Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F13 I1 R1
|
28 |
562.2 |
19051950 |
96.7% |
18423235 |
140.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,771,218 |
T→C |
V24A (GTC→GCC) |
yfjT → |
CP4‑57 prophage; uncharacterized protein YfjT |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,771,218 | 0 | T | C | 98.7%
| 2207.2
/ 10.3
| 532 | V24A (GTC→GCC) | yfjT | CP4‑57 prophage; uncharacterized protein YfjT |
| Reads supporting (aligned to +/- strand): ref base T (3/4); new base C (307/218); total (310/222) |
| Fisher's exact test for biased strand distribution p-value = 4.58e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 |
Only 100 of 537 total aligned reads displayed.
GGCAAACTGATGGGACGGCTGCTGATACCGTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGTCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCACTCGGTTTTTCTGATCCTCGCCG > NC_000913/2771071‑2771364
|
aaCTGATGGGACGGCTGCTGATACCGTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCg > 1:5320355/1‑149 (MQ=255)
aaCTGATGGGACGGCTGCTGATACCGTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGNTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCACCCg > 2:5320354/1‑149 (MQ=255)
gATGGGACGGCTGCTGATACCGTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGActc > 1:5320363/1‑150 (MQ=255)
aTGGGACGGCTGCTGATACCGTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGActct < 2:5320003/150‑1 (MQ=255)
aTGGGACGGCTGCTGATACCGTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGActct < 1:5319939/150‑1 (MQ=255)
tGGGACGGCTGCTGATACCGTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTg > 2:5320368/1‑150 (MQ=255)
tGGGACGGCTGCTGATACCGTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTg < 1:5320020/150‑1 (MQ=255)
gggACGGCTGCTGATACCGTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTgg > 1:5320373/1‑150 (MQ=255)
ctgctgATACCGTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTgg < 2:5319989/143‑1 (MQ=255)
ctgctgATACCGTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAgg > 1:5320384/1‑150 (MQ=255)
gATACCGTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTAc > 1:5320391/1‑150 (MQ=255)
cGTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGt > 1:5320401/1‑148 (MQ=255)
gTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAg > 2:5320404/1‑150 (MQ=255)
aCCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCaa > 1:5320413/1‑150 (MQ=255)
ccTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAg > 2:5320420/1‑131 (MQ=255)
cTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTGCAGCCTCTGCGGCCCCCGGACTCTGGCAACACGGGTACGGTCAGGGCAATg > 1:5320426/1‑149 (MQ=255)
tGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCg > 2:5320429/1‑150 (MQ=255)
tAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCg < 2:5319962/147‑1 (MQ=255)
tAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGaa > 1:5320434/1‑150 (MQ=255)
ccGGGAATAAAAACAACGAGCAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCg < 2:5319866/144‑1 (MQ=255)
cGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATa > 1:5320442/1‑148 (MQ=255)
cGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACa < 1:5320053/150‑1 (MQ=255)
gggAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACa > 2:5320445/1‑149 (MQ=255)
ggAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAgt < 1:5320147/150‑1 (MQ=255)
aTAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAgtgt > 1:5320456/1‑149 (MQ=255)
aTAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGtgtg < 1:5319843/150‑1 (MQ=255)
aTAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGtgtg < 1:5320216/150‑1 (MQ=255)
tAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGtgtg > 1:5320461/1‑149 (MQ=255)
tAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGa < 2:5320099/150‑1 (MQ=255)
aaaaCAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGCATACAgtg > 2:5320467/1‑145 (MQ=255)
aaaaCAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACg < 2:5320057/150‑1 (MQ=255)
aaaaCAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACg > 1:5320466/1‑150 (MQ=255)
aacaacGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGa < 1:5319968/150‑1 (MQ=255)
acaacGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGAt > 1:5320476/1‑150 (MQ=255)
acaacGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGAt < 2:5319927/150‑1 (MQ=255)
acaacGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGAt < 1:5320113/150‑1 (MQ=255)
caacGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATg < 2:5319975/150‑1 (MQ=255)
caacGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATg > 2:5320478/1‑150 (MQ=255)
aacGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGc > 1:5320483/1‑150 (MQ=255)
acGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGcc < 1:5319954/150‑1 (MQ=255)
gagaAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGGCAGGGCAATGCGGacaaca > 2:5320489/1‑129 (MQ=255)
agaAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGc < 1:5319685/150‑1 (MQ=255)
aaaGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCg > 1:5320497/1‑149 (MQ=255)
aGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCg > 2:5320503/1‑147 (MQ=255)
aGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGaa < 2:5320140/150‑1 (MQ=255)
aGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGaa < 2:5320084/150‑1 (MQ=255)
aGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGa > 1:5320504/1‑149 (MQ=255)
agaCATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGa < 1:5319872/150‑1 (MQ=255)
gaCATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGAt > 1:5320511/1‑150 (MQ=255)
aTAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGtt < 1:5319795/150‑1 (MQ=255)
tAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGGCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGt > 2:5320519/1‑148 (MQ=255)
aaTGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTAc > 1:5320524/1‑150 (MQ=255)
aTGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTAc > 2:5320528/1‑149 (MQ=255)
aaaaTACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGcccg > 2:5320537/1‑129 (MQ=255)
aaaaTACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCAt > 1:5320536/1‑149 (MQ=255)
aaaaTACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATc < 2:5320155/150‑1 (MQ=255)
aTACGTTCCCTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAAc < 2:5320035/150‑1 (MQ=255)
aCGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTg > 1:5320545/1‑150 (MQ=255)
tCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACg > 2:5320551/1‑150 (MQ=255)
cACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACgg > 1:5320557/1‑150 (MQ=255)
cTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCTGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACggg > 2:5320559/1‑149 (MQ=255)
aaGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGaaa > 1:5320568/1‑150 (MQ=255)
aaGCCGGTTTGTACGGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGGACGGTCAGGGCa > 2:5320569/1‑89 (MQ=255)
aGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGTCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAAt < 2:5320121/150‑1 (MQ=255)
aGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGaaa < 1:5319301/149‑1 (MQ=255)
aGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAAt < 1:5319992/150‑1 (MQ=255)
cGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCg < 1:5319745/150‑1 (MQ=255)
cGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCg > 1:5320582/1‑150 (MQ=255)
cGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCg > 2:5320581/1‑150 (MQ=255)
ggTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCgg < 1:5319922/150‑1 (MQ=255)
gtatGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGa > 2:5320587/4‑150 (MQ=255)
gTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGa < 2:5320180/150‑1 (MQ=255)
gTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGAc > 2:5320595/1‑147 (MQ=255)
tACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAg > 1:5320599/1‑149 (MQ=255)
tACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGa < 1:5320193/150‑1 (MQ=255)
cTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATAAACTGCACGGGAAATCCGGACCAGAAc < 2:5320386/150‑1 (MQ=255)
tGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCACCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGGCCAGAACg > 2:5320604/1‑150 (MQ=255)
gCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACgg < 2:5320239/149‑1 (MQ=255)
cAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACg < 2:5320201/147‑1 (MQ=255)
gTACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTAtt > 1:5320612/1‑149 (MQ=255)
tACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTa > 2:5320612/1‑150 (MQ=255)
tACAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTa < 1:5320031/150‑1 (MQ=255)
cAATGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTAc < 1:5320299/149‑1 (MQ=255)
aTGTTCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAg > 1:5320625/1‑150 (MQ=255)
ttCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCAc > 2:5320628/1‑150 (MQ=255)
ttCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCAc > 1:5320631/1‑150 (MQ=255)
ttCGCCAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCAc < 2:5320287/150‑1 (MQ=255)
ccAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAACGATGTTTACCATCAACTGCACGGGAAATCCGGAACAgc > 1:5320640/1‑128 (MQ=255)
cAGCTTTACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCACTCGGt > 2:5320639/1‑150 (MQ=255)
gCTGTACAGCCTCTCCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCACTCGGttt < 1:5320097/150‑1 (MQ=255)
tttACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCACACGGttttt > 2:5320648/1‑150 (MQ=255)
tACAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCACTCGGTTTTTCt > 1:5320653/1‑150 (MQ=255)
aCAGCCGCTGCGGCCCCCGGACTCTGGCAACAGGGGTACCGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAacac < 2:5319769/138‑1 (MQ=255)
cAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCACTCGGTTTTTCTg < 1:5320070/149‑1 (MQ=255)
cAGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCACTCGGTTTTTCTGa < 1:5320159/150‑1 (MQ=255)
aGCCTCTGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCACTCGGTTTTTCTGAt > 2:5320657/1‑150 (MQ=255)
ctctGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCACTCGGTTTTTCTGATCCt > 1:5320664/1‑150 (MQ=255)
ctctGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCACTCGGTTTTTCTGATCCt < 1:5320245/150‑1 (MQ=255)
tGCGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCACTCGGTTTTTCTGATCCTccc > 2:5320669/1‑148 (MQ=255)
cGGCCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCACTCGGTTTTTCTGATCCTCGCCg > 1:5320678/1‑150 (MQ=255)
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GGCAAACTGATGGGACGGCTGCTGATACCGTCAAACCCTGATAACCGGGAATAAAAACAACGAGAAAGGAGACATAAATGAAAATACGTTCACTAAGCCGGTTTGTACTGGCAAGTACAATGTTCGCCAGCTTTACAGCCTCTGCGGTCCCCGGACTCTGGCAACAGGGGTACGGTCAGGGCAATGCGGAATACAGTGTGACGGATGCCAGCGGAAAGATGTTTACCATCAACTGCACGGGAAATCCGGACCAGAACGGTATTTACCAGCACTCGGTTTTTCTGATCCTCGCCG > NC_000913/2771071‑2771364
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
