Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F48 I1 R1	70	151.6	5072932	98.7%	5006983	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,929,273	G→A	R111* (CGA→TGA)	viaA ←	protein ViaA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,929,273	0	G	A	100.0%	544.7 / NA	150	R111* (CGA→TGA)	viaA	protein ViaA
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (71/79); total (71/79)

Only 100 of 150 total aligned reads displayed.

AACAGTTGTTCGCGTTCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGC  >  NC_000913/3929137‑3929403

aaCAGTTGTTCGCGTTCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGc                                                                                                                                 <  2:493748/140‑1 (MQ=255)

aaCAGTTGTTCGCGTTCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGc                                                                                                                                 >  1:623711/1‑140 (MQ=255)

     ttgttCGCGTTCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGtt                                                                                                                            >  1:1854362/1‑140 (MQ=255)

     ttgttCGCGTTCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGCGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGtt                                                                                                                            >  1:2066009/1‑140 (MQ=255)

      tgttCGCGTTCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTc                                                                                                                           <  1:2029079/140‑1 (MQ=255)

        ttCGCGTTCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTg                                                                                                                         >  2:918874/1‑140 (MQ=255)

          cgcgTTCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGcc                                                                                                                       >  1:1071642/1‑140 (MQ=255)

          cgcgTTCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGcc                                                                                                                       >  2:2245269/1‑140 (MQ=255)

          cgcgTTCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGcc                                                                                                                       >  1:97709/1‑140 (MQ=255)

          cgcgTTCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGcc                                                                                                                       >  1:427829/1‑140 (MQ=255)

          cgcgTTCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGcc                                                                                                                       >  1:1092280/1‑140 (MQ=255)

                 ttcttctAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGgag                                                                                                                >  1:1661239/1‑140 (MQ=255)

                    ttctAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAAt                                                                                                             <  2:670798/140‑1 (MQ=255)

                         aTAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGa                                                                                                        <  1:1059823/140‑1 (MQ=255)

                         aTAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGa                                                                                                        >  1:439912/1‑140 (MQ=255)

                         aTAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGa                                                                                                        <  1:299881/140‑1 (MQ=255)

                         aTAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGa                                                                                                        >  2:233275/1‑140 (MQ=255)

                         aTAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGa                                                                                                        >  2:1143996/1‑140 (MQ=255)

                         aTAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGa                                                                                                        >  1:2258446/1‑140 (MQ=255)

                         aTAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGa                                                                                                        >  2:1760387/1‑140 (MQ=255)

                          tAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGAc                                                                                                       <  1:1510838/140‑1 (MQ=255)

                          tAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGAc                                                                                                       <  1:608435/140‑1 (MQ=255)

                             cTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGAt                                                                                                    >  1:1433008/1‑140 (MQ=255)

                             cTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGAt                                                                                                    >  1:1959617/1‑140 (MQ=255)

                             cTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGAt                                                                                                    >  1:2352293/1‑140 (MQ=255)

                             cTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGAt                                                                                                    >  1:2258471/1‑140 (MQ=255)

                             atGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGAt                                                                                                    <  2:2029326/139‑1 (MQ=255)

                                ttGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGTTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCa                                                                                                 >  2:1892753/1‑140 (MQ=255)

                                ttGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCa                                                                                                 >  2:1574523/1‑140 (MQ=255)

                                ttGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCa                                                                                                 >  2:137605/1‑140 (MQ=255)

                                ttGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCa                                                                                                 >  1:374705/1‑140 (MQ=255)

                                 tGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAg                                                                                                <  2:2043918/140‑1 (MQ=255)

                                 tGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAg                                                                                                >  2:2268497/1‑140 (MQ=255)

                                 tGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAg                                                                                                <  2:1857651/140‑1 (MQ=255)

                                  gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGTTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGt                                                                                               <  1:1892753/140‑1 (MQ=255)

                                  gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGt                                                                                               <  2:1682537/140‑1 (MQ=255)

                                  gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGt                                                                                               <  2:1661239/140‑1 (MQ=255)

                                  gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGt                                                                                               <  2:1967366/140‑1 (MQ=255)

                                  gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGt                                                                                               <  1:859355/140‑1 (MQ=255)

                                  gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGt                                                                                               <  2:2029708/140‑1 (MQ=255)

                                  gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGt                                                                                               <  2:2531410/140‑1 (MQ=255)

                                  gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGt                                                                                               <  2:891853/140‑1 (MQ=255)

                                  gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGt                                                                                               <  2:1278074/140‑1 (MQ=255)

                                  gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGt                                                                                               <  1:2174823/140‑1 (MQ=255)

                                    tttAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTaa                                                                                             <  1:23783/140‑1 (MQ=255)

                                       aaCGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTc                                                                                          <  2:1413427/140‑1 (MQ=255)

                                       aaCGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTc                                                                                          >  1:1556010/1‑140 (MQ=255)

                                       aaCGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTc                                                                                          >  2:373795/1‑140 (MQ=255)

                                       aaCGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTc                                                                                          >  2:262887/1‑140 (MQ=255)

