Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F13 I1 R1
|
18 |
2625.4 |
86379875 |
99.4% |
85861595 |
141.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,327,269 |
T→C |
T132T (ACA→ACG) |
rlmE ← |
23S rRNA 2'‑O‑ribose U2552 methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,327,269 | 0 | T | C | 98.9%
| 11635.8
/ 46.1
| 2797 | T132T (ACA→ACG) | rlmE | 23S rRNA 2'‑O‑ribose U2552 methyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (15/15); new base C (1490/1276); total (1506/1291) |
| Fisher's exact test for biased strand distribution p-value = 7.15e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 2807 total aligned reads displayed.
CAGGGAGCGAATTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATC > NC_000913/3327122‑3327418
|
aGGGAGCGAATTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGtt > 1:29916532/1‑150 (MQ=255)
gggAGCGAATTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTc < 2:29913900/150‑1 (MQ=255)
ggAGCGAATTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTcc < 1:29914160/150‑1 (MQ=255)
gAATTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCa > 1:29916589/1‑150 (MQ=255)
gAATTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATCGCACGGGGGATATCCACCGCCGGCGTTCCCCTCa > 2:29916582/1‑150 (MQ=255)
aaTTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCAt < 1:29915195/150‑1 (MQ=255)
ttCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGtt > 1:29916648/1‑150 (MQ=255)
tCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGttt > 2:29916663/1‑150 (MQ=255)
cccTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGttt < 1:29915345/149‑1 (MQ=255)
cccTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGttt < 1:29914895/149‑1 (MQ=255)
ccTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTgg < 1:29913918/150‑1 (MQ=255)
cTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTc > 1:29916697/1‑136 (MQ=255)
aTACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGc > 2:29916752/1‑134 (MQ=255)
aTACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCa > 1:29916750/1‑149 (MQ=255)
cTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCatat < 1:29914279/149‑1 (MQ=255)
tCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATc < 1:29910921/149‑1 (MQ=255)
cATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCg > 1:29916807/1‑149 (MQ=255)
aTCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGa < 1:29914466/150‑1 (MQ=255)
cGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACACCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGtt > 2:29916830/1‑122 (MQ=255)
aaaCCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGAc < 1:29914010/147‑1 (MQ=255)
aaaCCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACAt > 1:29916858/1‑149 (MQ=255)
aCCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGa > 2:29916880/1‑149 (MQ=255)
ttCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAAc > 1:29916916/1‑150 (MQ=255)
cGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAAcc < 1:29913150/149‑1 (MQ=255)
cGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCt > 2:29916939/1‑150 (MQ=255)
gCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTg < 1:29913601/150‑1 (MQ=255)
gCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACAGCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCAt < 2:29913444/120‑1 (MQ=255)
cccTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTg > 1:29916964/1‑149 (MQ=255)
cTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGAc < 1:29913392/150‑1 (MQ=255)
cTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCCGCGTTCCGCTCATGtg > 2:29916996/1‑119 (MQ=255)
gAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACttt < 1:29916073/150‑1 (MQ=255)
aaCACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTg > 1:29917036/1‑150 (MQ=255)
acacCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCCCTCATGTTTGCTGCCATATCGGACATGACAAcc > 2:29917058/1‑140 (MQ=255)
cacCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCt < 2:29912412/150‑1 (MQ=255)
acCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTg > 1:29917083/1‑150 (MQ=255)
tCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGc > 2:29917118/1‑150 (MQ=255)
cTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCaa > 1:29917143/1‑150 (MQ=255)
aaaaCTGCCCCCTGGCGCTAATACATCACGACACAGTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCgg < 2:29914110/116‑1 (MQ=255)
aaaaCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAAcgc < 2:29914432/149‑1 (MQ=255)
aaaCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACgcgc > 2:29917177/1‑150 (MQ=255)
aaCTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCt > 1:29917196/1‑150 (MQ=255)
gCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTc > 1:29917247/1‑147 (MQ=255)
gCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCcag > 2:29917243/1‑150 (MQ=255)
cTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTg > 2:29917291/1‑150 (MQ=255)
tGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGc > 1:29917309/1‑150 (MQ=255)
gcTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACGTGGACTTTGCTGTCGc > 1:29917365/1‑127 (MQ=255)
gcTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCttt > 2:29917349/1‑149 (MQ=255)
aaTACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTtcat > 1:29917412/1‑149 (MQ=255)
aTACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTtcatca > 2:29917421/1‑150 (MQ=255)
tACATCACGACTCATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCAc < 2:29914200/150‑1 (MQ=255)
tCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGTAGTGCTTTCATCACCAGt > 2:29917478/1‑150 (MQ=255)
tCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGt > 1:29917475/1‑150 (MQ=255)
tCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGt < 1:29914648/150‑1 (MQ=255)
gACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTtcat > 2:29917525/1‑150 (MQ=255)
acacATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTtcat > 1:29917537/1‑149 (MQ=255)
acaTTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTtcatca < 1:29914389/149‑1 (MQ=255)
aTTTCTAGCGCCAGTTCCACCAGATAGATGGCACGGGGGATATCCACCGCCGGCGTTCCGCGCGTGGGTGGTGcc > 2:29917584/1‑75 (MQ=255)
tttCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGa > 1:29917593/1‑149 (MQ=255)
tCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATACCGGACATGACAACCTGGACTTTGCTGTCGCCa < 2:29914015/108‑1 (MQ=255)
cTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCGCCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGAc < 2:29915421/94‑1 (MQ=255)
tAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTc > 2:29917647/1‑114 (MQ=255)
tAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATc > 1:29917640/1‑150 (MQ=255)
gcgcCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAAt < 1:29915769/147‑1 (MQ=255)
gcgcCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAAt < 1:29914551/147‑1 (MQ=255)
gcgcCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCg < 2:29915258/149‑1 (MQ=255)
cgcCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATc < 2:29914281/147‑1 (MQ=255)
gcCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCcagcag > 2:29917697/1‑116 (MQ=255)
ccAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACg < 2:29913697/139‑1 (MQ=255)
ccAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCt > 1:29917705/1‑150 (MQ=255)
ccaccaGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTgaaga > 1:29917758/1‑149 (MQ=255)
ccaccaGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGCCCTTTCATCACCAGTTCACCACGAAAATCg > 2:29917761/1‑140 (MQ=255)
caccaGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTgaagaa < 1:29912809/149‑1 (MQ=255)
caGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGt < 1:29915598/149‑1 (MQ=255)
caGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTc > 1:29917804/1‑150 (MQ=255)
aGATACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTc > 2:29917826/1‑149 (MQ=255)
tACATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCa < 2:29914850/115‑1 (MQ=255)
aCATGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGaaaa < 1:29917862/128‑1 (MQ=255)
aTGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACAcc > 2:29917875/1‑149 (MQ=255)
aTGGCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCa < 1:29914746/150‑1 (MQ=255)
gCACGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAAc < 2:29916268/149‑1 (MQ=255)
cACGGGTGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTtca < 2:29913034/102‑1 (MQ=255)
aCGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTc < 2:29915571/138‑1 (MQ=255)
aCGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCaa > 2:29917932/1‑146 (MQ=255)
aCGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGa > 1:29917923/1‑149 (MQ=255)
aCGGGGGATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGAt < 1:29915461/150‑1 (MQ=255)
gggggATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGAt < 1:29915087/148‑1 (MQ=255)
ggggATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAg > 1:29917964/1‑149 (MQ=255)
gggATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGa < 2:29915827/150‑1 (MQ=255)
gggATATCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGa < 1:29914816/150‑1 (MQ=255)
atatCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATc > 2:29917990/1‑149 (MQ=255)
tatCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCa < 1:29913758/150‑1 (MQ=255)
tCCACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATa < 1:29914985/150‑1 (MQ=255)
ccACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGaaa < 2:29914575/109‑1 (MQ=255)
ccACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATc < 2:29914694/112‑1 (MQ=255)
ccACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAg > 1:29918034/1‑150 (MQ=255)
cACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCa > 2:29918047/1‑95 (MQ=255)
cACCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATa < 2:29914969/148‑1 (MQ=255)
aCCGCCGGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCAc < 2:29914354/103‑1 (MQ=255)
aCCGCCGGCGTTCCGCTCATGTTTGGTGCCATAGCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTgaaga < 2:29915107/120‑1 (MQ=255)
ccgGCGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTaa > 1:29918088/1‑148 (MQ=255)
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CAGGGAGCGAATTTCCCTTAGATACTCATCGAAACCTTCGCCCTGGAACACCTTCACTACAAAACTGCCACCTGGCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATC > NC_000913/3327122‑3327418
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
