Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F13 I1 R1 24 670.1 22273598 98.8% 22006314 140.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,078,126 T→C L63L (TTG→CTG)  yeeW → CP4‑44 prophage; putative uncharacterized protein YeeW

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,078,1260TC99.1% 2345.6 / 2.8 562L63L (TTG→CTG) yeeWCP4‑44 prophage; putative uncharacterized protein YeeW
Reads supporting (aligned to +/- strand):  ref base T (3/2);  new base C (284/273);  total (287/275)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 573 total aligned reads displayed.

CGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTGCAGCTTCTGCACCAGAACCGGTGAATCTCACTCAAC  >  NC_000913/2077977‑2078272
                                                                                                                                                     |                                                                                                                                                  
  cTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTg                                                                                                                                                  <  1:4598852/150‑1 (MQ=255)
    ggATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAgctgct                                                                                                                                                >  1:4599494/1‑150 (MQ=255)
     gATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGc                                                                                                                                                 <  1:4599023/148‑1 (MQ=255)
         tGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGt                                                                                                                                              >  1:4599502/1‑147 (MQ=255)
         tGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTaa                                                                                                                                            <  1:4598553/149‑1 (MQ=255)
          ggggCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTaa                                                                                                                                            <  2:4598991/148‑1 (MQ=255)
           gggCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGAc                                                                                                                                         <  2:4599086/150‑1 (MQ=255)
           gggCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTCATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTg                                                                                                                                                  >  2:4599508/1‑141 (MQ=255)
             gCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACaa                                                                                                                                       >  1:4599514/1‑150 (MQ=255)
             gCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACa                                                                                                                                        <  2:4599247/149‑1 (MQ=255)
               acaTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATg                                                                                                                                     >  2:4599518/1‑150 (MQ=255)
                   tGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGCAACACCGGCAACTTATGCCAGCCCTCACCAGctgctgc                                                                                                                                              >  2:4599530/1‑136 (MQ=255)
                    gTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGt                                                                                                                                 >  1:4599533/1‑149 (MQ=255)
                       gTTGACATTGATGGTGTTAATATCACTGAACTGATTAATNAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATa                                                                                                                             <  2:4599078/150‑1 (MQ=255)
                        ttGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATAc                                                                                                                            <  2:4598684/150‑1 (MQ=255)
                          gACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAg                                                                                                                          >  1:4599542/1‑150 (MQ=255)
                             aTTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAggg                                                                                                                        >  1:4599550/1‑149 (MQ=255)
                             aTTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAggg                                                                                                                        >  2:4599551/1‑149 (MQ=255)
                                 aTGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAg                                                                                                                   >  1:4599563/1‑150 (MQ=255)
                                 aTGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAg                                                                                                                   <  2:4599062/150‑1 (MQ=255)
                                 aTGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAg                                                                                                                   >  2:4599564/1‑150 (MQ=255)
                                  tGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGt                                                                                                                  <  2:4598981/150‑1 (MQ=255)
                                     tgtTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGc                                                                                                                >  2:4599574/1‑149 (MQ=255)
                                      gtTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCa                                                                                                              >  1:4599575/1‑150 (MQ=255)
                                        tAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCa                                                                                                              >  1:4599582/1‑148 (MQ=255)
                                          atatCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGc                                                                                                                >  2:4599590/1‑144 (MQ=255)
                                           tatCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAAc                                                                                                         >  1:4599596/1‑150 (MQ=255)
                                              cACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACca                                                                                                       >  1:4599607/1‑149 (MQ=255)
                                               actgaactgaTTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACca                                                                                                       >  2:4599608/1‑148 (MQ=255)
                                                   aactgaTTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAAcccc                                                                                                      >  2:4599618/1‑143 (MQ=255)
                                                   aactgaTTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGaaa                                                                                                 <  1:4599146/150‑1 (MQ=255)
                                                   aactgaTTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGa                                                                                                   <  1:4599110/148‑1 (MQ=255)
