Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F13 I1 R1 18 2625.4 86379875 99.4% 85861595 141.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,072,114 C→T A180T (GCC→ACC)  yihT ← 6‑deoxy‑6‑sulfofructose‑1‑phosphate aldolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,072,1140CT98.7% 12500.6 / 64.7 2858A180T (GCC→ACC) yihT6‑deoxy‑6‑sulfofructose‑1‑phosphate aldolase
Reads supporting (aligned to +/- strand):  ref base C (19/18);  new base T (1493/1324);  total (1516/1342)
Fisher's exact test for biased strand distribution p-value = 8.70e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.37e-01

Only 100 of 2917 total aligned reads displayed.

CACCGGAAGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGCATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGACGTTGCTGCGCATCTTCATCAC  >  NC_000913/4071967‑4072260
                                                                                                                                                   |                                                                                                                                                  
 acCGGAAGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATc                                                                                                                                                 >  1:37401307/1‑150 (MQ=255)
  ccGGAAGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCg                                                                                                                                                <  1:37395783/150‑1 (MQ=255)
  ccGGAAGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGCATCg                                                                                                                                                <  1:37398315/150‑1 (MQ=255)
   cGGAAGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCga                                                                                                                                               >  2:37401331/1‑150 (MQ=255)
    ggAAGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCgat                                                                                                                                              <  1:37398889/150‑1 (MQ=255)
      aaGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCgatga                                                                                                                                            >  1:37401375/1‑150 (MQ=255)
      aaGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCgatga                                                                                                                                            <  1:37400375/150‑1 (MQ=255)
      aaGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCgatga                                                                                                                                            <  1:37399259/150‑1 (MQ=255)
       agagagGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCgatgat                                                                                                                                           <  2:37398193/150‑1 (MQ=255)
         agagGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCg                                                                                                                                         >  2:37401408/1‑150 (MQ=255)
           agGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCt                                                                                                                                       >  1:37401431/1‑150 (MQ=255)
           agGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCt                                                                                                                                       <  1:37399951/150‑1 (MQ=255)
            ggATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCtt                                                                                                                                      <  1:37399343/150‑1 (MQ=255)
                cACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGt                                                                                                                                    >  1:37401485/1‑148 (MQ=255)
                 aCCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTcg                                                                                                                                 >  2:37401486/1‑150 (MQ=255)
                   ccATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATc                                                                                                                                          <  2:37397894/139‑1 (MQ=255)
                     aTGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGCTCGCTTGTTcgc                                                                                                                                >  2:37401550/1‑147 (MQ=255)
                     aTGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGAt                                                                                                                             <  1:37398456/150‑1 (MQ=255)
                     aTGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGAt                                                                                                                             >  1:37401544/1‑150 (MQ=255)
                         cATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGaa                                                                                                                         <  1:37398617/150‑1 (MQ=255)
                          atatTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAAt                                                                                                                        >  2:37401602/1‑150 (MQ=255)
                          atatTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAAt                                                                                                                        >  1:37401601/1‑150 (MQ=255)
                            atTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAAt                                                                                                                        <  2:37398421/148‑1 (MQ=255)
                              tGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCg                                                                                                                                                >  2:37401660/1‑122 (MQ=255)
                              tGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTa                                                                                                                     <  2:37396818/149‑1 (MQ=255)
                               gATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATc                                                                                                                   >  1:37401668/1‑150 (MQ=255)
                                      tCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCacga                                                                                                            >  1:37401723/1‑150 (MQ=255)
                                       cATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCacga                                                                                                            >  2:37401737/1‑149 (MQ=255)
                                        aTTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCacgacg                                                                                                          <  1:37397605/150‑1 (MQ=255)
                                         ttCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGAcgc                                                                                                         <  1:37397874/150‑1 (MQ=255)
                                          tCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGAcgcg                                                                                                        >  1:37401779/1‑150 (MQ=255)
                                           cAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGAcgcg                                                                                                        >  2:37401790/1‑149 (MQ=255)
                                             aaCGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTCCCATAAAGCGGCATTTCACCTTTGTAGAGGTCAGCGCCCCTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCacga                                                                                                            <  2:37400031/142‑1 (MQ=255)
                                              aCGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTgg                                                                                                    <  2:37399017/150‑1 (MQ=255)
                                               cGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTgg                                                                                                    >  1:37401840/1‑149 (MQ=255)
                                                gTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGc                                                                                                  >  2:37401853/1‑150 (MQ=255)
                                                    tgAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGgac                                                                                              >  1:37401901/1‑150 (MQ=255)
                                                    tgAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGgac                                                                                              <  1:37398742/150‑1 (MQ=255)
                                                     gAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCg                                                                                                 >  2:37401906/1‑146 (MQ=255)
                                                        gCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACt                                                                                          <  2:37398888/150‑1 (MQ=255)
                                                        gCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACt                                                                                          <  1:37399853/150‑1 (MQ=255)
                                                        gCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACt                                                                                          <  2:37399900/150‑1 (MQ=255)
                                                           caGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGGCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATc                                                                                                                            >  2:37401954/1‑113 (MQ=255)
                                                             gagaAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCt                                                                                      >  1:37401970/1‑149 (MQ=255)
                                                             gagaAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTc                                                                                     <  2:37400135/150‑1 (MQ=255)
                                                              agaAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCa                                                                                    <  2:37399206/150‑1 (MQ=255)
                                                                  gCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAatga                                                                                <  1:37399441/150‑1 (MQ=255)
                                                                  gCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTCGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAat                                                                                  >  2:37402019/1‑148 (MQ=255)
