Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F48 I1 R1 82 50.4 1709896 99.0% 1692797 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,901,468 A→C I293L (ATC→CTC)  yqcE → putative transport protein YqcE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,901,4680AC98.7% 287.4 / ‑4.1 74I293L (ATC→CTC) yqcEputative transport protein YqcE
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base C (41/32);  total (42/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01

ACCGAAATGTATGGCATGTCGCTGGTGGCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGATCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCGGGCTGTA  >  NC_000913/2901333‑2901604
                                                                                                                                       |                                                                                                                                        
aCCGAAATGTATGGCATGTCGCTGGTGGCGGCGAGCTGCATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCa                                                                                                                                      >  1:401978/1‑140 (MQ=255)
aCCGAAATGTATGGCATGTCGCTGGTGGCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCa                                                                                                                                      >  1:783172/1‑140 (MQ=255)
   gAAATGTATGGCATGTCGCTGGTGGCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAAt                                                                                                                                   <  1:410837/140‑1 (MQ=255)
   gAAATGTATGGCATGTCGCTGGTGGCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAAt                                                                                                                                   >  2:707850/1‑140 (MQ=255)
                 gTCGCTGGTGGCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCg                                                                                                                     <  2:750106/140‑1 (MQ=255)
                   cGCTGGTGGCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGc                                                                                                                   >  2:9813/1‑140 (MQ=255)
                   cGCTGGTGGCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGc                                                                                                                   >  1:382210/1‑140 (MQ=255)
                   cGCTGGTGGCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGc                                                                                                                   <  1:431671/140‑1 (MQ=255)
                   cGCTGGTGGCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGATCCAAATCCTTTCCGTACTCGGc                                                                                                                   >  1:82799/1‑140 (MQ=255)
                      tggtggCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGcttg                                                                                                                <  2:487878/140‑4 (MQ=255)
                      tggtggCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCctg                                                                                                                <  1:543170/140‑1 (MQ=255)
                       ggtggCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCctgc                                                                                                               <  2:430517/140‑1 (MQ=255)
                        gtggCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCctgct                                                                                                              >  2:488843/1‑140 (MQ=255)
                        gtggCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCctgct                                                                                                              <  2:768075/140‑1 (MQ=255)
                           gcggcgAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGAc                                                                                                           <  2:619201/140‑1 (MQ=255)
                            cggcgAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACg                                                                                                          >  1:383147/1‑140 (MQ=255)
                             ggcgAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGt                                                                                                         >  2:267594/1‑140 (MQ=255)
                                gAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTaa                                                                                                      <  1:499076/140‑1 (MQ=255)
                                   cTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTg                                                                                                   >  2:307700/1‑140 (MQ=255)
                                            gATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCg                                                                                          >  2:548940/1‑140 (MQ=255)
                                              ttGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTc                                                                                        >  1:397377/1‑140 (MQ=255)
                                                gtgATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCAc                                                                                      <  2:136689/140‑1 (MQ=255)
                                                gtgATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCAc                                                                                      >  1:662693/1‑140 (MQ=255)
                                                gtgATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCAc                                                                                      >  1:722361/1‑140 (MQ=255)
                                                 tgATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACg                                                                                     >  1:119818/1‑140 (MQ=255)
                                                   aTCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGaa                                                                                   >  2:690129/1‑140 (MQ=255)
                                                       acaaAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAActct                                                                               >  1:518944/1‑140 (MQ=255)
                                                       acaaAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAActct                                                                               <  1:724428/140‑1 (MQ=255)
                                                         aaaaTATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTaa                                                                             >  1:146487/1‑140 (MQ=255)
                                                         aaaaTATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTaa                                                                             >  1:821544/1‑140 (MQ=255)
                                                           aaTATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAAcc                                                                           >  2:236425/1‑140 (MQ=255)
                                                               ttCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCa                                                                       <  1:9813/140‑1 (MQ=255)
                                                                tCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCaa                                                                      >  1:483715/1‑140 (MQ=255)
                                                                  cgcgcgCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATc                                                                    >  1:668117/1‑140 (MQ=255)
                                                                  cgcgcgCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATc                                                                    >  2:610287/1‑140 (MQ=255)
                                                                  cgcgcgCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATc                                                                    >  1:62026/1‑140 (MQ=255)
