mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 15,094 | C→T | G309G (GGC→GGT) | dnaJ → | chaperone protein DnaJ |
| RA | 40,223 | A→G | L55P (CTG→CCG) | caiA ← | crotonobetainyl‑CoA reductase |
| RA | 40,677 | T→C | T419A (ACC→GCC) | caiT ← | L‑carnitine:gamma‑butyrobetaine antiporter |
| RA | 77,267 | G→T | I11I (ATC→ATA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 92,843 | A→G | P477P (CCA→CCG) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 131,055 | A→G | V69A (GTC→GCC) | yacH ← | DUF3300 domain‑containing protein YacH |
| RA | 161,232 | A→G | A85A (GCT→GCC) | sfsA ← | putative DNA‑binding transcriptional regulator of maltose metabolism |
| RA | 255,174 | (C)6→7 | coding (543/1458 nt) | pepD ← | peptidase D |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 271,774 | A→G | pseudogene (11/427 nt) | insN → | CP4‑6 prophage; IS911A regulator fragment |
| RA | 282,445 | C→T | L56L (CTC→CTT) | yagE → | CP4‑6 prophage; putative 2‑keto‑3‑deoxygluconate aldolase |
| RA | 377,726 | C→T | V215I (GTT→ATT) | frmB ← | S‑formylglutathione hydrolase FrmB |
| RA | 380,022 | (G)10→11 | intergenic (‑141/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| RA | 399,700 | Δ1 bp | coding (108/213 nt) | yaiZ → | DUF2754 domain‑containing protein YaiZ |
| RA | 445,979 | A→G | S230P (TCG→CCG) | yajR ← | putative major facilitator superfamily transport protein YajR |
| RA | 498,514 | C→T | P154S (CCG→TCG) | hemH → | ferrochelatase |
| RA | 504,214 | A→G | S161S (AGT→AGC) | fsr ← | fosmidomycin efflux pump |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 548,612 | (G)5→6 | coding (256/1260 nt) | ylbE → | DUF1116 domain‑containing protein YlbE |
| RA | 614,720 | A→G | E188E (GAA→GAG) | entF → | apo‑serine activating enzyme |
| RA | 676,210 | (G)5→4 | coding (338/978 nt) | ybeQ ← | Sel1 repeat‑containing protein YbeQ |
| RA | 695,876 | A→G | Y259C (TAC→TGC) | ubiF → | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase |
| RA | 867,048 | +G | coding (481/966 nt) | iaaA → | isoaspartyl dipeptidase proenzyme |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 915,225 | (C)5→4 | intergenic (‑368/+127) | lysO ← / ← aqpZ | L‑lysine exporter/water channel AqpZ |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 979,025 | A→G | E900E (GAA→GAG) | mukB → | chromosome partitioning protein MukB |
| RA | 1,001,379 | A→G | T722A (ACC→GCC) | elfC → | putative fimbrial usher protein ElfC |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,024,413 | C→T | intergenic (‑65/‑58) | yccF ← / → helD | conserved inner membrane protein YccF/DNA helicase IV |
| RA | 1,047,286 | C→T | L220L (CTG→CTA) | gfcD ← | putative lipoprotein GfcD |
| RA | 1,055,516 | C→T | G221G (GGG→GGA) | torS ← | sensory histidine kinase TorS |
| RA | 1,059,758 | A→G | N168S (AAC→AGC) | torA → | trimethylamine N‑oxide reductase 1 |
| RA | 1,062,267 | (A)6→7 | coding (469/600 nt) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| RA | 1,098,278 | A→G | E131E (GAA→GAG) | ghrA → | glyoxylate/hydroxypyruvate reductase A |
| RA | 1,110,359 | A→G | E342G (GAG→GGG) | opgG → | osmoregulated periplasmic glucans (OPGs) biosynthesis protein G |
| RA | 1,112,805 | A→G | D648G (GAC→GGC) | opgH → | osmoregulated periplasmic glucans (OPGs) biosynthesis protein H |
