Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F13 I1 R1
|
21 |
2440.9 |
80198605 |
99.5% |
79797611 |
141.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,018,530 |
(C)6→7 |
coding (145/1128 nt) |
fliK → |
flagellar hook‑length control protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,018,524 | 1 | . | C | 98.2%
| 8558.4
/ 147.7
| 2065 | coding (139/1128 nt) | fliK | flagellar hook‑length control protein |
| Reads supporting (aligned to +/- strand): ref base . (25/13); new base C (975/1052); total (1000/1065) |
| Fisher's exact test for biased strand distribution p-value = 3.35e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 2268 total aligned reads displayed.
AGGAAACCTGAATGATTCGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑CCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAACGACGAACAATCCACAT > NC_000913/2018375‑2018668
|
aaaCCTGAATGATTCGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑ccc > 1:16947035/1‑150 (MQ=255)
aaaCCTGAATGATTCGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑ccc > 2:16947030/1‑150 (MQ=255)
tGAATGATTCGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑ccccc‑c > 1:16947078/1‑148 (MQ=255)
tGAATGATTCGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑ccccc‑c > 2:16947078/1‑148 (MQ=255)
aaTGATCCGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑ccccc‑ccagt < 2:16945084/150‑5 (MQ=255)
gATTCGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGc > 1:16947120/1‑150 (MQ=255)
aTTCGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCt > 2:16947129/1‑150 (MQ=255)
ttCGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCtg < 1:16945739/150‑1 (MQ=255)
cGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCtgg > 1:16947161/1‑149 (MQ=255)
cTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCtggtg > 2:16947183/1‑149 (MQ=255)
ttAGCGCCCTTGATTACCGCCGACGTTGACACCAGCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCtggtgg > 1:16947199/1‑149 (MQ=255)
cgcCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACa < 1:16944878/150‑1 (MQ=255)
gcCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCaa > 1:16947238/1‑147 (MQ=255)
gcCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAg < 1:16944208/150‑1 (MQ=255)
gcCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCAGTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCaa > 2:16947235/1‑147 (MQ=255)
tGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAg > 1:16947278/1‑150 (MQ=255)
gATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCCCAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACCACTACCGACAAAGCGG‑ccccc‑c > 2:16947296/1‑125 (MQ=255)
aTTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGc < 2:16943613/149‑1 (MQ=255)
tACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCa > 1:16947317/1‑150 (MQ=255)
aCCGCCTACGTTGACACCACCACCTTGCCTGGCGGGAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGTAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGAt < 2:16946233/142‑1 (MQ=255)
aCCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCa < 1:16945200/149‑1 (MQ=255)
cgccgACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACg > 1:16947349/1‑149 (MQ=255)
gccgACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCAc > 2:16947360/1‑147 (MQ=255)
ccgACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACa < 1:16945695/150‑1 (MQ=255)
gACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACa > 1:16947391/1‑148 (MQ=255)
aCGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACaaaa < 2:16945488/150‑1 (MQ=255)
cGTTGACACCACCACATTGCCTGGCGGNAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCAc < 2:16944478/142‑1 (MQ=255)
cGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCt > 2:16947407/1‑121 (MQ=255)
caccaccacATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGc > 1:16947449/1‑150 (MQ=255)
caccaccacATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGGTGCTGGTGGCAACAGATAAGCCCAAGACAAAAGGCg > 2:16947451/1‑147 (MQ=255)
accacATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCt < 1:16945067/150‑1 (MQ=255)
cacaTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTg < 2:16945800/149‑1 (MQ=255)
cacaTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGa < 2:16944624/150‑1 (MQ=255)
acaTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGAt < 1:16945263/150‑1 (MQ=255)
acaTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGGTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAGAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACTACAAAAg > 1:16947496/1‑137 (MQ=255)
aTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGAt > 2:16947507/1‑148 (MQ=255)
ttccTGGCGGCAAAGCCAGCGATGCTGCACAAGACTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAg < 2:16945197/136‑1 (MQ=255)
gCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGc < 1:16943777/149‑1 (MQ=255)
ccTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCg < 1:16944962/149‑1 (MQ=255)
cTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGa > 1:16947534/1‑149 (MQ=255)
ggcggcAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGcc < 2:16945873/135‑1 (MQ=255)
gcggcAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGata < 2:16944985/148‑1 (MQ=255)
gcggcAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGata < 1:16944758/148‑1 (MQ=255)
cggcAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTg > 2:16947557/1‑150 (MQ=255)
ggcAAAGCCGGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCt < 2:16945576/135‑1 (MQ=255)
cAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGttt > 1:16947580/1‑150 (MQ=255)
aGCCAGCGATGCTGCACATGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCg < 2:16945282/150‑1 (MQ=255)
aGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACaaa > 2:16947607/1‑118 (MQ=255)
aGCCAGCGATGCTGCACAAGATTTGCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCg < 2:16944298/150‑1 (MQ=255)
cAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGAcg < 1:16945416/150‑1 (MQ=255)
aGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGAcgc < 1:16945827/150‑1 (MQ=255)
aGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGAcgc < 1:13390223/150‑1 (MQ=255)
aGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGAcg > 1:16947629/1‑149 (MQ=255)
gCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGAcgcg < 1:16945892/150‑1 (MQ=255)
gATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCg > 2:16947656/1‑143 (MQ=255)
aTGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaa < 1:16945129/150‑1 (MQ=255)
tgctgcACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaac < 2:16946721/150‑1 (MQ=255)
tgctgcACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaac < 1:16946815/150‑1 (MQ=255)
tgctgcACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaa > 1:16947679/1‑149 (MQ=255)
tgcACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAg > 2:16947702/1‑150 (MQ=255)
cacaAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaacaa > 1:16947722/1‑147 (MQ=255)
aaGATTTTCTCGCGTTGTTGAGCGAAGCATTCGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CGGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGAcg < 1:16944496/136‑1 (MQ=255)
aaGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATGGt > 2:16947744/1‑128 (MQ=255)
aGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAAtt < 2:16946112/150‑1 (MQ=255)
aTTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTa > 1:16947775/1‑150 (MQ=255)
tttCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACt > 2:16947789/1‑150 (MQ=255)
ttCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTAc < 2:16944882/148‑1 (MQ=255)
ttCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACt < 1:16945326/149‑1 (MQ=255)
ctcGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGAt > 1:16947820/1‑150 (MQ=255)
cgcgTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCCAATTTa > 2:16947833/1‑143 (MQ=255)
gcgTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGAt < 2:16945372/147‑1 (MQ=255)
gcgTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGAt < 1:16946495/147‑1 (MQ=255)
ttgttgAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCtgt < 2:16946008/150‑1 (MQ=255)
tgttgAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCtgtg > 1:16947872/1‑150 (MQ=255)
tgttgAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑CCCCCACAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCtgtg > 2:16947872/1‑150 (MQ=255)
tgAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACgcgc > 2:16947900/1‑121 (MQ=255)
aGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATg < 1:16944345/149‑1 (MQ=255)
gCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCt < 2:16944775/141‑1 (MQ=255)
cGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCg > 2:16947929/1‑99 (MQ=255)
cGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGaaa < 1:16946043/150‑1 (MQ=255)
aGCATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAacac > 1:16947952/1‑150 (MQ=255)
cATTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGc > 2:16947970/1‑46 (MQ=255)
aGCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTg > 1:16947999/1‑150 (MQ=255)
aGCAGGCCAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGAcg < 2:16946394/105‑1 (MQ=255)
gCAGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTa < 2:16945676/121‑1 (MQ=255)
aGGCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGtca > 2:16948018/1‑150 (MQ=255)
ggCGAGACAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGtcat < 1:16946148/150‑1 (MQ=255)
gagaCAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGtca < 1:16945547/146‑1 (MQ=255)
gagaCAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCaa > 1:16948044/1‑150 (MQ=255)
agaCAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCNACAGATAAGCGCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAac < 1:16945479/150‑1 (MQ=255)
gaCAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAac > 2:16948060/1‑149 (MQ=255)
cAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAac < 2:16944047/131‑1 (MQ=255)
cAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAacgac < 1:16946274/150‑1 (MQ=255)
cAACTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAacgac < 1:16945616/150‑1 (MQ=255)
aCTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCg > 2:16948096/1‑133 (MQ=255)
cTACCGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAACGACGaa > 1:16948102/1‑150 (MQ=255)
cGACAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAACGACGAACaa < 1:16945950/149‑1 (MQ=255)
aCAAAGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAACGACGAACAATc > 2:16948138/1‑149 (MQ=255)
aaaGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAACGACGAACAATCca > 1:16948159/1‑149 (MQ=255)
aGCGGCCCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAACGACGAACAATCCACAt < 1:16944652/150‑1 (MQ=255)
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AGGAAACCTGAATGATTCGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑CCCCC‑CAGTTGCTGGTGGCAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAACGACGAACAATCCACAT > NC_000913/2018375‑2018668
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
