Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F48 I1 R1	62	93.4	3176452	99.2%	3151040	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,121,732	G→T	P6T (CCA→ACA)	hslU ←	ATPase component of the HslVU protease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,121,732	0	G	T	100.0%	262.4 / NA	74	P6T (CCA→ACA)	hslU	ATPase component of the HslVU protease
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (28/46); total (28/46)

TCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAG  >  NC_000913/4121597‑4121866

tCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTc                                                                                                                                    <  2:330924/140‑1 (MQ=255)

  ggggTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCAt                                                                                                                                  >  2:875114/1‑140 (MQ=255)

   gggTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCAtt                                                                                                                                 <  2:208243/140‑1 (MQ=255)

    ggTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCAttt                                                                                                                                >  2:102906/1‑140 (MQ=255)

      tCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCa                                                                                                                              <  1:568671/140‑1 (MQ=255)

      tCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCa                                                                                                                              <  1:1453090/140‑1 (MQ=255)

      tCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCa                                                                                                                              <  1:289178/140‑1 (MQ=255)

        aCTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGa                                                                                                                            >  2:1099936/1‑140 (MQ=255)

        aCTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGa                                                                                                                            <  2:1269725/140‑1 (MQ=255)

         cTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGAc                                                                                                                           <  1:482376/140‑1 (MQ=255)

               ggCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGga                                                                                                                     <  2:1356807/140‑1 (MQ=255)

               ggCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGga                                                                                                                     <  1:360872/140‑1 (MQ=255)

               ggCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGga                                                                                                                     <  2:345571/140‑1 (MQ=255)

               ggCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGga                                                                                                                     <  2:771879/140‑1 (MQ=255)

               ggCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGga                                                                                                                     <  2:50197/140‑1 (MQ=255)

                 cgcAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGgaga                                                                                                                   <  1:875114/140‑1 (MQ=255)

                   cAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATc                                                                                                                 >  2:23559/1‑140 (MQ=255)

                    aGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACa                                                                                                                          <  1:562784/130‑1 (MQ=255)

                    aGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACa                                                                                                                          >  2:562784/1‑130 (MQ=255)

                    aGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATcc                                                                                                                >  1:54129/1‑140 (MQ=255)

                    aGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATcc                                                                                                                >  2:717909/1‑140 (MQ=255)

                    aGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATcc                                                                                                                >  2:1150625/1‑140 (MQ=255)

                    aGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATcc                                                                                                                >  1:1498217/1‑140 (MQ=255)

                    aGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATcc                                                                                                                >  1:249759/1‑140 (MQ=255)

                      ctctTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCtt                                                                                                              >  1:700828/1‑140 (MQ=255)

                      ctctTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCtt                                                                                                              >  2:491735/1‑140 (MQ=255)

                           cGTTGAGTTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCt                                                                                                         >  2:102354/1‑140 (MQ=255)

                           cGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCt                                                                                                         >  2:1313750/1‑140 (MQ=255)

                           cGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCt                                                                                                         >  1:696669/1‑140 (MQ=255)

                            gTTGAGCGGCATGCGACGCCAGCGGTTACGCAGAGAAATCGCCATAGAACGCTTGGCGGTGTCCTGGACGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCtt                                                                                                        <  2:1298232/140‑1 (MQ=255)

                              tGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTg                                                                                                      <  2:628753/140‑1 (MQ=255)

                              tGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTg                                                                                                      <  1:1025092/140‑1 (MQ=255)

                              tGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTg                                                                                                      <  1:1099936/140‑1 (MQ=255)

                              tGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTg                                                                                                      <  1:1068853/140‑1 (MQ=255)

                                aGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTa                                                                                                    >  2:383205/1‑140 (MQ=255)

                                aGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTa                                                                                                    >  1:228024/1‑140 (MQ=255)

                                    gCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCtt                                                                                                <  2:83501/140‑1 (MQ=255)

                                    gCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCtt                                                                                                <  2:228024/140‑1 (MQ=255)

                                     cATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTa                                                                                               <  2:1344721/140‑1 (MQ=255)

                                              ccAGCGGTTACGCAGAGCAATCGCCACAGAGCGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTACAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGa                                                                                      <  2:1079493/140‑1 (MQ=255)

                                               cAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGAt                                                                                     >  2:729915/1‑140 (MQ=255)

                                               cAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGAt                                                                                     <  1:1552182/140‑1 (MQ=255)

                                                       aCGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGa                                                                             <  2:1105184/140‑1 (MQ=255)

                                                        cGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGaa                                                                            <  2:195838/140‑1 (MQ=255)

                                                        cGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGaa                                                                            <  2:11332/140‑1 (MQ=255)

                                                        cGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGaa                                                                            <  1:383205/140‑1 (MQ=255)

                                                        agCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGaa                                                                            <  2:626621/139‑1 (MQ=255)

                                                         gCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGaaa                                                                           <  2:1498217/140‑1 (MQ=255)

                                                             agCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAAtggt                                                                       <  2:1119190/140‑1 (MQ=255)

                                                             agCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAAtggt                                                                       <  2:700828/140‑1 (MQ=255)

                                                             agCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAAtggt                                                                       <  1:19288/140‑1 (MQ=255)

                                                             agCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAAtggt                                                                       <  2:1312007/140‑1 (MQ=255)

                                                             agCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAAtggt                                                                       >  2:719727/1‑140 (MQ=255)

                                                             agCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAAtggt                                                                       <  1:1397782/140‑1 (MQ=255)

                                                              gCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGaa                                                                            <  1:797812/134‑1 (MQ=255)

                                                              gCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGaa                                                                            >  2:797812/1‑134 (MQ=255)

                                                                    gCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGtata                                                                <  2:249759/140‑1 (MQ=255)

                                                                         aGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGc                                                           >  2:455443/1‑140 (MQ=255)

                                                                             cGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAAt                                                       >  2:767107/1‑140 (MQ=255)

                                                                               cTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGt                                                     <  1:491735/140‑1 (MQ=255)

                                                                                     gTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTg                                               >  1:920729/1‑140 (MQ=255)

                                                                                              gCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGGGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCa                                      >  2:444918/1‑140 (MQ=255)

                                                                                                               ccAGTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAAtt                     >  1:360310/1‑140 (MQ=255)

                                                                                                                  gTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCa                  >  1:7799/1‑140 (MQ=255)

                                                                                                                  gTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCa                  >  2:706091/1‑140 (MQ=255)

                                                                                                                  gTTCGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCa                  >  1:407217/1‑140 (MQ=255)

                                                                                                                     cGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACgg               <  2:54129/140‑1 (MQ=255)

                                                                                                                     cGCTGACGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACgg               <  1:1150625/140‑1 (MQ=255)

                                                                                                                          aCGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCt          <  1:1400179/140‑1 (MQ=255)

                                                                                                                          aCGATTTCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCt          <  1:717909/140‑1 (MQ=255)

                                                                                                                               ttCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGtt     <  1:102354/140‑1 (MQ=255)

                                                                                                                                tCGCGTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTc    <  1:23559/140‑1 (MQ=255)

                                                                                                                                  gcgTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAg  <  2:696669/140‑1 (MQ=255)

                                                                                                                                  gcgTGTGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAg  <  1:1313750/140‑1 (MQ=255)

TCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGATGGTGTGGAAATGGTTGGTATAGATGCAAATGTCGCCTGCAATATCCAACGCCTTTTCAGCAATTTCACGGGCGCTAAGTTCAG  >  NC_000913/4121597‑4121866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A