Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F13 I1 R1
|
21 |
2440.9 |
80198605 |
99.5% |
79797611 |
141.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,978,440 |
(G)6→7 |
intergenic (‑243/+78) |
flhD ← / ← insB‑5 |
DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,978,434 | 1 | . | G | 96.9%
| 8718.0
/ 266.4
| 2122 | intergenic (‑237/+84) | flhD/insB‑5 | DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB |
| Reads supporting (aligned to +/- strand): ref base . (26/39); new base G (928/1129); total (954/1168) |
| Fisher's exact test for biased strand distribution p-value = 4.49e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 2362 total aligned reads displayed.
GCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGA‑GGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAT > NC_000913/1978286‑1978578
|
cATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGA‑gg > 1:16614163/1‑150 (MQ=255)
tAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGA‑ggg‑gg > 2:16614196/1‑150 (MQ=255)
aGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGA‑ggg‑ggg > 1:16614208/1‑150 (MQ=255)
gAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGA‑ggg‑ggg < 1:16613996/149‑1 (MQ=255)
aaTAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGA‑ggg‑ggggc < 1:16611939/150‑3 (MQ=255)
tAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGA‑ggg‑ggggctg > 2:16614257/1‑146 (MQ=255)
tAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGA‑ggg‑ggggctg > 1:16614260/1‑146 (MQ=255)
tAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGA‑ggg‑ggggctg < 2:16612330/150‑5 (MQ=255)
aggtGCGATAAGCTGCAATAAGCAGAACCACCTTTTTTGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGA‑g < 2:16613415/137‑1 (MQ=255)
ttGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGa < 2:16611684/150‑1 (MQ=255)
gCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGAtt > 1:16614296/1‑150 (MQ=255)
cGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGAttt < 2:16611949/150‑1 (MQ=255)
gATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGAtttt < 2:16611060/150‑1 (MQ=255)
aTAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTTATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGA‑g > 2:16614323/1‑133 (MQ=255)
tAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTc < 2:16612158/149‑1 (MQ=255)
tAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCa < 1:16611536/150‑1 (MQ=255)
aaGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCaa > 1:16614345/1‑150 (MQ=255)
gCAATAAGCAGAACCACCTTTGTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGCTTTTTCCTAAATCGACGCAACTGAACTCGTCACTACCCGCACATCCAACGTAGGGG‑GGGCTGCGATTTTCaataat > 1:16614383/1‑149 (MQ=255)
cAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTATTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGc < 1:16612843/150‑1 (MQ=255)
aTAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCg < 1:16611228/149‑1 (MQ=255)
aaGCAGAACCACCTTTTTTTTTTTTTATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGa > 2:16614430/1‑150 (MQ=255)
aGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGa < 1:16612794/149‑1 (MQ=255)
aGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGAt > 1:16614441/1‑150 (MQ=255)
aaCCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGa > 2:16614482/1‑127 (MQ=255)
accaccTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGA‑GGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGAt < 2:16611459/149‑1 (MQ=255)
ccaccTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGAt > 1:16614493/1‑149 (MQ=255)
ccaccTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATc < 1:16612369/150‑1 (MQ=255)
caccTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATca < 2:16613212/150‑1 (MQ=255)
cTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATcaca > 1:16614527/1‑149 (MQ=255)
tttttGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATcacac < 2:16612464/149‑1 (MQ=255)
tttGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACaa < 2:16612583/149‑1 (MQ=255)
tGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACaaaa > 2:16614558/1‑149 (MQ=255)
ggTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCaa < 1:16610912/122‑1 (MQ=255)
ggTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAac < 1:16611692/149‑1 (MQ=255)
gTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAacac > 1:16614570/1‑150 (MQ=255)
gTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAaca < 1:16611823/149‑1 (MQ=255)
aaTATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCaa > 1:16614611/1‑150 (MQ=255)
atatGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTc > 2:16614626/1‑147 (MQ=255)
atatGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAAt < 1:16613015/150‑1 (MQ=255)
tatGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAAtt < 2:16613585/150‑1 (MQ=255)
tGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTAc > 1:16614649/1‑150 (MQ=255)
cTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGC‑GGGCGGGCTGCGATTTTCAATAATGCGTg > 2:16614688/1‑118 (MQ=255)
ttACAAATAGAAATGGGTCTTTACACTTATCTAAGATGTTGCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCaat < 2:16610102/109‑1 (MQ=255)
tACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTCAc > 1:16614704/1‑149 (MQ=255)
cAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACAt < 1:16613094/149‑1 (MQ=255)
aaaTAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATaa < 2:16612725/150‑1 (MQ=255)
aaTAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATaaa > 2:16614734/1‑150 (MQ=255)
aaTAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATaaa < 2:16612930/150‑1 (MQ=255)
aaTAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATaaa < 1:16612462/150‑1 (MQ=255)
aTAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAAt > 1:16614755/1‑150 (MQ=255)
gAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATgg > 2:16614795/1‑149 (MQ=255)
aaTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATaaa > 1:16614820/1‑144 (MQ=255)
gggTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAAt > 2:16614832/1‑149 (MQ=255)
gTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGAc < 1:16613666/150‑1 (MQ=255)
tCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACATAACACTCAATTACTTAACATAAATGGGTa < 2:16613113/144‑1 (MQ=255)
cTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTa < 1:16612722/126‑1 (MQ=255)
tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTc > 1:16614866/1‑149 (MQ=255)
tACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTcc < 1:16612179/148‑1 (MQ=255)
acacTTATCTAAGATTTTTCCTAAATTGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGATGCGATTTTCAATAATGCGTGATGCAGATCACACaaaa > 2:16614901/1‑112 (MQ=255)
acacTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCaa > 1:16614899/1‑149 (MQ=255)
cacTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACt < 2:16612829/150‑1 (MQ=255)
tATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTAtt > 1:16614941/1‑150 (MQ=255)
tCTAAGATTTTTCCTACATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACaaac > 2:16614964/1‑104 (MQ=255)
tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGa > 1:16614976/1‑148 (MQ=255)
aTTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAgtgt < 1:16612111/150‑1 (MQ=255)
aTTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAgtgt > 1:16615010/1‑150 (MQ=255)
ttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGttt > 2:16615028/1‑150 (MQ=255)
tCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTa < 1:16612659/149‑1 (MQ=255)
tCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACGCAATTACTTANCATAAATGGGTAATGACTCCAACtc > 1:16615059/1‑133 (MQ=255)
cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGt < 1:16613178/150‑1 (MQ=255)
tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt > 2:16615078/1‑150 (MQ=255)
aTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt > 2:16615107/1‑147 (MQ=255)
tCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa < 1:16613296/150‑1 (MQ=255)
cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa > 1:16615126/1‑149 (MQ=255)
gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt < 1:16612034/149‑1 (MQ=255)
gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt < 1:16612273/149‑1 (MQ=255)
gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt < 1:16612904/149‑1 (MQ=255)
gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa < 1:16608741/150‑1 (MQ=255)
aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGt < 2:16612063/142‑1 (MQ=255)
aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt < 1:16613534/148‑1 (MQ=255)
aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa < 2:16612243/150‑1 (MQ=255)
cAACTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc > 2:16615157/1‑150 (MQ=255)
aaCTGTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc > 1:16615172/1‑150 (MQ=255)
tGTACTCGTCACTACACGCACATACAACGGA‑GGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGtttt < 2:16612407/130‑1 (MQ=255)
gTACTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACtt > 2:16615207/1‑116 (MQ=255)
aCTCGTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGa > 1:16615221/1‑150 (MQ=255)
cggcACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc < 2:16611802/145‑1 (MQ=255)
gTCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt < 2:16612653/150‑1 (MQ=255)
tCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa < 2:16613300/134‑1 (MQ=255)
tCACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTg < 2:16614022/150‑1 (MQ=255)
cACTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAGTCATGCGTGATGCAGATCCCACAAAACACTCAACTACTTAACATAAATgg > 2:16615254/1‑92 (MQ=255)
cTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa < 1:16612521/150‑1 (MQ=255)
cTACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa < 2:16613756/150‑1 (MQ=255)
tACACGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt > 1:16615269/1‑150 (MQ=255)
cacGCACATACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt < 1:16613393/148‑1 (MQ=255)
acaTACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc > 2:16615310/1‑127 (MQ=255)
acaTACAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTc > 1:16615306/1‑150 (MQ=255)
cAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAcc < 1:16612971/149‑1 (MQ=255)
cAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAcc < 2:16613033/149‑1 (MQ=255)
cAACGGAGGGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCg < 1:16612580/150‑1 (MQ=255)
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GCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGA‑GGG‑GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAT > NC_000913/1978286‑1978578
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