                                                    actgaTTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAAc                                                                                                <  1:4599003/150‑1 (MQ=255)
                                                     ctgaTTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGaaa                                                                                                 >  2:4599624/1‑148 (MQ=255)
                                                        aTTAATAAGGCCGCTGAAAACGGTTATTTACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGACAACTTATGCCAGCCCTCACCAGCTGCNGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACcacaa                                                                                                    >  2:4599630/1‑141 (MQ=255)
                                                        aTTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGc                                                                                             <  1:4599238/149‑1 (MQ=255)
                                                        aTTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCa                                                                                            <  2:4598968/150‑1 (MQ=255)
                                                         ttAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCAc                                                                                           >  1:4599632/1‑150 (MQ=255)
                                                          taataaGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACt                                                                                          >  1:4599639/1‑150 (MQ=255)
                                                           aataaGGCCGCTGAAAACGGTTATTCCCTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACt                                                                                          <  2:4599190/149‑1 (MQ=255)
                                                            ataaGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAATAGCACtgt                                                                                        >  2:4599647/1‑150 (MQ=255)
                                                            ataaGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACtgt                                                                                        >  1:4599649/1‑150 (MQ=255)
                                                            ataaGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACtg                                                                                         <  1:4598938/149‑1 (MQ=255)
                                                                 gCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTCTGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTcc                                                                                   >  2:4599660/1‑150 (MQ=255)
                                                                 gCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTcc                                                                                   >  1:4599659/1‑150 (MQ=255)
                                                                     ntGAAAACGGTTATTCGCTCCGCGTGGTCGAGGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAACCCTCACCAGCTGCTGTAAGACAATGCa                                                                                                                                   <  2:4598913/97‑1 (MQ=255)
                                                                      tGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTAt                                                                              >  1:4599671/1‑150 (MQ=255)
                                                                      tGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTAt                                                                              >  2:4599670/1‑150 (MQ=255)
                                                                        aaaaCGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATGAACcac                                                                                                      <  2:4599039/124‑1 (MQ=255)
                                                                         aaaCGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTAtt                                                                             >  2:4599680/1‑148 (MQ=255)
                                                                         aaaCGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTAtt                                                                             >  1:4599684/1‑148 (MQ=255)
                                                                         aaaCGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTaa                                                                           <  1:4598980/150‑1 (MQ=255)
                                                                         aaaCGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTaa                                                                           <  1:4599127/150‑1 (MQ=255)
                                                                         aaaCGGTGATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTaa                                                                           <  2:4598868/150‑1 (MQ=255)
                                                                          aaCGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAg                                                                          <  2:4599323/150‑1 (MQ=255)
                                                                           aCGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACa                                                                                               >  2:4599690/1‑128 (MQ=255)
                                                                            cGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAg                                                                          >  1:4599694/1‑148 (MQ=255)
                                                                             ggTTAGTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAg                                                                       <  2:4599232/150‑1 (MQ=255)
                                                                               ttATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGc                                                                     <  1:4599067/150‑1 (MQ=255)
                                                                                 aTTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGCGATACAGGGTATAGTGc                                                                                                                <  2:4599101/105‑1 (MQ=255)
                                                                                 aTTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGACCTCACCAGCTGCTGTAAGACAATGCAGTGATACAgg                                                                                                                         >  2:4599705/1‑96 (MQ=255)
                                                                                  ttCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGNGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGc                                                                     >  1:4599707/1‑147 (MQ=255)
                                                                                    cACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCaa                                                                   >  1:4599715/1‑147 (MQ=255)
                                                                                     aCTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAag                                                                  <  2:4598889/147‑1 (MQ=255)
                                                                                     aCTCCGCGTGGTGGATGACCGTGACTCTACCGAAACAACGGCAACTTATGCCAGCCCTCACCNGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAagag                                                                <  1:4599162/149‑1 (MQ=255)
                                                                                      cTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAagag                                                                >  2:4599718/1‑148 (MQ=255)
