Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	161	50.8	1735388	98.6%	1711092	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,059,758	A→G	N168S (AAC→AGC)	torA →	trimethylamine N‑oxide reductase 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,059,758	0	A	G	100.0%	222.5 / NA	63	N168S (AAC→AGC)	torA	trimethylamine N‑oxide reductase 1
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (30/33); total (30/33)

GATAACCGTTTTGTGCGCGTGAGCTGGGATGAAGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAACGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCCGCGCGTAGTCGGTTCGATGGAAGTGTATGAACAGCA  >  NC_000913/1059622‑1059890

gATAACCGTTTTGTGCGCGTGAGCTGGGATGAAGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAgcgc                                                                                                                                   <  1:441605/140‑1 (MQ=255)

gATAACCGTTTTGTGCGCGTGAGCTGGGATGAAGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAgcgc                                                                                                                                   <  1:326774/140‑1 (MQ=255)

     ccGTTTTGTGCGCGTGAGCTGGGATGAAGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCgg                                                                                                                              <  2:799908/140‑1 (MQ=255)

       gTTTTGTGCGCGTGAGCTGGGATGAAGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGTAATCGACGGGGATGTTCCATAGCGCTTCgggg                                                                                                                            <  1:863806/140‑1 (MQ=255)

         tttGTGCGCGTGAGCTGGGATGAAGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGAt                                                                                                                          >  2:77701/1‑140 (MQ=255)

         tttGTGCGCGTGAGCTGGGATGAAGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGAt                                                                                                                          >  1:838275/1‑140 (MQ=255)

         tttGTGCGCGTGAGCTGGGATGAAGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGAt                                                                                                                          >  2:429004/1‑140 (MQ=255)

           tgtgCGCGTGAGCTGGGATGAAGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGc                                                                                                                        >  1:471171/1‑140 (MQ=255)

                       cTGGGATGAAGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTa                                                                                                            <  1:291179/140‑1 (MQ=255)

                         gggATGAAGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTAtt                                                                                                          <  1:77701/140‑1 (MQ=255)

                           gATGAAGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGc                                                                                                        >  2:84627/1‑140 (MQ=255)

                            aTGAAGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGcc                                                                                                       <  1:84627/140‑1 (MQ=255)

                               aaGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTg                                                                                                    <  1:242529/140‑1 (MQ=255)

                                aGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGcc                                                                                                       >  2:584418/1‑136 (MQ=255)

                                aGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGcc                                                                                                       <  1:584418/136‑1 (MQ=255)

                                aGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGc                                                                                                   >  1:643804/1‑140 (MQ=255)

                                 gCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCa                                                                                                  <  2:747939/140‑1 (MQ=255)

                                 gCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCa                                                                                                  <  2:756952/140‑1 (MQ=255)

                                 gCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCa                                                                                                  >  1:21461/1‑140 (MQ=255)

                                    cTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTa                                                                                                            <  2:121974/127‑1 (MQ=255)

                                    cTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTa                                                                                                            >  1:121974/1‑127 (MQ=255)

                                        aCATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAAt                                                                                           <  1:597230/140‑1 (MQ=255)

                                            gTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCg                                                                                       >  2:776423/1‑140 (MQ=255)

                                             ttCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGACGAAAGCTATTG‑CTTGCATGGTaa                                                                                            <  1:3210/133‑1 (MQ=255)

                                             ttCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGACGAAAGCTATTG‑CTTGCATGGTaa                                                                                            >  2:3210/1‑133 (MQ=255)

                                             ttCTATGAAGAACTGGAACGCGGGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGt                                                                                      <  2:510435/140‑1 (MQ=255)

                                                       aaCTGGAACGCGTGCAGAAAACTCATGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACgg                                                                              <  1:429041/138‑1 (MQ=255)

                                                       aaCTGGAACGCGTGCAGAAAACTCATGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACgg                                                                              >  2:429041/1‑138 (MQ=255)

                                                       aaCTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTa                                                                                 >  1:327529/1‑135 (MQ=255)

                                                       aaCTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTa                                                                                 <  2:327529/135‑1 (MQ=255)

                                                       aaCTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGc                                                                            >  1:52267/1‑140 (MQ=255)

                                                       aaCTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGc                                                                            >  1:265938/1‑140 (MQ=255)

