Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F13 I1 R1 18 2625.4 86379875 99.4% 85861595 141.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,190,692 Δ1 bp coding (61/1065 nt) yqiI → putative fimbrial protein YqiI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,190,6900G.98.4% 15112.9 / 213.6 2685coding (59/1065 nt)yqiIputative fimbrial protein YqiI
Reads supporting (aligned to +/- strand):  ref base G (19/24);  new base . (1360/1281);  total (1379/1306)
Fisher's exact test for biased strand distribution p-value = 3.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 2819 total aligned reads displayed.

AATGACTTTGGTGGATTAAGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCATGGGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATGAATGTTTTCTGTAATAAT  >  NC_000913/3190541‑3190835
                                                                                                                                                     |                                                                                                                                                 
aaTGACTTTGGTGGATTAAGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCATg                                                                                                                                                   <  2:28566946/150‑1 (MQ=255)
   gACTTTGGTGGATTAAGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGATTTAGTTCATTACCTGCATggc                                                                                                                                                 >  1:28570494/1‑148 (MQ=255)
     cTTTGGTGGATTAAGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCATggcaat                                                                                                                                              <  1:28569015/150‑5 (MQ=255)
          gtggATTAAGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACt                                                                                                                                        <  1:28567480/150‑1 (MQ=255)
           tggATTAAGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGGTTTAGTTCATTACCTGCAT‑GGCAATGGACTg                                                                                                                                       >  1:28570556/1‑150 (MQ=255)
              aTTAAGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTAATTGCATggcaat                                                                                                                                              >  2:28570587/1‑137 (MQ=255)
                 aaGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATg                                                                                                                                  <  1:28566638/149‑1 (MQ=255)
                  aGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTGATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGa                                                                                                                                          <  2:28568262/140‑1 (MQ=255)
                      tttATGAAATAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGaa                                                                                                                             >  1:28570677/1‑149 (MQ=255)
                      tttATGAAATAAACTGCACTGTAGTAAATAATATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGaa                                                                                                                             <  1:28569426/149‑1 (MQ=255)
                       ttATGAAATAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAAc                                                                                                                            <  1:28568823/149‑1 (MQ=255)
                            aaaTAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAg                                                                                                                      >  1:28570733/1‑150 (MQ=255)
                              aTAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCATGGGCaa                                                                                                                                              >  2:28570752/1‑125 (MQ=255)
                               tAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTg                                                                                                                   <  1:28568615/150‑1 (MQ=255)
                                 aaCTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTgg                                                                                                                  <  1:28568158/149‑1 (MQ=255)
                                 aaCTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTgg                                                                                                                  >  1:28570796/1‑149 (MQ=255)
                                      cccTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATa                                                                                                             <  1:28567875/149‑1 (MQ=255)
                                      cccTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATAc                                                                                                            >  1:28570854/1‑150 (MQ=255)
                                      cccTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAACATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATa                                                                                                             <  2:28568711/149‑1 (MQ=255)
                                       ccTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAAt                                                                                                              <  2:28567590/147‑1 (MQ=255)
                                       ccTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATAcc                                                                                                           >  2:28570864/1‑150 (MQ=255)
                                         tGTAGTAAATATCATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTAt                                                                                                                                   <  2:28566178/124‑1 (MQ=255)
                                           tagtaAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTg                                                                                                       >  1:28570908/1‑150 (MQ=255)
                                                aaTAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCAtt                                                                                                  >  1:28570955/1‑150 (MQ=255)
                                                aaTAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCAtt                                                                                                  <  1:28568026/150‑1 (MQ=255)
                                                 aTAACATTTGTAATATTTCTGCAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTg                                                                                                 <  1:28564410/150‑1 (MQ=255)
                                                    aCATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGaac                                                                                                               >  2:28571009/1‑132 (MQ=255)
                                                         tGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTa                                                                                         >  1:28571058/1‑150 (MQ=255)
                                                              tatTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGt                                                                                                      >  2:28571124/1‑132 (MQ=255)
                                                              tatTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTAcc                                                                                       >  1:28571119/1‑147 (MQ=255)
                                                                tttCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGaa                                                                                  <  2:28569130/150‑1 (MQ=255)
