Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 142 96.2 3256224 98.9% 3220405 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,103,745 (T)7→8 intergenic (‑549/‑206) csgD ← / → csgB DNA‑binding transcriptional dual regulator CsgD/curlin, minor subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,103,7381.T98.6% 244.6 / ‑3.8 70intergenic (‑542/‑213)csgD/csgBDNA‑binding transcriptional dual regulator CsgD/curlin, minor subunit
Reads supporting (aligned to +/- strand):  ref base . (1/0);  new base T (33/36);  total (34/36)
Fisher's exact test for biased strand distribution p-value = 4.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.22e-01

AATTTTTTACTGCAAAAAGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATA‑TTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGACATACTTTCCATCGTAACGCAGC  >  NC_000913/1103602‑1103868
                                                                                                                                         |                                                                                                                                    
aaTTTTTTACTGCAAAAAGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATA‑ttt                                                                                                                                   >  2:538452/1‑140 (MQ=255)
   tttttACTGCAAAAAGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATA‑ttt‑‑ttt                                                                                                                              <  2:1317217/140‑1 (MQ=255)
     tttACTGCAAAAAGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATA‑ttt‑‑ttttt                                                                                                                            <  1:361525/140‑2 (MQ=255)
     tttACTGCAAAAAGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATA‑ttt‑‑ttttt                                                                                                                            <  1:1346668/140‑2 (MQ=255)
     tttACTGCAAAAAGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATA‑ttt‑‑ttttt                                                                                                                            <  1:926538/140‑2 (MQ=255)
       tACTGCAAAAAGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATA‑ttt‑‑tttttgc                                                                                                                          <  2:1513275/140‑4 (MQ=255)
       tACTGCAAAAAGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATA‑ttt‑‑tttttgc                                                                                                                          <  1:1016818/140‑4 (MQ=255)
          tGCAAAAAGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTa                                                                                                                        >  2:1484578/1‑140 (MQ=255)
            cAAAAAGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGa                                                                                                                      >  2:387963/1‑140 (MQ=255)
             aaaaaGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGAt                                                                                                                     >  1:191372/1‑140 (MQ=255)
               aaaGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATaa                                                                                                                   <  1:568362/140‑1 (MQ=255)
                 aGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACa                                                                                                                 <  2:1489711/140‑1 (MQ=255)
                 aGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACa                                                                                                                 <  2:191372/140‑1 (MQ=255)
                 aGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACa                                                                                                                 <  2:83055/140‑1 (MQ=255)
                    cGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCg                                                                                                              >  2:115410/1‑140 (MQ=255)
                            gTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACg                                                                                                      <  2:654267/140‑1 (MQ=255)
                            gTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACg                                                                                                      <  2:179128/140‑1 (MQ=255)
                            gTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACg                                                                                                      <  1:346382/140‑1 (MQ=255)
                              cACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTg                                                                                                    <  1:1466310/140‑1 (MQ=255)
                              cACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTg                                                                                                    <  1:387963/140‑1 (MQ=255)
                                   cTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTggg                                                                                                  <  2:1180995/137‑1 (MQ=255)
                                   cTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTggg                                                                                                  >  1:1180995/1‑137 (MQ=255)
                                   cTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTg                                                                                                    <  2:101685/135‑1 (MQ=255)
                                   cTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTg                                                                                                    >  1:101685/1‑135 (MQ=255)
                                   cTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGttt                                                                                               <  1:18451/140‑1 (MQ=255)
                                     tgtgCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTa                                                                                             >  1:830761/1‑140 (MQ=255)
                                      gtgCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACGGCGTATTTACGTGGGTTTTaa                                                                                            <  2:214272/140‑1 (MQ=255)
                                      gtgCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTg                                                                                                    <  2:1495847/132‑1 (MQ=255)
                                      gtgCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTg                                                                                                    >  1:1495847/1‑132 (MQ=255)
                                      gtgCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTaa                                                                                            <  1:1484578/140‑1 (MQ=255)
                                       tgCGCCAGACATATCGCCGCCATCAGCGCCGGGCAAGAAGAATGACTGTTTGGTGCTTTTTGATAGCGGAAAACCGGGATTTAAAAAAAAAAAAAAAATTTT‑‑TTTTGCGTAAATAACAGCGGATTTAAGTGGGGTTTAAt                                                                                           >  2:350759/1‑140 (MQ=255)
                                       tgCGCCAGACATATCGCAGCAAACAGCGACGGGAAAGAAGAATGACTGTCTGGTGCTTTTTTATAACGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAACGTATTTACGTGGGTTTTAAt                                                                                           >  2:786289/1‑140 (MQ=255)
                                       tgCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACg                                                                                                      <  2:1347061/129‑1 (MQ=255)
                                       tgCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACg                                                                                                      >  1:1347061/1‑129 (MQ=255)
                                       tgCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAAt                                                                                           >  2:275449/1‑140 (MQ=255)
                                       tgCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAAt                                                                                           >  2:1150552/1‑140 (MQ=255)
                                          gcAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACt                                                                                        <  1:538452/140‑1 (MQ=255)
                                          gcAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACt                                                                                        <  2:153613/140‑1 (MQ=255)
