Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F13 I1 R1
|
20 |
580.9 |
19806870 |
98.8% |
19569187 |
140.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,819,134 |
T→C |
T5A (ACT→GCT) |
csrA ← |
carbon storage regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,819,134 | 0 | T | C | 99.0%
| 2038.2
/ 4.6
| 495 | T5A (ACT→GCT) | csrA | carbon storage regulator |
| Reads supporting (aligned to +/- strand): ref base T (1/4); new base C (199/290); total (200/295) |
| Fisher's exact test for biased strand distribution p-value = 6.53e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.53e-01 |
Only 100 of 496 total aligned reads displayed.
AGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGTTAAACCTA > NC_000913/2818988‑2819280
|
cTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAAt < 1:5780433/150‑1 (MQ=255)
gATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCa < 1:5780655/149‑1 (MQ=255)
gATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAg > 2:5781008/1‑150 (MQ=255)
tACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGTGTCTCACCAACTCGACGAGCCAGAATCAGCa > 1:5781013/1‑150 (MQ=255)
aCGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCa < 2:5780621/149‑1 (MQ=255)
aCGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCAt > 2:5781016/1‑150 (MQ=255)
tGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCtt > 1:5781023/1‑150 (MQ=255)
gATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTc > 2:5781030/1‑150 (MQ=255)
tctTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCtt > 1:5781035/1‑149 (MQ=255)
ttCACGGTGAGCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGa < 1:5780822/149‑1 (MQ=255)
tCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGa > 2:5781041/1‑148 (MQ=255)
aCGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGa < 1:5780311/150‑1 (MQ=255)
cGGTGAACAGAAACTTCCTTCGGGGTATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGaaa < 2:5780328/147‑1 (MQ=255)
cGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCt < 2:5780556/142‑1 (MQ=255)
tGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTaa < 1:5780498/150‑1 (MQ=255)
aaCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTaaa < 1:5780375/149‑1 (MQ=255)
aaCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTaa > 1:5781048/1‑148 (MQ=255)
aCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAag < 1:5780621/150‑1 (MQ=255)
aGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAAt < 2:5780464/117‑1 (MQ=255)
aGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAagag < 1:5780754/150‑1 (MQ=255)
gAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGt < 1:5780707/150‑1 (MQ=255)
ttccttcGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCgg > 1:5781056/1‑148 (MQ=255)
cttcGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGtctc < 2:5780638/150‑1 (MQ=255)
cttcGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTATCACGGTGACCTCATCCCCAATCATGAGCGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAg > 2:5781060/1‑131 (MQ=255)
cGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGaaa > 2:5781066/1‑127 (MQ=255)
cGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGtctct < 1:5780694/148‑1 (MQ=255)
ggCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTa < 1:5780576/150‑1 (MQ=255)
gCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTAt > 2:5781071/1‑150 (MQ=255)
gCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACGGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAaga < 2:5780578/133‑1 (MQ=255)
cATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATc > 1:5781077/1‑150 (MQ=255)
aTTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATcc > 1:5781083/1‑150 (MQ=255)
tACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCgg > 2:5781087/1‑150 (MQ=255)
aCGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCgg < 2:5780629/149‑1 (MQ=255)
cGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGc < 2:5780724/149‑1 (MQ=255)
cGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCa > 1:5781091/1‑150 (MQ=255)
cAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCAtt < 2:5780857/149‑1 (MQ=255)
aaTACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTa < 2:5780674/149‑1 (MQ=255)
aaTACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTAt > 1:5781099/1‑150 (MQ=255)
aTACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATc < 1:5780767/150‑1 (MQ=255)
cGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCcat < 2:5780537/150‑1 (MQ=255)
gTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATcc > 2:5781106/1‑147 (MQ=255)
gTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCcat > 1:5781106/1‑149 (MQ=255)
ccTGGTTGCCCTTTACCCCTAAAACTGTCTCGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCcatcat > 2:5781113/1‑149 (MQ=255)
cTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGGATCCCGGCATTa < 1:5780548/140‑1 (MQ=255)
ggTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATaa > 1:5781117/1‑150 (MQ=255)
ttGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACg < 2:5780830/150‑1 (MQ=255)
gCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGc > 1:5781123/1‑149 (MQ=255)
gCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGc < 1:5780646/149‑1 (MQ=255)
tACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAag < 2:5780897/100‑1 (MQ=255)
tACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGCGTCGGGTCTCTCTGTATCCCTGCATTATCCATCATATAAcc > 2:5781130/1‑141 (MQ=255)
tACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAg > 1:5781131/1‑150 (MQ=255)
aCCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAg < 1:5780337/149‑1 (MQ=255)
cccTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTaa < 1:5780603/150‑1 (MQ=255)
cccTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTaa < 1:5781043/150‑1 (MQ=255)
ccTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAg < 1:5780879/150‑1 (MQ=255)
ccTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAg > 1:5781139/1‑150 (MQ=255)
cTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGc < 2:5780747/150‑1 (MQ=255)
aaaaCTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCaa > 2:5781142/1‑150 (MQ=255)
aaaCTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCaa < 1:5780855/149‑1 (MQ=255)
aaaCTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAAt < 1:5780389/150‑1 (MQ=255)
aaCTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAAt > 1:5781148/1‑149 (MQ=255)
tGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTTAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAg < 2:5780368/142‑1 (MQ=255)
gTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACa > 2:5781152/1‑149 (MQ=255)
tCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACaaa > 1:5781159/1‑150 (MQ=255)
tCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACaaa < 1:5780398/150‑1 (MQ=255)
cGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAaca > 2:5781164/1‑149 (MQ=255)
tGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTTCTcc < 2:5780521/65‑1 (MQ=255)
tGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACAt > 1:5781169/1‑149 (MQ=255)
cTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACAt < 2:5780709/150‑1 (MQ=255)
aTCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATc < 1:5780734/148‑1 (MQ=255)
aTCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATc < 1:5780843/148‑1 (MQ=255)
aTCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCt < 1:5780744/149‑1 (MQ=255)
aTCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCt > 1:5781174/1‑149 (MQ=255)
tctccAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCatat < 2:5780795/107‑1 (MQ=255)
tCCCCAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCt < 1:5780477/148‑1 (MQ=255)
cccAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAg > 2:5781177/1‑149 (MQ=255)
cccAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAg > 1:5781181/1‑149 (MQ=255)
cccAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGc < 2:5780661/150‑1 (MQ=255)
ccAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCa < 1:5780560/150‑1 (MQ=255)
ccAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCa < 1:5780247/150‑1 (MQ=255)
ccAATCAGGAGGGTCTCACCAACTCAACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCaaa < 2:5780505/116‑1 (MQ=255)
cAATCATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAg < 1:5780462/150‑1 (MQ=255)
aTCATGAGGGTCTCACCAGCTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATAGAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTc < 1:5780588/150‑1 (MQ=255)
cATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCtt < 2:5780607/51‑1 (MQ=255)
cATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCa < 1:5780674/145‑1 (MQ=255)
cATGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCAt > 2:5781188/1‑150 (MQ=255)
aTGAGGGTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATg > 1:5781192/1‑150 (MQ=255)
ggTCTCACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCAtt < 1:5780923/150‑1 (MQ=255)
ctcAACAACTAGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATAAAAAAAAAAAAAAAAGTAAGc < 2:5780432/110‑1 (MQ=255)
tcACCAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACAt > 2:5781196/1‑150 (MQ=255)
ccAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCt < 2:5780954/150‑1 (MQ=255)
ccAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCt < 1:5780778/150‑1 (MQ=255)
cAACTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTg > 1:5781203/1‑150 (MQ=255)
aCTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGc < 2:5780781/128‑1 (MQ=255)
aCTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGtt < 1:5780811/150‑1 (MQ=255)
aCTCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGt > 2:5781204/1‑149 (MQ=255)
tCGACGAGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATg < 2:5780598/105‑1 (MQ=255)
cgaGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGTTAAAcc > 1:5781214/1‑149 (MQ=255)
gaGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGTTAAACCt > 1:5781219/1‑149 (MQ=255)
gaGCCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGTTAAACCTa < 1:5780526/150‑1 (MQ=255)
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AGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGTTAAACCTA > NC_000913/2818988‑2819280
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
