATCTTTAAGGGGGCTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATg                                                                                           >  2:912092/1‑140 (MQ=255)

                                              cTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCAcag                                                                                      <  1:1028162/140‑1 (MQ=255)

                                               tGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCAcagc                                                                                     <  1:1339273/140‑1 (MQ=255)

                                                 aTCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAAGGGGCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCAcagcca                                                                                   >  1:980795/1‑140 (MQ=255)

                                                        aGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAAcc                                                                            >  1:1365969/1‑140 (MQ=255)

                                                            ggTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCAcg                                                                        >  2:297129/1‑140 (MQ=255)

                                                            ggTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCAcg                                                                        <  1:494039/140‑1 (MQ=255)

                                                             gTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCAcgc                                                                       >  2:408721/1‑140 (MQ=255)

                                                             gTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCAcgc                                                                       >  1:1266587/1‑140 (MQ=255)

                                                             gTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCAcgc                                                                       >  2:621703/1‑140 (MQ=255)

                                                                aTCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGt                                                                    >  1:346834/1‑140 (MQ=255)

                                                                  cGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCg                                                                  <  2:604890/140‑1 (MQ=255)

                                                                          ttCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGttttt                                                          >  2:1003112/1‑140 (MQ=255)

                                                                          ttCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGttttt                                                          >  1:1088546/1‑140 (MQ=255)

                                                                           tCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGTTCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTtg                                                         <  1:1080878/140‑1 (MQ=255)

                                                                                    tATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGTGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGaaa                                                >  2:1290587/1‑140 (MQ=255)

                                                                                    tATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGaaa                                                >  1:937561/1‑140 (MQ=255)

                                                                                         tCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGc                                           <  2:1193515/140‑1 (MQ=255)

                                                                                           gATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAg                                         >  1:538513/1‑140 (MQ=255)

                                                                                            aTGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGt                                        <  1:1375937/140‑1 (MQ=255)

                                                                                            aTGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGt                                        >  1:120729/1‑140 (MQ=255)

                                                                                                   gAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCg                                            <  2:999133/129‑1 (MQ=255)

                                                                                                   gAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCg                                            >  1:999133/1‑129 (MQ=255)

                                                                                                    aaTCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTg                                >  1:559733/1‑140 (MQ=255)

                                                                                                           ttCGTCGCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGtcat                         >  2:548097/1‑140 (MQ=255)

                                                                                                              gtcgCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCGCAGCCAGCCAACCCACGCCGTCGCCGTTTTTGATGATGAAAACCGCACTAGCGGTTGGCGccatcgc                      >  2:823782/1‑138 (MQ=255)

                                                                                                              gtcgCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAg                      >  2:305750/1‑140 (MQ=255)

                                                                                                              gtcgCATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAg                      >  1:451930/1‑140 (MQ=255)

                                                                                                                  cATTCATGCCGTTCAGGTGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAGCGtt                  <  1:950529/140‑1 (MQ=255)

                                                                                                                  cATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAGCGtt                  <  1:297129/140‑1 (MQ=255)

                                                                                                                  cATTCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAGCGtt                  >  1:602235/1‑140 (MQ=255)

                                                                                                                    ttCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAGCGTTTa                <  1:339936/140‑1 (MQ=255)

                                                                                                                    acaaTGCCGTTCAGGGGTAGACCTGTTGCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGGCAACCCACGCGGTCACCGTATTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAGCGTTTa                <  2:100131/137‑1 (MQ=255)

                                                                                                                     tCATGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAGCGTTTAc               >  1:186512/1‑140 (MQ=255)

                                                                                                                       aTGCCGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAGCGTTTACCa             <  1:958768/140‑1 (MQ=255)

                                                                                                                           cGTTCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAGCGTTTACCAGAtt         <  1:621703/140‑1 (MQ=255)

                                                                                                                             ttCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAGCGTTTACCAGATTAc       >  1:897140/1‑140 (MQ=255)

                                                                                                                              tCAGGGGTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAGCGTTTACCAGATTACa      >  2:389081/1‑140 (MQ=255)

                                                                                                                                  gggTCGACCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAGCGTTTACCAGATTACAAAGc  >  2:1244898/1‑140 (MQ=255)

TCATCCAGCCGTAGCCTGTTCCGGCATCGAATGTTACCCTTATCGCCTGATCTTTAAGGGGGTTATCGTGGCTGTTCATTTGCTTATTGTCGATGCACTGAATCTTATTCGTCGCATTCATGCCGTTCAGGGGTCGCCCTGTGTCGAAACCTGCCAGCATGCGCTCGATCAGCTCATTATGCACAGCCAGCCAACCCACGCGGTCGCCGTTTTTGATGATGAAAACCGCAGTAGCGGCTGGCGTCATCAGCGTTTACCAGATTACAAAGC  >  NC_000913/2930988‑2931257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A