                                              gACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTA‑TTACGGGGGTTTTAATACTTTGGt                                                                                   >  2:433979/1‑140 (MQ=255)
                                                cATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTa                                                                                  >  1:947699/1‑140 (MQ=255)
                                                cATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTa                                                                                  <  2:965764/140‑1 (MQ=255)
                                                   atCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGa                                                                               >  1:1184126/1‑140 (MQ=255)
                                                        agcaATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTa                                                                                  >  2:21368/1‑132 (MQ=255)
                                                        agcaATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTa                                                                                  <  1:21368/132‑1 (MQ=255)
                                                        agcaATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTaa                                                                          >  1:1472420/1‑140 (MQ=255)
                                                          caATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTaaaa                                                                        >  2:764929/1‑140 (MQ=255)
                                                          caATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTaaaa                                                                        >  2:35588/1‑140 (MQ=255)
                                                          caATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTaaaa                                                                        <  2:1184126/140‑1 (MQ=255)
                                                                 cGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGaaaa                                                                 >  1:1180047/1‑140 (MQ=255)
                                                                 cGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGaaaa                                                                 <  2:412166/140‑1 (MQ=255)
                                                                      ggCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACa                                                            >  2:1224956/1‑140 (MQ=255)
                                                                        cAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAAc                                                          <  1:1048017/140‑1 (MQ=255)
                                                                        cAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAAc                                                          <  1:275449/140‑1 (MQ=255)
                                                                           gaagaaTGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAAcgcg                                                       <  2:944445/140‑1 (MQ=255)
                                                                                aTGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGt                                                  <  2:830761/140‑1 (MQ=255)
                                                                                 tGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTg                                                 >  1:724509/1‑140 (MQ=255)
                                                                                 tGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTg                                                 >  2:595001/1‑140 (MQ=255)
                                                                                   aCTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCgg                                                    <  2:666189/135‑1 (MQ=255)
                                                                                   aCTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCgg                                                    >  1:666189/1‑135 (MQ=255)
                                                                                     tGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGtt                                             >  2:1251670/1‑140 (MQ=255)
                                                                                       tCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGttat                                           >  2:747585/1‑140 (MQ=255)
                                                                                        cTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGttatt                                          <  1:595001/140‑1 (MQ=255)
                                                                                         tGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGttatta                                         >  2:747782/1‑140 (MQ=255)
                                                                                              cTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAat                                    >  2:97928/1‑140 (MQ=255)
                                                                                                 tttGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATAtt                                 >  1:453604/1‑140 (MQ=255)
                                                                                                   tGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTc                               <  2:1444075/140‑1 (MQ=255)
                                                                                                         cGGAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGa                         >  1:1399562/1‑140 (MQ=255)
                                                                                                           gAAAACGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGACa                       <  2:1180047/140‑1 (MQ=255)
                                                                                                             aaaCGGAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGACATa                     <  2:632737/140‑1 (MQ=255)
                                                                                                                 ggAGATTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGACATACttt                 >  2:1534381/1‑140 (MQ=255)
                                                                                                                  gagaTTTAAAAGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGACATACTTTc                <  1:345283/140‑1 (MQ=255)
                                                                                                                            aGAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGACATACTTTCCATCGTAACg      <  2:751770/140‑1 (MQ=255)
                                                                                                                             gAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGACATACTTTCCATCGTAACGc     <  1:1534381/140‑1 (MQ=255)
                                                                                                                             gAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGACATACTTTCCATCGTAACGc     <  1:350759/140‑1 (MQ=255)
                                                                                                                             gAAAACAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGACATACTTTCCATCGTAACGc     <  2:1472420/140‑1 (MQ=255)
                                                                                                                               aaaCAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGACATACTTTCCATCGTAACGCAg   >  2:758984/1‑140 (MQ=255)
                                                                                                                               aaaCAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGACATACTTTCCATCGTAACGCAg   >  1:1076266/1‑140 (MQ=255)
                                                                                                                                aaCAAAATATTTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGACATACTTTCCATCGTAACGCAGc  >  2:578143/1‑140 (MQ=255)
                                                                                                                                 aaaaaaTA‑TTTTGTTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGACATACTTTCCATCGTAACGCAGc  >  2:1084820/3‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                    
AATTTTTTACTGCAAAAAGACGAGGTTTGTCACGGCTTGTGCGCAAGACATATCGCAGCAATCAGCGACGGGCAAGAAGAATGACTGTCTGGTGCTTTTTGATAGCGGAAAACGGAGATTTAAAAGAAAACAAAATA‑TTT‑‑TTTTGCGTAGATAACAGCGTATTTACGTGGGTTTTAATACTTTGGTATGAACTAAAAAAGAAAAATACAACGCGCGGGTGAGTTATTAAAAATATTTCCGCAGACATACTTTCCATCGTAACGCAGC  >  NC_000913/1103602‑1103868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A