| RA | 1,129,255 | A→G | T473A (ACC→GCC) | murJ → | putative lipid II flippase MurJ |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,195,548 | A→G | K142K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,277 | C→T | N385N (AAC→AAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,280 | G→C | A386A (GCG→GCC) | icd → | isocitrate dehydrogenase |
| RA | 1,196,283 | A→G | K387K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,212,088 | (C)8→9 | intergenic (‑85/+172) | iraM ← / ← ymgK | anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis/protein YmgK |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,226,987 | T→C | intergenic (+19/+84) | ycgJ → / ← pliG | PF05666 family protein YcgJ/inhibitor of g‑type lysozyme |
| RA | 1,288,004 | T→C | E207E (GAA→GAG) | purU ← | formyltetrahydrofolate deformylase |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,358,625 | A→G | V188A (GTT→GCT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,450,841 | G→A | A170V (GCG→GTG) | tynA ← | copper‑containing amine oxidase |
| RA | 1,539,241 | A→G | V1117A (GTC→GCC) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,634,642 | C→T | G82S (GGC→AGC) | tfaQ ← | Qin prophage; putative tail fiber assembly protein TfaQ |
| RA | 1,653,548 | A→G | V123A (GTT→GCT) | rspB ← | putative zinc‑binding dehydrogenase RspB |
| RA | 1,673,621 | C→T | intergenic (‑120/‑292) | mdtJ ← / → tqsA | multidrug/spermidine efflux pump membrane subunit MdtJ/autoinducer 2 exporter |
| RA | 1,684,373 | T→C | F39L (TTC→CTC) | tus → | DNA replication terminus site‑binding protein |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,701,278 | T→C | S108P (TCT→CCT) | malY → | negative regulator of MalT activity/cystathionine beta‑lyase |
| RA | 1,817,080 | T→C | N19S (AAC→AGC) | chbG ← | chitin disaccharide deacetylase |
| RA | 1,831,209 | G→A | F258F (TTC→TTT) | astC ← | succinylornithine transaminase |
| RA | 1,841,780 | A→G | E97E (GAA→GAG) | nudG → | 5‑hydroxy‑CTP diphosphatase |
| RA | 1,869,433 | T→C | V160A (GTT→GCT) | yeaH → | DUF444 domain‑containing protein YeaH |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,917,976 | T→C | L156P (CTG→CCG) | yebT → | intermembrane transport protein YebT |
| RA | 1,941,225 | T→C | Q137Q (CAA→CAG) | mepM ← | peptidoglycan DD‑endopeptidase MepM |
| RA | 1,945,088 | A→G | V90A (GTG→GCG) | ruvB ← | Holliday junction branch migration complex subunit RuvB |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 1,987,451 | G→A | intergenic (+23/+56) | ftnB → / ← yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ |
| RA | 1,987,851 | (A)7→6 | intergenic (‑93/+22) | yecJ ← / ← azuC | DUF2766 domain‑containing protein YecJ/uncharacterized protein AzuC |
| RA | 2,065,685 | A→G | V27A (GTT→GCT) | cobU ← | cobinamide‑P guanylyltransferase/cobinamide kinase |
| RA | 2,070,778 | T→C | intergenic (+304/‑8) | yoeA → / → yeeP | CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA/CP4‑44 prophage; putative GTP‑binding protein |
| RA | 2,114,879 | G→A | Q340* (CAA→TAA) | wcaM ← | putative colanic acid biosynthesis protein WcaM |
| RA | 2,143,684 | (G)6→7 | coding (419/3318 nt) | dgcE → | putative diguanylate cyclase DgcE |
