Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
142 |
96.2 |
3256224 |
98.9% |
3220405 |
138.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,102,635 |
Δ1 bp |
coding (562/651 nt) |
csgD ← |
DNA‑binding transcriptional dual regulator CsgD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,102,632 | 0 | T | . | 98.9%
| 388.9
/ ‑1.9
| 94 | coding (565/651 nt) | csgD | DNA‑binding transcriptional dual regulator CsgD |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (36/57); total (37/57) |
| Fisher's exact test for biased strand distribution p-value = 3.94e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.58e-01 |
CGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCGTTTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACC > NC_000913/1102493‑1102767
|
cggcgAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCGt > 1:393403/1‑140 (MQ=255)
ggcgAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCGtt < 2:1099573/140‑1 (MQ=255)
aaCAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCGtttaac < 1:319470/140‑4 (MQ=255)
aGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGt < 2:374771/140‑1 (MQ=255)
aaaTTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTAt > 1:1140124/1‑140 (MQ=255)
ttCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTAtttt < 2:573493/140‑1 (MQ=255)
cTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCg < 2:1519778/140‑1 (MQ=255)
cTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCg < 2:827942/140‑1 (MQ=255)
cTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCg < 2:1180525/140‑1 (MQ=255)
cTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCg < 1:1303338/140‑1 (MQ=255)
cTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCg < 1:1396975/140‑1 (MQ=255)
cTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCATTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCg < 1:237615/140‑1 (MQ=255)
gccgccACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCt > 2:1088726/1‑140 (MQ=255)
aGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACaacgaa > 2:1207834/1‑140 (MQ=255)
gCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACaacgaac < 2:453999/140‑1 (MQ=255)
cGTAAATAACGTTTCATGGTTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACaacgaacg > 2:1517685/1‑140 (MQ=255)
cGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACaacgaacg > 1:673931/1‑140 (MQ=255)
cGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACaacgaacg > 1:569791/1‑140 (MQ=255)
cGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGACTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGGACaacgaacg > 2:688229/1‑140 (MQ=255)
tAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAg < 2:809200/140‑1 (MQ=255)
tAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAg < 1:113039/140‑1 (MQ=255)
tAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAg < 1:388353/140‑1 (MQ=255)
aaaTAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGc < 2:96000/140‑1 (MQ=255)
aaTAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCg < 2:569791/140‑1 (MQ=255)
aaTAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCg < 2:576739/140‑1 (MQ=255)
aTAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGa > 2:1401340/1‑140 (MQ=255)
tAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGAt < 1:972151/140‑1 (MQ=255)
aaCGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGAtc < 2:1251997/140‑1 (MQ=255)
aCGCTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGAtct < 1:1177602/140‑1 (MQ=255)
cGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGAtctc > 1:98997/1‑140 (MQ=255)
cGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGAtctc > 1:785033/1‑140 (MQ=255)
tCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGtta > 2:721632/1‑140 (MQ=255)
cATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGttat > 2:1042541/1‑140 (MQ=255)
gCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGa < 2:393403/140‑1 (MQ=255)
cTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAacgaacga < 1:635090/122‑1 (MQ=255)
cTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAacgaacga > 2:635090/1‑122 (MQ=255)
tttATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGAcg < 1:51313/140‑1 (MQ=255)
tttATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGAcg < 2:673931/140‑1 (MQ=255)
tttATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGACTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGAcg < 1:688229/140‑1 (MQ=255)
tATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGAtct > 1:1056149/1‑126 (MQ=255)
tATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGAtct < 2:1056149/126‑1 (MQ=255)
tATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGAcgcg < 1:721632/140‑1 (MQ=255)
tATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGAcgcg > 1:34642/1‑140 (MQ=255)
tATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGAcgcg < 1:406472/140‑1 (MQ=255)
aTCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACgcgc < 1:1298150/140‑1 (MQ=255)
cGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCg < 2:34642/140‑1 (MQ=255)
tGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATAc > 1:1446521/1‑140 (MQ=255)
aGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGAcgcg < 2:1078684/131‑1 (MQ=255)
aGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGAcgcg > 1:1078684/1‑131 (MQ=255)
aGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGc < 1:1141125/140‑1 (MQ=255)
aGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGc < 2:1556008/140‑1 (MQ=255)
ggTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCa < 1:1401340/140‑1 (MQ=255)
aTCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCa < 1:1399186/136‑1 (MQ=255)
aTCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCa > 2:1399186/1‑136 (MQ=255)
aTCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCtt > 1:835105/1‑140 (MQ=255)
aTCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCtt > 2:669770/1‑140 (MQ=255)
tGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAg > 1:1215354/1‑140 (MQ=255)
tGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAg > 1:350829/1‑140 (MQ=255)
ggAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATAAGACGCGCCGATACGCAGCTTATTCAGGAtctc > 1:821234/1‑140 (MQ=255)
ggAAACCGCTTGTGTCCGGTTGTTTACGGCTATCTTCTTGAGAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGAtctc > 2:1150242/1‑140 (MQ=255)
cTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTccc < 2:1049743/140‑1 (MQ=255)
cTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTccc < 1:1042541/140‑1 (MQ=255)
cTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTccc < 2:176291/140‑1 (MQ=255)
ttGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCg < 2:921951/140‑1 (MQ=255)
ttGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCg < 2:835105/140‑1 (MQ=255)
ttGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCg < 1:1128161/140‑1 (MQ=255)
ttGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCg < 2:258958/140‑1 (MQ=255)
ttGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCg < 2:633278/140‑1 (MQ=255)
ttGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCg < 1:259251/140‑1 (MQ=255)
ttGTGTCAGGTTTTTTACGGCTATCTTCTCGAAAAGATTAA‑AAAGATGCG‑TTTAACCGTATTTCCGCAGATGACCAACGACCGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTGCCCg < 2:294131/140‑1 (MQ=255)
gtgtCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGAt > 2:645229/1‑140 (MQ=255)
tCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTATAAAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGa < 1:1473891/140‑1 (MQ=255)
gTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAag > 2:33111/1‑140 (MQ=255)
ttttttACGGCTATCTTCTTGAGAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAagg < 1:1150242/140‑1 (MQ=255)
ttttttACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGTGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAagg < 2:1109924/140‑1 (MQ=255)
ttttttACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAagg < 2:1215354/140‑1 (MQ=255)
ttttttACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAagg > 2:961935/1‑140 (MQ=255)
ttttttACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAagg < 2:1446521/140‑1 (MQ=255)
tttACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAaggagg > 2:1387957/1‑140 (MQ=255)
tACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGc < 1:702015/140‑1 (MQ=255)
tACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGc > 1:1326354/1‑140 (MQ=255)
cTATCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGAtt < 1:1068918/140‑1 (MQ=255)
aTCTTCTTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGACTGATTcc > 2:1061650/1‑140 (MQ=255)
tcttctTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCg > 2:1271202/1‑140 (MQ=255)
tcttctTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCg > 2:1151191/1‑140 (MQ=255)
tcttctTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCg > 2:1574091/1‑140 (MQ=255)
tcttctTGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCg < 2:785033/140‑1 (MQ=255)
cttcttGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGt < 2:717469/140‑1 (MQ=255)
ttcttGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTg < 2:1140124/140‑1 (MQ=255)
tcttGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGc < 1:961935/140‑1 (MQ=255)
tGAAAAGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGACCGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGt < 2:220905/140‑1 (MQ=255)
aaGATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTC‑TTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATaa < 2:350829/140‑1 (MQ=255)
gATTAT‑AAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAAc < 2:1326354/140‑1 (MQ=255)
tat‑aAAGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGAt > 2:337051/1‑140 (MQ=255)
aaaGATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGt > 2:155732/1‑140 (MQ=255)
gATGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTAc < 2:390114/140‑1 (MQ=255)
aTGCGTTTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTAc > 2:523357/1‑140 (MQ=255)
aTGCG‑TTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTAcc > 2:436356/1‑140 (MQ=255)
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CGGCGAACAGAAATTCTGCCGCCACAATCCAGCGTAAATAACGTTTCATGGCTTTATCGCCTGAGGTTATCGTTTGCCCAGGAAACCGCTTGTGTCCGGTTTTTTACGGCTATCTTCTTGAAAAGATTAT‑AAAGATGCGTTTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACC > NC_000913/1102493‑1102767
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
