Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F13 I1 R1 24 670.1 22273598 98.8% 22006314 140.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,441,780 T→C I107V (ATC→GTC)  rpsK ← 30S ribosomal subunit protein S11

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,441,7800TC99.3% 2914.8 / 3.5 699I107V (ATC→GTC) rpsK30S ribosomal subunit protein S11
Reads supporting (aligned to +/- strand):  ref base T (2/3);  new base C (352/341);  total (354/345)
Fisher's exact test for biased strand distribution p-value = 6.82e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 707 total aligned reads displayed.

ACGACGGCTCAGCTTGAGCTTAGGACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGATGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCAACCTGAGCTGCAAACGGAGTG  >  NC_000913/3441634‑3441925
                                                                                                                                                  |                                                                                                                                                 
acgacgGCTCAGCTTGAGCTTAGGACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTACACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGc                                                                                                                                                 <  2:7853197/149‑1 (MQ=255)
      gCTCAGCTTGAGCTTAGGACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAAcc                                                                                                                                          >  1:7853869/1‑150 (MQ=255)
      gCTCAGCTTGAGCTTAGGACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAAc                                                                                                                                           <  1:7852449/149‑1 (MQ=255)
         cAGCTTGAGCTTAGGACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTg                                                                                                                                        >  2:7853876/1‑149 (MQ=255)
            cTTGAGCTTAGGACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTgcggc                                                                                                                                    <  1:7853289/150‑1 (MQ=255)
            cTTGAGCTTAGGACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTgcggc                                                                                                                                    <  1:7853522/150‑1 (MQ=255)
            cTTCAGCTTAGGACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTgcgg                                                                                                                                     <  2:7853261/149‑1 (MQ=255)
             ttGAGCTTAGGACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTgcggcg                                                                                                                                   >  1:7853886/1‑150 (MQ=255)
               gAGCTTAGGACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGCAACCTGCGGCGtt                                                                                                                                 >  1:7853895/1‑150 (MQ=255)
                  cTTAGGACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGtt                                                                                                                                 >  1:7853905/1‑147 (MQ=255)
                   ttAGGACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTgcggc                                                                                                                                    >  2:7853911/1‑143 (MQ=255)
                       gACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCAc                                                                                                                         <  1:7852957/150‑1 (MQ=255)
                       gACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCAc                                                                                                                         <  2:7853365/150‑1 (MQ=255)
                       gACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGGCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCat                                                                                                                         <  2:7853570/150‑2 (MQ=255)
                         cccAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACg                                                                                                                        >  1:7853922/1‑149 (MQ=255)
                           cAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAAt                                                                                                                     <  1:7852769/150‑1 (MQ=255)
                            aaaTATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTgc                                                                                                                                       >  2:7853935/1‑131 (MQ=255)
                               tatCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAAtag                                                                                                                   >  1:7853938/1‑148 (MQ=255)
                                  cTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGac                                                                                                              >  1:7853951/1‑149 (MQ=255)
                                  cTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGCTCAGAGCACGAATAGTAGAt                                                                                                              >  2:7853952/1‑150 (MQ=255)
                                     gCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTc                                                                                                            <  1:7853180/149‑1 (MQ=255)
                                      ccATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTcg                                                                                                           >  2:7853961/1‑149 (MQ=255)
                                      ccATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTcg                                                                                                           <  1:7853262/149‑1 (MQ=255)
                                        aTTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCgg                                                                                                        >  1:7853974/1‑150 (MQ=255)
                                         ttttCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGGTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGc                                                                                                       >  2:7853979/1‑150 (MQ=255)
                                           ttctttctCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCt                                                                                                     >  1:7853988/1‑150 (MQ=255)
                                            tctttctCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCt                                                                                                     <  2:7853464/149‑1 (MQ=255)
                                             ctttctCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTg                                                                                                    >  1:7853996/1‑149 (MQ=255)
                                               ttctCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGAc                                                                                                 >  1:7854005/1‑150 (MQ=255)
                                                   ccAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTcgcg                                                                                                         >  2:7854018/1‑138 (MQ=255)
                                                   ccAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCg                                                                                              >  1:7854017/1‑149 (MQ=255)