                                                                 ttCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGaa                                                                                  <  2:28568531/149‑1 (MQ=255)
                                                                  tCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAAtc                                                                                >  1:28571169/1‑150 (MQ=255)
                                                                     gTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGc                                                                                                                                      >  2:28571202/1‑93 (MQ=255)
                                                                      tAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATctct                                                                             <  2:28568899/149‑1 (MQ=255)
                                                                      tAGCCAACCGAGATCAATAATATGCGCTACTCGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAAtct                                                                               <  1:28569126/147‑1 (MQ=255)
                                                                       aGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTAt                                                                           >  1:28571219/1‑150 (MQ=255)
                                                                           aaCCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCATGGGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATccc                                                                        <  1:28568937/150‑1 (MQ=255)
                                                                            aCCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATccc                                                                        >  1:28571275/1‑148 (MQ=255)
                                                                             ccGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAg                                                                     <  2:28568345/150‑1 (MQ=255)
                                                                              cGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGc                                                                    >  2:28571293/1‑150 (MQ=255)
                                                                                agaTCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGa                                                                  >  1:28571330/1‑150 (MQ=255)
                                                                                   tCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATg                                                                                                                                            <  2:28567221/73‑1 (MQ=255)
                                                                                   tCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGAt                                                                 >  2:28571366/1‑148 (MQ=255)
                                                                                   tCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATg                                                                <  1:28567690/149‑1 (MQ=255)
                                                                                     aataatATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGt                                                              >  1:28571385/1‑149 (MQ=255)
                                                                                     aataatATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGt                                                              <  2:28570209/149‑1 (MQ=255)
                                                                                      ataataTGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTa                                                             <  1:28568703/149‑1 (MQ=255)
                                                                                       taataTGCGCTACTTGTTAATTGTTATTACTTTTTTTTTTTTTTTTTGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTTTCATTGGTTACGTa                                                                                         >  2:28571418/1‑120 (MQ=255)
                                                                                         atatGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTaaaa                                                          <  2:28568436/149‑1 (MQ=255)
                                                                                          tatGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCACAGCGATGGTaaaaaa                                                        <  1:28570374/150‑1 (MQ=255)
                                                                                           atGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAg                                                       >  1:28571454/1‑150 (MQ=255)
                                                                                             gcgcTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAAt                                                                                                              >  2:28571479/1‑93 (MQ=255)
                                                                                             gcgcTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCa                                                                                      <  2:28569236/117‑1 (MQ=255)
                                                                                               ggtACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGa                                                   <  2:28569021/148‑1 (MQ=255)
                                                                                               gcTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATGTCTATCCCCAGCGATGGTAAAAAAGGTGa                                                   <  2:28568618/150‑1 (MQ=255)
                                                                                               gcTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGa                                                   <  1:28569334/150‑1 (MQ=255)
                                                                                                 tACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGAt                                                  >  1:28571517/1‑149 (MQ=255)
                                                                                                  aCTTGTTAATTGTTATTACTTTTTTTTTTTTTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTTGTTACGTACCAAGAATCTCTATctc                                                                        >  2:28571540/1‑124 (MQ=255)
                                                                                                   cTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACGTGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATa                                                 <  1:28570999/148‑1 (MQ=255)
                                                                                                    ttGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATaaaa                                              >  1:28571574/1‑150 (MQ=255)
                                                                                                    ttGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATa                                                 <  2:28567474/147‑1 (MQ=255)
                                                                                                     ttttAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGAt                                                                 <  1:28568382/128‑1 (MQ=255)
                                                                                                     tGTTAATTGTTATTACTTTTTTTTTGTTTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATcccc                                                                       >  2:28571594/1‑124 (MQ=255)
                                                                                                      gTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATgg                                                               <  1:28569232/131‑1 (MQ=255)
                                                                                                        tAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTaaaaaa                                                        <  2:28567939/136‑1 (MQ=255)