| RA | 2,152,125 | T→C | G116G (GGA→GGG) | pphC ← | protein‑serine/threonine phosphatase PphC |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,237,246 | T→C | T170A (ACC→GCC) | mglC ← | D‑galactose/methyl‑galactoside ABC transporter membrane subunit |
| JC | 2,288,561 | (C)7→10 | pseudogene (354/2525 nt) | yejO ← | adhesin‑like autotransporter YejO |
| RA | 2,320,920 | T→C | V293A (GTT→GCT) | atoS → | sensory histidine kinase AtoS |
| RA | 2,337,694 | T→C | D576G (GAC→GGC) | gyrA ← | DNA gyrase subunit A |
| RA | 2,403,371 | T→C | T159A (ACC→GCC) | nuoC ← | NADH:quinone oxidoreductase subunit CD |
| RA | 2,412,094 | G→A | intergenic (‑5/+6) | hxpA ← / ← yfbU | hexitol phosphatase A/UPF0304 family protein YfbU |
| RA | 2,421,441 | C→T | H39H (CAC→CAT) | folX → | dihydroneopterin triphosphate 2'‑epimerase |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,474,724 | T→C | R231R (CGT→CGC) | yfdQ → | CPS‑53 (KpLE1) prophage; protein YfdQ |
| RA | 2,492,953 | G→C | A101G (GCC→GGC) | frc ← | formyl‑CoA transferase |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,625,316 | T→C | C68R (TGT→CGT) | ppx → | exopolyphosphatase |
| RA | 2,729,374 | T→C | noncoding (71/76 nt) | gltW ← | tRNA‑Glu |
| RA | 2,761,279 | A→G | intergenic (+106/+72) | yfjJ → / ← abpB | CP4‑57 prophage; protein YfjJ/CP4‑57 prophage; putative helicase YfjK |
| RA | 2,780,452 | G→A | R759C (CGC→TGC) | ypjA ← | adhesin‑like autotransporter YpjA |
| RA | 2,788,119 | G→A | pseudogene (1723/2253 nt) | ygaQ → | putative uncharacterized protein YgaQ |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,833,153 | C→T | S226S (TCC→TCT) | norV → | anaerobic nitric oxide reductase flavorubredoxin |
| RA | 2,846,372 | T→C | T34A (ACT→GCT) | hycE ← | formate hydrogenlyase subunit HycE |
| RA | 2,849,612 | T→C | S80G (AGC→GGC) | hycB ← | formate hydrogenlyase subunit HycB |
| RA | 2,853,794 | Δ1 bp | coding (541/1011 nt) | hypE → | hydrogenase maturation protein, carbamoyl dehydratase |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,868,295 | T→C | A153A (GCA→GCG) | nlpD ← | murein hydrolase activator NlpD |
| RA | 2,876,427 | T→C | intergenic (‑98/‑154) | cysD ← / → iap | sulfate adenylyltransferase subunit 2/alkaline phosphatase isozyme conversion protein |
| RA | 2,912,591 | T→C | H354R (CAC→CGC) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 2,937,348 | T→C | Y589H (TAC→CAC) | fucI → | L‑fucose isomerase |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 2,968,380 | T→C | N19D (AAT→GAT) | ptsP ← | phosphoenolpyruvate‑protein phosphotransferase PtsP |
| RA | 3,001,304 | (G)7→8 | coding (960/2259 nt) | xdhA → | putative xanthine dehydrogenase molybdenum‑binding subunit XdhA |
| RA | 3,037,280 | (T)5→6 | coding (827/1734 nt) | recJ ← | ssDNA‑specific exonuclease RecJ |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,184,476 | (A)7→8 | intergenic (‑10/‑364) | ribB ← / → ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| RA | 3,192,056 | T→A | intergenic (‑117/‑152) | glgS ← / → yqiJ | surface composition regulator/putative inner membrane protein |
| RA | 3,208,763 | T→C | V247A (GTT→GCT) | ttdT → | L‑tartrate:succinate antiporter |
| RA | 3,210,770 | G→A | intergenic (‑227/‑11) | tsaD ← / → rpsU | N(6)‑L‑threonylcarbamoyladenine synthase, TsaD subunit/30S ribosomal subunit protein S21 |