                                                    caacaaACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCgg                                                                                             <  2:7853531/149‑1 (MQ=255)
                                                        aaaCCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCtt                                                                                        >  1:7854037/1‑150 (MQ=255)
                                                        aaaCCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGCAAACCTGCGGCGTTCAGAGCACGAATAATAGATTCTCGGCCTGGACCCGGACCtt                                                                                        >  2:7854036/1‑150 (MQ=255)
                                                         aaCCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCttt                                                                                       <  1:7853489/150‑1 (MQ=255)
                                                          aCCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCttt                                                                                       >  2:7854049/1‑149 (MQ=255)
                                                           ccTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTaa                                                                                     >  1:7854054/1‑150 (MQ=255)
                                                             tGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAAc                                                                                    >  1:7854063/1‑149 (MQ=255)
                                                               gAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAAcc                                                                                   <  2:7853414/148‑1 (MQ=255)
                                                                aaaaCGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGAccc                                                                                               <  1:7853038/135‑1 (MQ=255)
                                                                aaaaCGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCg                                                                                              <  2:7853292/136‑1 (MQ=255)
                                                                aaaaCGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCa                                                                                  >  2:7854072/1‑148 (MQ=255)
                                                                  aaCGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAAc                                                                              >  1:7854079/1‑150 (MQ=255)
                                                                     gAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTc                                                                           >  1:7854088/1‑150 (MQ=255)
                                                                      aGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTc                                                                           >  2:7854092/1‑149 (MQ=255)
                                                                          gTTATACGCGACGATTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGAt                                                                      >  1:7854104/1‑150 (MQ=255)
                                                                           ttATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTCAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGAtt                                                                     <  1:7853325/150‑1 (MQ=255)
                                                                             ataCGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCt                                                                   >  2:7854109/1‑150 (MQ=255)
                                                                              taCGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCtt                                                                  <  2:7853339/150‑1 (MQ=255)
                                                                               aCGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCtt                                                                  >  1:7854117/1‑149 (MQ=255)
                                                                               aCGCGACGTTGTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTgcggc                                                                                                                                    <  2:7853113/83‑1 (MQ=255)
                                                                                   gACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGc                                                             >  1:7854128/1‑150 (MQ=255)
                                                                                     cGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCg                                                           <  1:7853199/150‑1 (MQ=255)
                                                                                       ttttttCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTa                                                         >  2:7854134/1‑150 (MQ=255)
                                                                                       ttttttCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTa                                                         <  1:7853349/150‑1 (MQ=255)
                                                                                         ttttCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTAtt                                                       >  1:7854139/1‑150 (MQ=255)
                                                                                         tgttCTGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCtt                                                                                        <  2:7853084/115‑1 (MQ=255)
                                                                                           ttCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAANCCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTc                                                      <  1:7853553/149‑1 (MQ=255)
                                                                                            tCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCtt                                                    >  1:7854148/1‑150 (MQ=255)
                                                                                             cggcggACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGACGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCCTAACTTCCAGATTCTTGAt                                                               >  2:7854152/1‑138 (MQ=255)
                                                                                              ggcggACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCttt                                                   <  1:7853125/149‑1 (MQ=255)
                                                                                               gcggACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTc                                                  <  1:7853640/149‑1 (MQ=255)
                                                                                                cggACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTc                                                                           <  2:7853230/123‑1 (MQ=255)
                                                                                                cggACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCAc                                                <  2:7853705/150‑1 (MQ=255)
                                                                                                cggACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCAc                                                >  1:7854159/1‑150 (MQ=255)
                                                                                                 tgacgacAAACGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTc                                                  <  2:7852881/146‑1 (MQ=255)
                                                                                                  gacgacAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTa                                                         <  2:7852980/139‑1 (MQ=255)
