Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F48 I1 R1	62	93.4	3176452	99.2%	3151040	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,125,587	G→T	I408I (ATC→ATA)	priA ←	primosome factor N'

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,125,587	0	G	T	100.0%	188.3 / NA	56	I408I (ATC→ATA)	priA	primosome factor N'
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (29/27); total (29/27)

AGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACG  >  NC_000913/4125457‑4125713

agtagtGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGcc                                                                                                                       >  1:635547/1‑140 (MQ=255)

agtagtGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGcc                                                                                                                       >  1:1513513/1‑140 (MQ=255)

 gtagtGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCg                                                                                                                      <  2:340303/140‑1 (MQ=255)

      gATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGcc                                                                                                                 >  2:132510/1‑140 (MQ=255)

       aTCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTTGTTATCAGCCTGTAAATGCTGGCGCTTACGAGTTATTAACGCCGGAGCCa                                                                                                                >  2:1304794/1‑140 (MQ=255)

       aTCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCa                                                                                                                >  2:242572/1‑140 (MQ=255)

         cGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGa                                                                                                              <  1:242572/140‑1 (MQ=255)

         cGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGa                                                                                                              <  1:132510/140‑1 (MQ=255)

          acAACGTGGGCATTCGGCAAACCAGCCACGGGCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGTTTAAGAAGGAGAATGACCTGGTTATCAGCCTGTAAATGTGGGCGCATACGAGTTATTAACGCCGGAGCCAGAc                                                                                                             <  2:1380003/139‑1 (MQ=255)

                  ggCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACctgcctgc                                                                                                     <  2:885331/140‑1 (MQ=255)

                      ttCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCt                                                                                                 >  1:1503092/1‑140 (MQ=255)

                         ggCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGTCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCt                                                                                              <  1:1380736/140‑1 (MQ=255)

                         ggCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCt                                                                                              >  1:750798/1‑140 (MQ=255)

                                cAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCttt                                                                                       >  1:891220/1‑140 (MQ=255)

                                   ccACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTaa                                                                                    >  1:179897/1‑140 (MQ=255)

                                    cacaGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTaaa                                                                                   <  2:1513513/140‑1 (MQ=255)

                                      caGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATc                                                                                 <  2:875878/140‑1 (MQ=255)

                                         tCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAg                                                                              <  2:750798/140‑1 (MQ=255)

                                           gTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGca                                                                            <  2:820019/140‑1 (MQ=255)

                                                  agcagTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTg                                                                     >  1:424862/1‑140 (MQ=255)

                                                   gcagTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTTTCAGCCCGTAAATGCTGGCGCATACGAGTTTTTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACTAGTTGa                                                                    >  2:974746/1‑140 (MQ=255)

                                                   gcagTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGa                                                                    >  2:1212973/1‑140 (MQ=255)

                                                   gcagTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGa                                                                    >  1:1213272/1‑140 (MQ=255)

                                                       tGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTg                                                                >  2:1393986/1‑140 (MQ=255)

                                                         cAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGGGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGcc                                                              >  1:997123/1‑140 (MQ=255)

                                                         cAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGcc                                                              >  1:1142053/1‑140 (MQ=255)

                                                              gcAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGAcg                                                         >  2:1046044/1‑140 (MQ=255)

                                                              gcAAAGCCACGGCGGGTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAAAGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGAcg                                                         >  2:1367282/1‑140 (MQ=255)

                                                                 aaGCCACGGCGGGTAAGAAAGAGAATGACCTGGATATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAAAGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACgcgc                                                      >  1:1268589/1‑140 (MQ=255)

                                                                    ccACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCAtt                                                   <  2:1527062/140‑1 (MQ=255)

                                                                    ccACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCAtt                                                   <  1:457715/140‑1 (MQ=255)

                                                                      aCGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTcc                                                 <  2:997123/140‑1 (MQ=255)

                                                                      aCGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTcc                                                 >  1:233078/1‑140 (MQ=255)

                                                                      aCGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTcc                                                 <  2:1142053/140‑1 (MQ=255)

                                                                       cggcggTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTccc                                                >  2:551084/1‑140 (MQ=255)

                                                                        ggcggTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCt                                               >  2:1535730/1‑140 (MQ=255)

                                                                              tAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGa                                         <  1:1290724/140‑1 (MQ=255)

                                                                              tAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGa                                         <  1:624455/140‑1 (MQ=255)

                                                                               aagaaagaGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGAc                                        <  2:891220/140‑1 (MQ=255)

                                                                               aagaaagaGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGAc                                        <  2:948892/140‑1 (MQ=255)

                                                                                  aaagaGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACggg                                     <  1:653671/140‑1 (MQ=255)

                                                                                    agagAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTc                                   <  2:1503092/140‑1 (MQ=255)

                                                                                         aTGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGgcg                              <  2:1213272/140‑1 (MQ=255)

                                                                                            aCCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCgcag                           <  2:179897/140‑1 (MQ=255)

                                                                                             ccTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCgcagc                          <  2:1039309/140‑1 (MQ=255)

                                                                                                  ttATCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCg                     >  2:1412049/1‑140 (MQ=255)

                                                                                                    aTCAGCCTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTCCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGt                   >  1:18733/1‑140 (MQ=255)

                                                                                                         ccTGTAAATGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTAtttt              <  1:551084/140‑1 (MQ=255)

                                                                                                                aTGCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTctgct       <  1:1212973/140‑1 (MQ=255)

                                                                                                                  gCTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTgg     >  1:1040481/1‑140 (MQ=255)

                                                                                                                   cTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGa    >  2:680637/1‑140 (MQ=255)

                                                                                                                   cTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGa    >  1:25639/1‑140 (MQ=255)

                                                                                                                   cTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGa    >  2:1203057/1‑140 (MQ=255)

                                                                                                                   cTGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGa    >  2:1282828/1‑140 (MQ=255)

                                                                                                                    tGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGAc   <  1:1367282/140‑1 (MQ=255)

                                                                                                                    tGGCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGAc   <  2:616426/140‑1 (MQ=255)

                                                                                                                     ggCGCATACGAGTTATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTTCTGGACg  >  1:369860/1‑140 (MQ=255)

AGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACG  >  NC_000913/4125457‑4125713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A