Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F48 I1 R1 83 81.6 2760494 99.1% 2735649 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,273,329 G→T G181G (GGC→GGA)  uvrA ← excision nuclease subunit A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,273,3290GT100.0% 237.3 / NA 67G181G (GGC→GGA) uvrAexcision nuclease subunit A
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (30/37);  total (30/37)

CTCCAGCGCGGTTTCAAATGACTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCGCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACGTTA  >  NC_000913/4273194‑4273461
                                                                                                                                       |                                                                                                                                    
cTCCAGCGCGGTTTCAAATGACTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCAt                                                                                                                                  >  2:1054043/1‑140 (MQ=255)
    aGCGCGGTTTCAAATGACTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAAt                                                                                                                              <  1:1289998/140‑1 (MQ=255)
      cgcgGTTTCAAATGACTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATAc                                                                                                                            >  2:473731/1‑140 (MQ=255)
      cgcgGTTTCAAATGACTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATAc                                                                                                                            >  2:1338238/1‑140 (MQ=255)
      cgcgGTTTCAAATGACTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCACAGACTTCTCCATCAATAc                                                                                                                            >  2:108805/1‑140 (MQ=255)
           tttCAAATGACTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCa                                                                                                                       <  1:508824/140‑1 (MQ=255)
           tttCAAATGACTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCa                                                                                                                       <  1:50843/140‑1 (MQ=255)
           tttCAAATGACTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCa                                                                                                                       >  1:746455/1‑140 (MQ=255)
           tttCAAATGACTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCa                                                                                                                       <  2:102198/140‑1 (MQ=255)
           tttCAAATGACTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCa                                                                                                                       <  2:481904/140‑1 (MQ=255)
                aaTGACTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGAt                                                                                                                  >  2:256949/1‑140 (MQ=255)
                     cTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGc                                                                                                             >  2:1080818/1‑140 (MQ=255)
                     cTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGc                                                                                                             <  1:1182710/140‑1 (MQ=255)
                     cTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGc                                                                                                             >  1:926030/1‑140 (MQ=255)
                         gCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTg                                                                                                         >  1:184222/1‑140 (MQ=255)
                         gCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTg                                                                                                         <  2:751294/140‑1 (MQ=255)
                         gCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTg                                                                                                         <  2:355333/140‑1 (MQ=255)
                              aCGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTg                                                                                                    <  2:577748/140‑1 (MQ=255)
                              aCGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCACAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTg                                                                                                    <  1:108805/140‑1 (MQ=255)
                                        aGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTtctc                                                                                          >  2:802960/1‑140 (MQ=255)
                                              tCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTTCAGTTCCAGATATAGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGt                                                                                    >  2:918310/1‑140 (MQ=255)
                                              tCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGt                                                                                    >  1:1059134/1‑140 (MQ=255)
                                              tCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGt                                                                                    >  1:1280727/1‑140 (MQ=255)
                                                  gCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTg                                                                                <  1:916034/140‑1 (MQ=255)
                                                  gCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTg                                                                                <  1:1338238/140‑1 (MQ=255)
                                                                tCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCttt                                                                  >  1:832947/1‑140 (MQ=255)
                                                                tCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCttt                                                                  >  1:1152741/1‑140 (MQ=255)
                                                                tCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCttt                                                                  >  2:683262/1‑140 (MQ=255)
                                                                 cAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTg                                                                 <  1:1325204/140‑1 (MQ=255)
                                                                  aaCCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTgc                                                                <  1:1264072/140‑1 (MQ=255)
                                                                   accaccACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTgcg                                                               <  2:259262/140‑1 (MQ=255)
                                                                   accaccACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTgcg                                                               <  1:473731/140‑1 (MQ=255)
                                                                   accaccACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTgcg                                                               <  1:1080818/140‑1 (MQ=255)