                                                                                                  gacgacAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACgg                                              <  1:7853462/150‑1 (MQ=255)
                                                                                                    cgacAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCg                                            <  2:7853510/150‑1 (MQ=255)
                                                                                                      acAACCGTTATGAGGGATCTGAGTCACATCAGTAATGTTAGGGACGCGGAAACCTGCGGCGTTCAGAGCACGAAtagtag                                                                                                                <  2:7853152/80‑1 (MQ=255)
                                                                                                      acAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAGCCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGt                                           >  2:7854170/1‑149 (MQ=255)
                                                                                                       cAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCa                                         <  2:7853626/150‑1 (MQ=255)
                                                                                                         aCCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAgc                                       >  1:7854181/1‑150 (MQ=255)
                                                                                                          ccGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAgcg                                      <  1:7853410/150‑1 (MQ=255)
                                                                                                           cGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGGCGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTAtt                                                       <  1:7853434/132‑1 (MQ=255)
                                                                                                             ttATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCaa                                   >  2:7854187/1‑150 (MQ=255)
                                                                                                              tATGAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAAc                                  >  1:7854190/1‑150 (MQ=255)
                                                                                                                 gAGGGATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGc                                <  2:7853739/149‑1 (MQ=255)
                                                                                                                   gggATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTANCCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGctct                             <  1:7853707/150‑1 (MQ=255)
                                                                                                                    ggATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACg                                               >  2:7854203/1‑131 (MQ=255)
                                                                                                                     gATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTctgc                           <  2:7853446/150‑1 (MQ=255)
                                                                                                                     gATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTctgc                           >  1:7854204/1‑150 (MQ=255)
                                                                                                                     gATCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTctgc                           <  2:7853480/150‑1 (MQ=255)
                                                                                                                      aTCGGGGTAACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAgc                                       <  2:7853394/137‑1 (MQ=255)
                                                                                                                      aTCGGAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTctgct                          <  1:7853597/150‑1 (MQ=255)
                                                                                                                         ggAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAAc                                  >  2:7854219/1‑139 (MQ=255)
                                                                                                                         ggAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCtgctgc                        >  1:7854215/1‑149 (MQ=255)
                                                                                                                         ggAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCa                       <  1:7853381/150‑1 (MQ=255)
                                                                                                                          gAGTCACATCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCa                       <  2:7853313/149‑1 (MQ=255)
                                                                                                                             tCACTTCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCAACCt                   >  2:7854231/1‑150 (MQ=255)
                                                                                                                              cacaACAGTAATGTTAGTGAGGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCAGAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCAAc                     <  2:7853830/147‑1 (MQ=255)
                                                                                                                               acaTCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCAACCt                   >  1:7854234/1‑148 (MQ=255)
                                                                                                                                  tCAGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCAACCTGAGCt              <  2:7853603/150‑1 (MQ=255)
                                                                                                                                    aGTAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCAACCTGAGCt              >  1:7854244/1‑148 (MQ=255)
                                                                                                                                      tAATGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCAACCTGAGCTGCa           >  2:7854246/1‑149 (MQ=255)
                                                                                                                                        aTGTTAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCAACCTGAGCTGCaaa         <  2:7853680/149‑1 (MQ=255)
                                                                                                                                            tAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCAACCTGAGCTGCAAACGGa     >  1:7854260/1‑149 (MQ=255)
                                                                                                                                            tAGTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCAACCTGAGCTGCAAACGGAg    >  2:7854259/1‑150 (MQ=255)
                                                                                                                                              gTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCAACCTGAGCTGCAAACGGAGt   <  1:7853574/149‑1 (MQ=255)
                                                                                                                                              gTGACGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCAACCTGAGCTGCAAACGGAGTg  <  1:7853858/150‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                 
ACGACGGCTCAGCTTGAGCTTAGGACCCAAATATCTTGCCATTTTCTTTCTCCAACAAACCTGGAAAACGAGGCGTTATACGCGACGTTTTTTCGGCGGACGACAACCGTTATGAGGGATCGGAGTCACATCAGTAATGTTAGTGATGCGGAAACCTGCGGCGTTCAGAGCACGAATAGTAGATTCGCGGCCTGGACCCGGACCTTTAACCATAACTTCCAGATTCTTGATGCCGTATTCTTTCACGGCGTCAGCGCAACGCTCTGCTGCAACCTGAGCTGCAAACGGAGTG  >  NC_000913/3441634‑3441925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A