| RA | 3,245,976 | G→A | P251P (CCG→CCA) | exuT → | hexuronate transporter |
| RA | 3,247,296 | G→A | W215* (TGG→TGA) | exuR → | DNA‑binding transcriptional repressor ExuR |
| RA | 3,273,700 | C→T | G403D (GGC→GAC) | garP ← | galactarate/glucarate/glycerate transporter GarP |
| RA | 3,304,813 | (C)7→9 | coding (1005/1245 nt) | mtr ← | tryptophan:H(+) symporter Mtr |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,369,301 | (T)6→7 | coding (178/465 nt) | yhcH ← | DUF386 domain‑containing protein YhcH |
| RA | 3,369,628 | G→A | G241G (GGC→GGT) | nanK ← | N‑acetylmannosamine kinase |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,413,892 | T→C | L10P (CTG→CCG) | acrE → | multidrug efflux pump membrane fusion lipoprotein AcrE |
| RA | 3,486,874 | C→T | P28P (CCC→CCT) | yhfK → | putative transporter YhfK |
| RA | 3,495,261 | A→G | K417K (AAA→AAG) | nirB → | nitrite reductase catalytic subunit NirB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,574,756 | G→A | G41G (GGC→GGT) | asd ← | aspartate‑semialdehyde dehydrogenase |
| RA | 3,590,205 | G→A | A236V (GCC→GTC) | ugpA ← | sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpA |
| RA | 3,614,979 | A→G | H438R (CAC→CGC) | nikA → | Ni(2(+)) ABC transporter periplasmic binding protein |
| RA | 3,712,106 | A→G | intergenic (‑99/+130) | yhjX ← / ← yhjY | putative pyruvate transporter/conserved protein YhjY |
| RA | 3,739,214 | (G)5→6 | coding (1718/2031 nt) | malS → | alpha‑amylase |
| RA | 3,778,503 | T→C | F369L (TTC→CTC) | lldP → | lactate/glycolate:H(+) symporter LldP |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,926,533 | T→C | intergenic (‑78/+12) | mioC ← / ← asnC | flavoprotein MioC/DNA‑binding transcriptional dual regulator AsnC |
| RA | 3,976,924 | A→G | Q216R (CAG→CGG) | wzxE → | lipid III flippase |
| RA | 4,091,820 | G→A | L183F (CTT→TTT) | frvB ← | putative PTS enzyme IIBC component FrvB |
| RA | 4,108,056 | G→C | V169L (GTG→CTG) | pfkA → | 6‑phosphofructokinase I |
| RA | 4,226,907 | A→G | H1027R (CAC→CGC) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,241,093 | C→T | G388S (GGT→AGT) | xylE ← | D‑xylose:H(+) symporter |
| RA | 4,255,072 | A→G | G465G (GGT→GGC) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| RA | 4,258,984 | A→G | T415A (ACG→GCG) | dinF → | DNA damage‑inducible protein F |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,328,006 | C→T | P291L (CCG→CTG) | crfC → | clamp‑binding sister replication fork colocalization protein |
| RA | 4,346,487 | G→A | A280A (GCC→GCT) | fumB ← | fumarase B |
| RA | 4,396,661 | A→G | G199G (GGA→GGG) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,400,926 | C→A | S85R (AGC→AGA) | hflX → | ribosome rescue factor HflX |
| RA | 4,405,247 | T→C | V187V (GTT→GTC) | purA → | adenylosuccinate synthetase |
| RA | 4,411,727 | A→G | E142E (GAA→GAG) | yjfK → | conserved protein YjfK |
| RA | 4,415,730 | A→G | T486A (ACT→GCT) | aidB → | putative acyl‑CoA dehydrogenase AidB |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,474,275 | (C)6→7 | coding (152/594 nt) | bdcR → | putative transcriptional regulator BdcR |
| RA | 4,485,191 | T→C | Y254C (TAC→TGC) | pepA ← | aminopeptidase A/I |
| RA | 4,488,579 | (C)7→8 | coding (1485/1503 nt) | yjgR ← | DUF853 domain‑containing protein YjgR |