                                        aCGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTcc                                                                                         <  1:1411561/140‑1 (MQ=255)

                                            cgtTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGa                                                                                     <  2:407964/140‑1 (MQ=255)

                                            cgtTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGa                                                                                     <  2:2093550/140‑1 (MQ=255)

                                            cgtTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGa                                                                                     <  1:270404/140‑1 (MQ=255)

                                             gtTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTa                                                                                              <  2:796956/130‑1 (MQ=255)

                                             gtTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTa                                                                                              >  1:796956/1‑130 (MQ=255)

                                              ttgcttgcACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATc                                                                                   >  1:768579/1‑140 (MQ=255)

                                                 cttgcACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCtgt                                                                                <  2:1556010/140‑1 (MQ=255)

                                                    gcACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGt                                                                             <  1:911471/140‑1 (MQ=255)

                                                      aCGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAg                                                                           <  1:992091/140‑1 (MQ=255)

                                                        gATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCt                                                                         <  2:1092280/140‑1 (MQ=255)

                                                        gATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCt                                                                         <  2:1817103/140‑1 (MQ=255)

                                                         aTCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTg                                                                        <  2:97709/140‑1 (MQ=255)

                                                         aTCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTg                                                                        >  1:2129108/1‑140 (MQ=255)

                                                          tCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGc                                                                       >  2:2128432/1‑140 (MQ=255)

                                                          tCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGc                                                                       <  2:323341/140‑1 (MQ=255)

                                                          tCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGc                                                                       >  2:2516305/1‑140 (MQ=255)

                                                                  aaaCGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATaaa                                                               >  1:39401/1‑140 (MQ=255)

                                                                  aaaCGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATaaa                                                               >  2:1243673/1‑140 (MQ=255)

                                                                   aaCGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAAc                                                              >  1:1931688/1‑140 (MQ=255)

                                                                    aCGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACt                                                             >  2:1399782/1‑140 (MQ=255)

                                                                       ccAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACtgtg                                                          <  1:2128432/140‑1 (MQ=255)

                                                                       ccAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACtgtg                                                          <  2:2249945/140‑1 (MQ=255)

                                                                        cAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTgg                                                         >  1:2046374/1‑140 (MQ=255)

                                                                          aCGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCg                                                       <  1:2272352/140‑1 (MQ=255)

                                                                          aCGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCg                                                       <  1:1574523/140‑1 (MQ=255)

                                                                               ggAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGgag                                                  <  1:2516305/140‑1 (MQ=255)

                                                                                      aaGCGTGTGTAACGCTGAAGTGATCGTGCGGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCt                                           >  1:2243755/1‑140 (MQ=255)

                                                                                         cGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGc                                        <  2:2258471/140‑1 (MQ=255)

                                                                                          gtgtgtAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCt                                       >  1:2484118/1‑140 (MQ=255)

                                                                                          gtgtgtAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCt                                       >  1:1847248/1‑140 (MQ=255)

                                                                                          gtgtgtAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCt                                       >  1:1571935/1‑140 (MQ=255)

                                                                                          gtgtgtAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCt                                       >  1:2332517/1‑140 (MQ=255)

                                                                                           tgtgtAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCtt                                      <  1:1915830/140‑1 (MQ=255)

                                                                                            gtgtAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCttt                                     <  2:439912/140‑1 (MQ=255)

                                                                                                 aCGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGCAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGa                                <  2:1972444/140‑1 (MQ=255)

                                                                                                  cGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGAt                               <  2:623711/140‑1 (MQ=255)

                                                                                                         gTGATCGTGCTGTTAGCATCGACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACAt                        <  1:1760387/140‑1 (MQ=255)

                                                                                                         gTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACAt                        <  1:1143996/140‑1 (MQ=255)

                                                                                                         gTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACAt                        <  2:2104415/140‑1 (MQ=255)

                                                                                                         gTGATCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACAt                        >  1:371395/1‑140 (MQ=255)

                                                                                                            aTCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCAc                     >  2:2459900/1‑140 (MQ=255)

                                                                                                            aTCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCAc                     <  2:405147/140‑1 (MQ=255)

                                                                                                            aTCGTGCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCAc                     <  1:1771527/140‑1 (MQ=255)

                                                                                                                 gCTGTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCtt                >  1:260789/1‑140 (MQ=255)

                                                                                                                    gTTAGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCgg             >  2:1604487/1‑140 (MQ=255)

                                                                                                                       aGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGa          >  2:1280513/1‑140 (MQ=255)

                                                                                                                       aGCATCAACCAACTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGa          >  1:1656374/1‑140 (MQ=255)

                                                                                                                             aaccaacTGTCAGGCTTGTTCTGCCC‑‑GGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCcggc  >  2:226036/1‑140 (MQ=255)

                                                                                                                               ccaacTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCcggc  >  1:1980415/1‑140 (MQ=255)

                                                                                                                               ccaacTGTCAGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCcggc  <  2:1847248/140‑1 (MQ=255)

AACAGTTGTTCGCGTTCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGC  >  NC_000913/3929137‑3929403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A