                                                                   accaccACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTgcg                                                               <  2:746455/140‑1 (MQ=255)
                                                                   accaccACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTgcg                                                               <  1:802960/140‑1 (MQ=255)
                                                                   accaccACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTgcg                                                               <  2:211436/140‑1 (MQ=255)
                                                                   accaccACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTgcg                                                               <  1:1054043/140‑1 (MQ=255)
                                                                   accaccACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTGGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTgcg                                                               <  1:491493/140‑1 (MQ=255)
                                                                    acaccacTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTgcgc                                                              <  2:567695/139‑1 (MQ=255)
                                                                     caccacTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGct                                                             <  2:1235241/140‑1 (MQ=255)
                                                                     caccacTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGct                                                             <  2:131270/140‑1 (MQ=255)
                                                                     caccacTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGct                                                             <  2:719685/140‑1 (MQ=255)
                                                                          cTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTa                                                        >  1:1194976/1‑140 (MQ=255)
                                                                                  gTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTgg                                                >  1:1341891/1‑140 (MQ=255)
                                                                                  gTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTgg                                                >  2:287022/1‑140 (MQ=255)
                                                                                   tATGTTTCTTTTGCAGTTCCAGTTTTGGTGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGgc                                               <  2:848489/140‑1 (MQ=255)
                                                                                   tATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGgc                                               <  2:860804/140‑1 (MQ=255)
                                                                                   tATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGgc                                               <  2:832947/140‑1 (MQ=255)
                                                                                     tGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGgcgc                                             >  2:979455/1‑140 (MQ=255)
                                                                                     tGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGgcgc                                             >  2:25512/1‑140 (MQ=255)
                                                                                     tGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGgcgc                                             >  1:188111/1‑140 (MQ=255)
                                                                                     tGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGgcgc                                             >  1:631038/1‑140 (MQ=255)
                                                                                     tGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGgcgc                                             >  1:701223/1‑140 (MQ=255)
                                                                                        ttCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAg                                          >  2:3781/1‑140 (MQ=255)
                                                                                        ttCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAg                                          >  1:527767/1‑140 (MQ=255)
                                                                                         tCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAGt                                         <  2:1059134/140‑1 (MQ=255)
                                                                                            tttGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGgcg                                              <  2:797148/132‑1 (MQ=255)
                                                                                            tttGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGgcg                                              >  1:797148/1‑132 (MQ=255)
                                                                                            tttGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAGTAGc                                      >  1:1273474/1‑140 (MQ=255)
                                                                                             ttGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAGTAGCa                                     >  1:405389/1‑140 (MQ=255)
                                                                                                             ggCGGATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAGTAGCATCAGACGCTTGCCTTc                     >  1:826636/1‑140 (MQ=255)
                                                                                                                 gATCGGAAAGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAGTAGCATCAGACGCTTGCCTTCCGGc                 <  2:1152741/140‑1 (MQ=255)
                                                                                                                        aaGATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACa          <  1:287022/140‑1 (MQ=255)
                                                                                                                          gATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGc        <  2:1273474/140‑1 (MQ=255)
                                                                                                                          gATCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGc        <  2:1280727/140‑1 (MQ=255)
                                                                                                                           aTCGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCa       <  2:184222/140‑1 (MQ=255)
                                                                                                                             cGCAGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACg     <  2:631038/140‑1 (MQ=255)
                                                                                                                                aGACTTCTCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACGTTa  >  2:532624/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                    
CTCCAGCGCGGTTTCAAATGACTCGGCAAGACGTTGGGTAAGATCGTCACGCACCTTGAAGCGATCAACCACCACTTCAATGGTATGTTTCTTTTGCAGTTCCAGTTTTGGCGGATCGGAAAGATCGCAGACTTCGCCATCAATACGAGCACGGATGTAGCCCTGGCTTGCCAGGTTCTCCAGCGTTTTGGTGTGTTCGCCTTTGCGCTCTTTAATGATTGGCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACGTTA  >  NC_000913/4273194‑4273461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A