| RA | 4,530,092 | A→G | V51A (GTC→GCC) | sgcC ← | putative PTS enzyme IIC component SgcC |
| RA | 4,553,532 | C→T | A211V (GCG→GTG) | uxuB → | D‑mannonate oxidoreductase |
| RA | 4,556,769 | (T)9→8 | coding (116/144 nt) | ytiD → | protein YtiD |
| RA | 4,576,245 | T→A | pseudogene (2111/2721 nt) | yjiV → | putative uncharacterized protein YjiV |
| RA | 4,606,330 | (G)8→9 | noncoding (72/87 nt) | leuQ ← | tRNA‑Leu |
| RA | 4,636,147 | A→G | V47V (GTA→GTG) | creB → | DNA‑binding transcriptional regulator CreB |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196287 | 1211431 | 15145 | 13 [11] | [10] 12 | [icd]–[icdC] | [icd],ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,[icdC] |
| * | * | ÷ | NC_000913 | 1633064–1633220 | 1633816–1633634 | 415–753 | 13 [9] | [11] 12 | ydfK–[pinQ] | ydfK,[pinQ] |
| * | * | ÷ | NC_000913 | 3423768–3424234 | 3424536–3424238 | 5–769 | 12 [11] | [11] 16 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 340035 = | NA (NA) | 47 (0.940) | 17/274 | 1.7 | NA | coding (243/297 nt) | yahH | putative uncharacterized protein YahH |
| ? | NC_000913 | 377322 = | NA (NA) | intergenic (+11/+213) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 374922 = | NA (NA) | 21 (0.570) | 11/202 | 1.8 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377430 = | NA (NA) | intergenic (+119/+105) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 374963 | NA (NA) | 37 (1.070) | 13/190 | 1.3 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 375118 | NA (NA) | 19 (0.480) | 11/216 | 2.0 | NA | noncoding (1/36 nt) | other | REP31d |
| ? | NC_000913 | = 377333 | NA (NA) | intergenic (+22/+202) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 375160 | NA (NA) | 26 (0.520) +T |
14/274 | 2.1 | NA | noncoding (28/34 nt) | other | REP31e |
| ? | NC_000913 | = 377491 | NA (NA) | noncoding (32/34 nt) | other | REP32d | |||||
| * | ? | NC_000913 | = 375165 | NA (NA) | 7 (0.200) | 6/192 | 2.9 | NA | noncoding (33/34 nt) | other | REP31e |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 375219 | NA (NA) | 24 (0.610) | 19/216 | 0.9 | NA | noncoding (1/36 nt) | other | REP31f |
| ? | NC_000913 | = 377333 | NA (NA) | intergenic (+22/+202) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 375246 | NA (NA) | 14 (0.310) +GAACGCCTTATCCGGT |
10/244 | 2.5 | NA | noncoding (13/34 nt) | other | REP31g |
| ? | NC_000913 | = 377491 | NA (NA) | noncoding (32/34 nt) | other | REP32d | |||||
| * | ? | NC_000913 | 377321 = | NA (NA) | 31 (0.620) | 14/274 | 2.1 | NA | intergenic (+10/+214) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| ? | NC_000913 | 4325851 = | NA (NA) | intergenic (‑110/+548) | yjdN/yjdM | conserved protein YjdN/conserved protein YjdM | |||||
| * | ? | NC_000913 | 608007 = | NA (NA) | 20 (0.490) | 8/224 | 2.8 | 36.4% | noncoding (1/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 609352 = | 35 (0.850) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
| * | ? | NC_000913 | 3363001 = | 86 (1.700) | 74 (1.470) | 47/274 | 0.1 | 63.4% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 0 (0.000) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 69 (1.370) | 47/276 | 0.1 | 98.6% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 1 (0.020) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||