                                                                                       tCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAagag                                                                >  1:4599724/1‑147 (MQ=255)
                                                                                       tCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAag                                                                  <  1:4599056/145‑1 (MQ=255)
                                                                                         cgcgTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGagaag                                                             <  1:4598896/148‑1 (MQ=255)
                                                                                         cgcgTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGAt                                                           <  1:4599040/150‑1 (MQ=255)
                                                                                             tggtggATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTcc                                                       >  1:4599733/1‑150 (MQ=255)
                                                                                               gtggATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCtt                                                     <  1:4598775/150‑1 (MQ=255)
                                                                                                tggATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTa                                                    <  1:4599181/150‑1 (MQ=255)
                                                                                                   aTGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTAccc                                                 >  2:4599737/1‑150 (MQ=255)
                                                                                                   aTGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTAccc                                                 <  1:4598952/150‑1 (MQ=255)
                                                                                                    tGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCt                                                <  2:4599159/150‑1 (MQ=255)
                                                                                                    tGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCt                                                <  2:4599138/150‑1 (MQ=255)
                                                                                                      aCCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCCCCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTg                                               <  2:4598796/149‑1 (MQ=255)
                                                                                                       ccGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTgcg                                             >  1:4599745/1‑150 (MQ=255)
                                                                                                        cGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTgcgc                                            >  2:4599748/1‑150 (MQ=255)
                                                                                                        cGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTgcgc                                            <  1:4599199/150‑1 (MQ=255)
                                                                                                         gTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGcc                                           <  1:4598705/150‑1 (MQ=255)
                                                                                                          tGACTCTACCGAAACACCAGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCa                                          <  1:4599089/150‑1 (MQ=255)
                                                                                                            aCTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATc                                        >  1:4599752/1‑150 (MQ=255)
                                                                                                              tctACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCt                                       <  1:4599329/149‑1 (MQ=255)
                                                                                                                tACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTg                                      <  1:4599447/148‑1 (MQ=255)
                                                                                                                tACCGAAACACCGGCAACGTAGGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGt                                                                                                                       <  2:4599024/67‑1 (MQ=255)
                                                                                                                  ccGAAACACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTGCAGc                                  <  2:4599298/150‑1 (MQ=255)
                                                                                                                      aaCACCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTGCAGCTTCt                              <  1:4599273/150‑1 (MQ=255)
                                                                                                                       acacCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTGCAGCTTCTg                             >  1:4599762/1‑150 (MQ=255)
                                                                                                                         acCGGCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTGCAGCTTCTGCa                           >  2:4599765/1‑150 (MQ=255)
                                                                                                                            ggCAACTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTGCAGCTTCTGCACCa                        <  2:4599405/150‑1 (MQ=255)
                                                                                                                                 cTTATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGCGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTGCAGCTTCTGCACCAGAAcc                   <  2:4599196/150‑1 (MQ=255)
                                                                                                                                   tATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGCAGATGTCCt                                                      >  2:4599776/1‑113 (MQ=255)
                                                                                                                                   tATGCCAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTGCAGCTTCTGCACCAGAACCg                  >  1:4599775/1‑149 (MQ=255)
                                                                                                                                       ccAGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTGCAGCTTCTGCACCAGAACCGGTGaa             <  1:4599362/150‑1 (MQ=255)
                                                                                                                                         aGCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTGCAGCTTCTGCACCAGAACCGGTGAAtc           >  2:4599785/1‑150 (MQ=255)
                                                                                                                                          gCCCTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTGCAGCTTCTGCACCAGAACCGGTGAAtc           <  1:4599220/149‑1 (MQ=255)
                                                                                                                                            ccTCACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTGCAGCTTCTGCACCAGAACCGGTGAATctca        >  1:4599787/1‑150 (MQ=255)
                                                                                                                                               cACCAGCTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTGCAGCTTCTGCACCAGAACCGGTGAATctcact      >  1:4599795/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
CGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCTGTATTAAGCAGGCAAGAGAAGATGTCCTTACCCTGCGCCATCTGCAGCTTCTGCACCAGAACCGGTGAATCTCACTCAAC  >  NC_000913/2077977‑2078272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A