                                                       aaCTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGc                                                                            <  2:52267/140‑1 (MQ=255)

                                                       aaCTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGc                                                                            >  2:496700/1‑140 (MQ=255)

                                                       aaCTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGc                                                                            >  2:263729/1‑140 (MQ=255)

                                                       aaCTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGc                                                                            >  1:150531/1‑140 (MQ=255)

                                                         cTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCgg                                                                          >  2:398266/1‑140 (MQ=255)

                                                         cTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCgg                                                                          >  2:384872/1‑140 (MQ=255)

                                                              aCGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGAtt                                                                     >  2:651699/1‑140 (MQ=255)

                                                                gcgTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTAc                                                                   <  1:429004/140‑1 (MQ=255)

                                                                 cgTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTAct                                                                  >  1:768114/1‑140 (MQ=255)

                                                                   tGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTActct                                                                >  2:356080/1‑140 (MQ=255)

                                                                     cAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTAc                                                              <  1:496700/140‑1 (MQ=255)

                                                                          aaCTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGtg                                                         <  1:269423/140‑1 (MQ=255)

                                                                             tCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGTGGAGATTACTCTACCGGtgctg                                                      <  2:493249/140‑1 (MQ=255)

                                                                              cACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGtgctgc                                                     <  1:776423/140‑1 (MQ=255)

                                                                               aCGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTgcg                                                    >  1:395385/1‑140 (MQ=255)

                                                                                cGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGtg                                                         >  2:769663/1‑134 (MQ=255)

                                                                                cGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGtg                                                         <  1:769663/134‑1 (MQ=255)

                                                                                   gCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAgg                                                <  2:643804/140‑1 (MQ=255)

                                                                                    ccGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGt                                               >  2:102367/1‑140 (MQ=255)

                                                                                              tGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCcg                                     >  2:2119/1‑140 (MQ=255)

                                                                                                cTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCcgcg                                   <  2:150531/140‑1 (MQ=255)

                                                                                                 tGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCcgcgc                                  <  1:356080/140‑1 (MQ=255)

                                                                                                      gCCAGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCCGCGCGTAGt                             <  1:651699/140‑1 (MQ=255)

                                                                                                         aGTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCCGCGCGTAGTCgg                          <  1:2119/140‑1 (MQ=255)

                                                                                                          gTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCCGCGCGTAGTCGGt                         >  2:260962/1‑140 (MQ=255)

                                                                                                          gTGGTTGGCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTACCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCCGCGCGTAGTCGGt                         >  2:851778/1‑140 (MQ=255)

                                                                                                                 gCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCCGCGCGTAGTCGGTTCGATgg                  <  2:21461/140‑1 (MQ=255)

                                                                                                                 gCAATCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCCGCGCGTAGTCGGTTCGATgg                  <  1:556957/140‑1 (MQ=255)

                                                                                                                   aaTCGACGGGGATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCCGCGCGTAGTCGGTTCGATGGaa                <  2:395385/140‑1 (MQ=255)

                                                                                                                          ggggATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCCGCGCGTAGTCGGTTCGATGGAAGTGTATg         <  2:838275/140‑1 (MQ=255)

                                                                                                                            ggATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCCGCGCGTAGTCGGTTCGATGGAAGTGTATGaa       <  1:384872/140‑1 (MQ=255)

                                                                                                                            ggATGTTCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCCGCGCGTAGTCGGTTCGATGGAAGTGTATGaa       <  1:398266/140‑1 (MQ=255)

                                                                                                                                 ttCCATAGCGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCCGCGCGTAGTCGGTTCGATGGAAGTGTATGAACAGCa  >  1:119868/1‑140 (MQ=255)

GATAACCGTTTTGTGCGCGTGAGCTGGGATGAAGCCCTCGACATGTTCTATGAAGAACTGGAACGCGTGCAGAAAACTCACGGGCCGAGTGCCTTGCTGACCGCCAGTGGTTGGCAATCGACGGGGATGTTCCATAACGCTTCGGGGATGCTGGCGAAAGCTATTGCCTTGCATGGTAATAGCGTTGGTACGGGCGGAGATTACTCTACCGGTGCTGCGCAGGTGATCCTGCCGCGCGTAGTCGGTTCGATGGAAGTGTATGAACAGCA  >  NC_000913/1059622‑1059890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A