                                                                   tgctTGTTGCGGACGTTTGCCATAAAGCGGGATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCCAATTTATCGCCACGACGCGGTGGGCGgacgac                                                                                           <  2:37398761/136‑1 (MQ=255)
                                                                   ctctTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAatgat                                                                               >  1:37402031/1‑150 (MQ=255)
                                                                      ttgttgCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCg                                                                                                 <  1:37399767/129‑1 (MQ=255)
                                                                       tgttgCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCt                                                                                      >  1:37402080/1‑139 (MQ=255)
                                                                        gttgCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGAcgc                                                                                                         <  2:37397582/119‑1 (MQ=255)
                                                                        gttgCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCtt                                                                           <  1:37400239/149‑1 (MQ=255)
                                                                        gttgCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTa                                                                          >  2:37402086/1‑150 (MQ=255)
                                                                         ttgCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTa                                                                          <  1:37398151/149‑1 (MQ=255)
                                                                             ggACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGa                                                                     >  1:37402141/1‑150 (MQ=255)
                                                                              gACCTTTGCCATAAAGCGGNATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGAc                                                                    >  2:37402151/1‑150 (MQ=255)
                                                                              gACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGAc                                                                    <  1:37399027/150‑1 (MQ=255)
                                                                               aCCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGAcc                                                                   <  1:37400122/150‑1 (MQ=255)
                                                                                 cTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCgt                                                                 >  1:37402192/1‑150 (MQ=255)
                                                                                     gCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCa                                                                       >  2:37402224/1‑140 (MQ=255)
                                                                                      ccATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGa                                                             >  1:37402237/1‑149 (MQ=255)
                                                                                         tAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTgg                                                         >  2:37402275/1‑150 (MQ=255)
                                                                                          aaaGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTg                                                          >  1:37402297/1‑148 (MQ=255)
                                                                                           aaGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGca                                                       <  1:37399146/150‑1 (MQ=255)
                                                                                              cGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAg                                                    >  2:37402335/1‑150 (MQ=255)
                                                                                                gCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGtt                                                  >  1:37402363/1‑150 (MQ=255)
                                                                                                gCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGtt                                                  <  2:37400455/150‑1 (MQ=255)
                                                                                                   tttCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGt                                               >  1:37402404/1‑150 (MQ=255)
                                                                                                    ttCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGtt                                              >  2:37402412/1‑150 (MQ=255)
                                                                                                       aaCTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGaa                                           >  1:37402453/1‑150 (MQ=255)
                                                                                                         cTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAAct                                         >  2:37402479/1‑150 (MQ=255)
                                                                                                           ttGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAActct                                       >  1:37402503/1‑150 (MQ=255)
                                                                                                              tAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAggg                                                          >  2:37402543/1‑126 (MQ=255)
                                                                                                                gagGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCa                                   <  2:37399803/149‑1 (MQ=255)
                                                                                                                gagGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCAc                                  >  1:37402569/1‑150 (MQ=255)
                                                                                                                  ggTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTgg                                                                                        >  2:37402588/1‑94 (MQ=255)
                                                                                                                   gTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCat                               <  1:37399517/150‑1 (MQ=255)
                                                                                                                   gTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCa                                <  1:37400544/149‑1 (MQ=255)
                                                                                                                    tCAGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCata                              <  2:37400929/150‑1 (MQ=255)
                                                                                                                      aGCGCCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGGTGAACTCTTTCACCATATc                            >  1:37402633/1‑150 (MQ=255)
                                                                                                                        cgcCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATc                            >  2:37402649/1‑148 (MQ=255)
                                                                                                                        cgcCACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATc                            <  2:37399685/148‑1 (MQ=255)
                                                                                                                           cACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGAc                       <  1:37399654/150‑1 (MQ=255)
                                                                                                                           cACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGAc                       >  1:37402691/1‑150 (MQ=255)
                                                                                                                           cACTGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGAc                       <  2:37399601/150‑1 (MQ=255)
                                                                                                                              tGTCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGACGtt                    >  2:37402714/1‑150 (MQ=255)
                                                                                                                                tCGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGACGTtgc                  >  1:37402738/1‑150 (MQ=255)
                                                                                                                                 cGCCCAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGACGTtgc                  <  2:37400694/149‑1 (MQ=255)
                                                                                                                                   cccAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGACGt                     >  2:37402776/1‑144 (MQ=255)
                                                                                                                                    ccAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGtt                                              <  2:37398611/118‑1 (MQ=255)
                                                                                                                                     cAGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGACGTTGCTgcg              >  1:37402800/1‑149 (MQ=255)
                                                                                                                                      aGCTCTTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAg                         <  2:37399118/137‑1 (MQ=255)
                                                                                                                                         tctTTGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGACGTTGCTGCGCATCt         >  2:37402837/1‑150 (MQ=255)
                                                                                                                                           tttGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCa                          <  2:37400292/131‑1 (MQ=255)
                                                                                                                                           tttGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGACGTTGCTGCGCATCtt        >  1:37402857/1‑149 (MQ=255)
                                                                                                                                            ttGGCGGTATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAatg                                                                                 <  2:37399517/75‑1 (MQ=255)
                                                                                                                                               gcgggATCGATGGTCGCTTGGTCGCGATCGAATTTAGCGCCACGACGCCGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGACGTTGCTGCGCATCTtc       <  1:37400811/146‑1 (MQ=255)
                                                                                                                                                cggtATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGACGTTGCTGCGCATCTTCATCAc  <  2:37399363/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
CACCGGAAGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGCATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGACGTTGCTGCGCATCTTCATCAC  >  NC_000913/4071967‑4072260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A