Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A19 F48 I1 R1	83	81.6	2760494	99.1%	2735649	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,365,091	G→T	P89Q (CCG→CAG)	cutA ←	copper binding protein CutA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,365,091	0	G	T	98.7%	280.3 / ‑3.7	79	coding (266/339 nt)	cutA	copper binding protein CutA
Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (40/38); minor base . (1/0); total (41/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.89e-01

ATTGTGAACGTCCCGGCGCGTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCG  >  NC_000913/4364955‑4365225

aTTGTGAACGTCCCGGCGCGTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCtggg                                                                                                                                      <  2:1168950/140‑1 (MQ=255)

 ttGTGAACGTCCCGGCGCGTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGt                                                                                                                                     <  1:1314874/140‑1 (MQ=255)

  tgtgAACGTCCCGGCGCGTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGtt                                                                                                                                    <  1:1199223/140‑1 (MQ=255)

  tgtgAACGTCCCGGCGCGTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGtt                                                                                                                                    <  2:353688/140‑1 (MQ=255)

    tgAACGTCCCGGCGCGTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGt                                                                                                                                     <  1:202850/137‑1 (MQ=255)

    tgAACGTCCCGGCGCGTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTg                                                                                                                                  >  1:1174764/1‑140 (MQ=255)

    tgAACGTCCCGGCGCGTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGCAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGt                                                                                                                                     >  2:202850/1‑137 (MQ=255)

      aaCGTCCCGGCGCGTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGat                                                                                                                                <  2:1005250/140‑1 (MQ=255)

        cGTCCCGGCGCGTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGatat                                                                                                                              >  2:64404/1‑140 (MQ=255)

          tCCCGGCGCGTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑gg                                                                                                                           <  2:1147050/140‑1 (MQ=255)

           cccGGCGCGTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑Gga                                                                                                                          >  2:1261650/1‑140 (MQ=255)

                cgcgTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGatgatg                                                                                                                     <  1:738382/140‑1 (MQ=255)

                 gcgTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGAtgatga                                                                                                                    <  1:286297/140‑1 (MQ=255)

                    tCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGAc                                                                                                                 >  1:146069/1‑140 (MQ=255)

                    tCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGAc                                                                                                                 >  2:313837/1‑140 (MQ=255)

                    tCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGAc                                                                                                                 >  2:435374/1‑140 (MQ=255)

                        ataatCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCa                                                                                                             <  1:867022/140‑1 (MQ=255)

                        ataatCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCa                                                                                                             <  1:435374/140‑1 (MQ=255)

                          aatCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAgg                                                                                                           <  2:185928/140‑1 (MQ=255)

                          aatCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAgg                                                                                                           <  1:447139/140‑1 (MQ=255)

                                 cAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAgg                                                                                                           >  2:760745/1‑133 (MQ=255)

                                 cAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAgg                                                                                                           <  1:760745/133‑1 (MQ=255)

                                 cAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCca                                                                                                    >  2:935384/1‑140 (MQ=255)

                                      aCGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGt                                                                                               <  1:1137921/140‑1 (MQ=255)

                                      aCGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGt                                                                                               <  1:824167/140‑1 (MQ=255)

                                        ggAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGc                                                                                             <  2:635137/140‑1 (MQ=255)

                                                    aaGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGAGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTgaga                                                                                 >  2:1096172/1‑140 (MQ=255)

                                                         gCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACgg                                                                            >  1:1318915/1‑140 (MQ=255)

                                                           aGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTACCAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTa                                                                          <  2:1036393/140‑1 (MQ=255)

                                                               tCAGCGTTAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGAGCCTGCTGGTGAGATACGGTAGttt                                                                      >  2:359995/1‑140 (MQ=255)

                                                                 aGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGttttt                                                                    >  2:898328/1‑140 (MQ=255)

                                                                 aGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGttttt                                                                    >  1:310877/1‑140 (MQ=255)

                                                                     tAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTaaaa                                                                >  2:422273/1‑140 (MQ=255)

                                                                          aTGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAatcatc                                                           <  2:957689/140‑1 (MQ=255)

                                                                          aTGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGGTTGATAT‑AGATGATGAGACTTCAGGCATTCCAGCAGTGCCTTCTGGTGAGATACGGTAGTCTTTAAAatcatc                                                           <  2:1059722/140‑1 (MQ=255)

                                                                            gCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTg                                                         <  1:333/140‑1 (MQ=255)

                                                                             cGTTGAGCGATGTGAGCTAATCTGCGTCTCCGTGTGTAACTTGTGAAACCAGAAGTTCCAAGCGTTGCTGT‑GGTTGCTAAGACTTCATGCATTCTAGCAGTGCCTGCTGGTAATTTACGGTAGTTTTTAAAATCATCAGc                                                        >  2:1346677/1‑140 (MQ=255)