                                                                       gcTGTGCGACCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTcg                                                               >  2:830053/1‑140 (MQ=255)
                                                                           tgCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGAt                                                           >  2:433397/1‑140 (MQ=255)
                                                                                cccACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGa                                                      >  1:659636/1‑140 (MQ=255)
                                                                                cccACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGa                                                      <  2:383147/140‑1 (MQ=255)
                                                                                    cTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTgg                                                  <  2:62026/140‑1 (MQ=255)
                                                                                     ttGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGc                                                 >  1:208592/1‑140 (MQ=255)
                                                                                              tAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTa                                        >  1:184793/1‑140 (MQ=255)
                                                                                               aaTCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTAc                                       >  1:436941/1‑140 (MQ=255)
                                                                                                  caccacCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTATCCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTActgc                                    <  1:690129/140‑1 (MQ=255)
                                                                                                  caccacCTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTActgc                                    <  2:483715/140‑1 (MQ=255)
                                                                                                       ccTACAGCAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGa                               <  1:267594/140‑1 (MQ=255)
                                                                                                              cAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCAc                          >  1:845848/1‑138 (MQ=255)
                                                                                                              cAAAGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCAc                          <  2:845848/138‑1 (MQ=255)
                                                                                                                 aGTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGtt                     >  1:284717/1‑140 (MQ=255)
                                                                                                                  gTGAAATCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTa                    >  2:10383/1‑140 (MQ=255)
                                                                                                                     aaaTCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGc                 <  1:706711/140‑1 (MQ=255)
                                                                                                                     aaaTCCCCTACCCGCGTGCTCCAAATCCTTGCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGc                 <  1:279127/140‑1 (MQ=255)
                                                                                                                      aaTCCCCTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGcc                >  1:422126/1‑140 (MQ=255)
                                                                                                                           ccTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCAcg           <  2:397377/140‑1 (MQ=255)
                                                                                                                            cTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCAcgc          >  1:698362/1‑140 (MQ=255)
                                                                                                                            cTACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCAcgc          >  1:172272/1‑140 (MQ=255)
                                                                                                                             tACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCGATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCAcgcg         >  2:214872/1‑140 (MQ=255)
                                                                                                                             tACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCAcgcg         >  1:130042/1‑140 (MQ=255)
                                                                                                                             tACCCGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCAcgcg         >  2:747845/1‑140 (MQ=255)
                                                                                                                               cccGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCggg       <  1:707850/140‑1 (MQ=255)
                                                                                                                               cccGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCggg       <  1:727743/140‑1 (MQ=255)
                                                                                                                               cccGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCggg       <  2:662693/140‑1 (MQ=255)
                                                                                                                               cccGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCggg       <  2:722361/140‑1 (MQ=255)
                                                                                                                               cccGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCggg       <  1:236425/140‑1 (MQ=255)
                                                                                                                               cccGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCggg       <  1:307700/140‑1 (MQ=255)
                                                                                                                               cccGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCggg       <  2:208592/140‑1 (MQ=255)
                                                                                                                                ccGCGTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCGGGc      <  1:173784/140‑1 (MQ=255)
                                                                                                                                  gcgTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCGGGc      >  1:721867/1‑138 (MQ=255)
                                                                                                                                  gcgTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCGGGc      <  2:721867/138‑1 (MQ=255)
                                                                                                                                   cgTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCGGGCTGt   >  1:189377/1‑140 (MQ=255)
                                                                                                                                   cgTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCGGGCTGt   >  1:475968/1‑140 (MQ=255)
                                                                                                                                    gTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCACTCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCAcg           <  1:27953/131‑1 (MQ=255)
                                                                                                                                    gTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCAcg           >  2:27953/1‑131 (MQ=255)
                                                                                                                                    gTGCTCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCGGGCTGTa  <  1:610287/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
ACCGAAATGTATGGCATGTCGCTGGTGGCGGCGAGCTACATGGGGATTGTGATCAACAAAATATTCCGCGCGCTGTGCGGCCCACTTGGCGGCATAATCACCACCTACAGCAAAGTGAAATCCCCTACCCGCGTGATCCAAATCCTTTCCGTACTCGGCCTGCTGACGTTAACTGCCCTGCTCGTCACGAACTCTAACCCGCAATCGGTCGCGATGGGGATTGGCCTGATTTTACTGCTGGGATTCACCTGTTACGCCTCACGCGGGCTGTA  >  NC_000913/2901333‑2901604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A