                                                                                                         aaTTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTgg                                         >  1:28571637/1‑150 (MQ=255)
                                                                                                          aTTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTgg                                         <  2:28568113/149‑1 (MQ=255)
                                                                                                          aTTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTACAT‑GGCAATGGACTGCTATTCTGAAc                                                                                                                            >  2:28571658/1‑66 (MQ=255)
                                                                                                            tGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCa                                       >  1:28571690/1‑149 (MQ=255)
                                                                                                             gTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCaa                                      <  1:28567189/149‑1 (MQ=255)
                                                                                                                attaCTTTTTTTATGGGTTTTATTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGc                                   <  2:28569924/149‑1 (MQ=255)
                                                                                                                attaCTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAg                                    >  1:28571734/1‑148 (MQ=255)
                                                                                                                attaCTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAg                                    >  2:28571733/1‑148 (MQ=255)
                                                                                                                 ttaCTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAg                                 <  2:28569569/150‑1 (MQ=255)
                                                                                                                    cTTTTTTTATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTg                               >  1:28571786/1‑149 (MQ=255)
                                                                                                                     tttttttATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGa                              >  2:28571798/1‑149 (MQ=255)
                                                                                                                        ttttATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAatat                          >  1:28571849/1‑150 (MQ=255)
                                                                                                                        ttttATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAatat                          >  2:28571843/1‑150 (MQ=255)
                                                                                                                        ttttATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAata                           <  2:28569709/149‑1 (MQ=255)
                                                                                                                        ctttATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAata                           <  1:28568492/148‑1 (MQ=255)
                                                                                                                         tttATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAatat                          <  1:28569569/149‑1 (MQ=255)
                                                                                                                         tttATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAatat                          <  1:28570624/149‑1 (MQ=255)
                                                                                                                         tttATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAatat                          <  1:28568260/149‑1 (MQ=255)
                                                                                                                           tATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATAttt                        >  2:28571903/1‑149 (MQ=255)
                                                                                                                           tATGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATAttt                        >  1:28571905/1‑149 (MQ=255)
                                                                                                                             tGGGTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTAt                     >  2:28571946/1‑150 (MQ=255)
                                                                                                                               ggTTTTAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATg                    >  1:28571970/1‑149 (MQ=255)
                                                                                                                                 ttttAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATGAAt                 <  2:28568809/150‑1 (MQ=255)
                                                                                                                                  tttAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATGAATg                >  1:28572020/1‑150 (MQ=255)
                                                                                                                                  tttAGTTCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATGAATg                >  2:28572014/1‑150 (MQ=255)
                                                                                                                                       ttCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATGAATGTTTTc           >  1:28572069/1‑150 (MQ=255)
                                                                                                                                        tCATTACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATGAATGTTTTCt          >  2:28572075/1‑150 (MQ=255)
                                                                                                                                           ttACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATGAATGTTTTCTGt        <  2:28569397/149‑1 (MQ=255)
                                                                                                                                            tACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATGAATGTTTTCTGtaa      >  1:28572131/1‑150 (MQ=255)
                                                                                                                                            tACCTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATGAATGTTTTCTGtaa      >  2:28572131/1‑150 (MQ=255)
                                                                                                                                              ccTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATGAATGTTTTCTGtaat     <  1:28569770/149‑1 (MQ=255)
                                                                                                                                               cTGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATGAATGTTTTCTGtaataa   <  1:28570001/150‑1 (MQ=255)
                                                                                                                                                tGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATg                    <  2:28567757/132‑1 (MQ=255)
                                                                                                                                                tGCAT‑GGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATGAATGTTTTCTGTaataat  >  1:28572185/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                 
AATGACTTTGGTGGATTAAGTTTTTATGAAATAAACTGCCCTGTAGTAAATAACATTTGTAATATTTCTGTAGCCAACCGAGATCAATAATATGCGCTACTTGTTAATTGTTATTACTTTTTTTATGGGTTTTAGTTCATTACCTGCATGGGCAATGGACTGCTATGCTGAACATGAAGGTGGAAATACCGTTGTCATTGGTTACGTACCAAGAATCTCTATCCCCAGCGATGGTAAAAAAGGTGATAAAATCTGGCAAAGCAGTGAATATTTTATGAATGTTTTCTGTAATAAT  >  NC_000913/3190541‑3190835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A