                                                                             cGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAGACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGc                                                        >  1:194828/1‑140 (MQ=255)

                                                                             cGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGc                                                        >  1:1331025/1‑140 (MQ=255)

                                                                             cGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGc                                                        >  2:415146/1‑140 (MQ=255)

                                                                             cGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGc                                                        <  2:576228/140‑1 (MQ=255)

                                                                             cGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGc                                                        >  1:1057909/1‑140 (MQ=255)

                                                                             cGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGc                                                        >  1:941264/1‑140 (MQ=255)

                                                                             cGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGc                                                        >  1:859943/1‑140 (MQ=255)

                                                                                           agGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTg                                          <  2:604465/140‑1 (MQ=255)

                                                                                            ggTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGc                                         >  1:634632/1‑140 (MQ=255)

                                                                                               aaTCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTcc                                      >  2:1249118/1‑140 (MQ=255)

                                                                                               aaTCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTcc                                      <  2:1331025/140‑1 (MQ=255)

                                                                                                aTCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCt                                        <  1:127909/137‑1 (MQ=255)

                                                                                                aTCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCt                                        >  2:127909/1‑137 (MQ=255)

                                                                                                     tgtCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATATGGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCtt                                 >  1:972451/1‑140 (MQ=255)

                                                                                                     tgtCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTa                                >  1:759723/1‑140 (MQ=255)

                                                                                                     tgtCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTa                                >  2:721766/1‑140 (MQ=255)

                                                                                                     tgtCTCCGTGAGTAACAGGTAAAACCAGAAGTTCCTGGGATTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTATTGCTCCAGCTTa                                >  2:1055042/1‑140 (MQ=255)

                                                                                                      gtCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTAc                               >  2:534688/1‑140 (MQ=255)

                                                                                                       tctcCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTAcc                              >  1:1287777/1‑140 (MQ=255)

                                                                                                         tcCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCtt                            <  2:769516/140‑1 (MQ=255)

                                                                                                         tcCGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCtt                            <  1:240563/140‑1 (MQ=255)

                                                                                                          ccGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATATGGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCtt                            <  2:972451/140‑1 (MQ=255)

                                                                                                          ccGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTc                           >  2:1172684/1‑140 (MQ=255)

                                                                                                           cGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTcc                          <  1:1358286/140‑1 (MQ=255)

                                                                                                           cGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTcc                          >  1:226229/1‑140 (MQ=255)

                                                                                                           cGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTcc                          >  2:68122/1‑140 (MQ=255)

                                                                                                           cGTGTGTAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTcc                          <  2:563466/140‑1 (MQ=255)

                                                                                                            gtgtgtAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTccc                         >  2:1262994/1‑140 (MQ=255)

                                                                                                             tgtgtAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCa                        >  2:212281/1‑140 (MQ=255)

                                                                                                               tgtAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGt                      >  2:90637/1‑140 (MQ=255)

                                                                                                               tgtAACAGGTAAAACCAGAAGTTCC‑TGGTTTGATAT‑GGATGATGAGACTTCAGGCATCCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTa                     >  2:1100016/1‑140 (MQ=255)

                                                                                                                 tAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTaa                    >  2:486271/1‑140 (MQ=255)

                                                                                                                 tAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTaa                    <  2:146069/140‑1 (MQ=255)

                                                                                                                 tAACAGGTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTaa                    <  2:859943/140‑1 (MQ=255)

                                                                                                                       gTAAAACCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATagaga              >  2:1227273/1‑140 (MQ=255)

                                                                                                                         aaaaCCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATagagaga            <  1:422273/140‑1 (MQ=255)

                                                                                                                         aaaaCCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATagagaga            >  1:661881/1‑140 (MQ=255)

                                                                                                                         aaaaCCAGAAGGTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATagagagt            >  2:710009/1‑139 (MQ=255)

                                                                                                                            aCCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGt         <  2:855931/140‑1 (MQ=255)

                                                                                                                            aCCAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGt         <  1:68122/140‑1 (MQ=255)

                                                                                                                              cAGAAGTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAg       <  1:415146/140‑1 (MQ=255)

                                                                                                                                   gTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCg  <  1:935384/140‑1 (MQ=255)

                                                                                                                                   gTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCg  <  1:1262994/140‑1 (MQ=255)

                                                                                                                                   gTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCg  <  1:90637/140‑1 (MQ=255)

                                                                                                                                   gTTCCTGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCg  <  1:1172684/140‑1 (MQ=255)

ATTGTGAACGTCCCGGCGCGTCGAATAATCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATAT‑GGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCG  >  NC_000913/4364955‑4365225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A