Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F13 I1 R1
|
18 |
2625.4 |
86379875 |
99.4% |
85861595 |
141.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,447,854 |
A→G |
D1248G (GAC→GGC) |
tamB → |
translocation and assembly module subunit TamB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,447,854 | 0 | A | G | 99.1%
| 11700.3
/ 37.3
| 2819 | D1248G (GAC→GGC) | tamB | translocation and assembly module subunit TamB |
| Reads supporting (aligned to +/- strand): ref base A (11/15); new base G (1382/1410); total (1394/1425) |
| Fisher's exact test for biased strand distribution p-value = 5.56e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 2821 total aligned reads displayed.
GCGACTCCTCCCAGGTAGTGGTCAGCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGACCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTACCAGTTGTATA > NC_000913/4447707‑4448002
|
cGACTCCTCCCAGGTAGTGGTCAGCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCa < 1:41142612/150‑1 (MQ=255)
gACTCCTCCCAGGTAGTGGTCAGCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAg > 1:41145176/1‑150 (MQ=255)
cctccCAGGTAGTGGTCAGCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCa > 2:41145206/1‑149 (MQ=255)
ctccCAGGTAGTGGTCAGCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCAc < 1:41139571/149‑1 (MQ=255)
ccAGGTAGTGGTCAGCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGa > 1:41145237/1‑150 (MQ=255)
cAGGTAGTGGTCAGCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGAt < 1:41141337/150‑1 (MQ=255)
aGGTAGTGGTCAGCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGAtt < 2:41143531/150‑1 (MQ=255)
aGTGGTCAGCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGct > 1:41145289/1‑150 (MQ=255)
gTGGTCAGCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGctc > 2:41145292/1‑150 (MQ=255)
tGGTCAGCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGctct < 1:41142733/150‑1 (MQ=255)
cGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGtt > 1:41145353/1‑150 (MQ=255)
cGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGACCAGGCACTGGATTTGCTCTATCAGtt < 1:41143773/150‑1 (MQ=255)
ggCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTgt > 2:41145366/1‑138 (MQ=255)
ggCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTc < 2:41141682/150‑1 (MQ=255)
ggCTATGTATTGACAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGctc < 2:41142666/141‑1 (MQ=255)
aTGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGt > 1:41145407/1‑150 (MQ=255)
tGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGtt < 1:41143083/150‑1 (MQ=255)
gTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGt < 2:41143459/148‑1 (MQ=255)
tATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGttt > 2:41145427/1‑149 (MQ=255)
aTTGCCAGGTCGGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGttt < 2:41142777/148‑1 (MQ=255)
ttGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGAttt < 1:41142986/128‑1 (MQ=255)
gCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTgg < 2:41142401/122‑1 (MQ=255)
gCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTGTCAGTTCGAGTTTTAGc < 2:41143344/149‑1 (MQ=255)
gCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAg < 2:41142888/148‑1 (MQ=255)
gCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGc > 1:41145460/1‑149 (MQ=255)
ccAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCa < 1:41142311/149‑1 (MQ=255)
cAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAAt > 2:41145484/1‑150 (MQ=255)
aGGTCTGCAAGGGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCg < 2:41143787/137‑1 (MQ=255)
gTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCg < 1:41143594/150‑1 (MQ=255)
tCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGa < 1:41141713/150‑1 (MQ=255)
cTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGCGTTTTCGCAATGCGac > 1:41145528/1‑149 (MQ=255)
cAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAata < 1:41141926/149‑1 (MQ=255)
aaGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATAtt > 1:41145585/1‑150 (MQ=255)
aGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATAttt < 2:41144073/150‑1 (MQ=255)
aGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATAttt > 2:41145597/1‑150 (MQ=255)
gAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGc > 2:41145643/1‑134 (MQ=255)
aaaTACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTc > 1:41145657/1‑149 (MQ=255)
aaaTACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCt < 2:41143706/150‑1 (MQ=255)
aTACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTAc < 1:41144191/150‑1 (MQ=255)
cGGCGTGGGTATATTTGTCTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATAttt < 1:41143416/141‑1 (MQ=255)
cGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACgg > 1:41145700/1‑149 (MQ=255)
ggCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTAt > 2:41145715/1‑111 (MQ=255)
cGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGt < 1:41143334/150‑1 (MQ=255)
tGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGttt < 2:41143153/150‑1 (MQ=255)
tGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGttt < 2:41143913/150‑1 (MQ=255)
gggTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTa > 2:41145761/1‑150 (MQ=255)
ggTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTAc > 1:41145774/1‑150 (MQ=255)
atatTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGc > 2:41145808/1‑149 (MQ=255)
tatTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCca > 1:41145833/1‑150 (MQ=255)
atTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTCTCTACGGCAGTTTACGCca < 2:41141934/149‑1 (MQ=255)
ttGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACgg > 2:41145876/1‑135 (MQ=255)
gACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCacaaa > 1:41145896/1‑149 (MQ=255)
gACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCacaaa < 1:41143248/149‑1 (MQ=255)
tctATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCtc > 2:41145929/1‑126 (MQ=255)
tataGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAgg > 1:41145956/1‑149 (MQ=255)
taGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACAGCAGTTTACGCCACAAACAAGGCaa > 2:41145985/1‑150 (MQ=255)
gCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACa < 1:41144672/150‑1 (MQ=255)
cAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAg > 1:41146012/1‑150 (MQ=255)
aaCACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGt < 1:41143664/150‑1 (MQ=255)
cacTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCa > 2:41146036/1‑150 (MQ=255)
acTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCAc < 1:41144350/150‑1 (MQ=255)
cTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTc > 1:41146069/1‑147 (MQ=255)
ttacgttaTCGCCTGATGGCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGa < 1:41143854/150‑1 (MQ=255)
ttacgttaTCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGa > 2:41146113/1‑150 (MQ=255)
ttacgttaTCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGa > 1:41146118/1‑150 (MQ=255)
cgttaTCGCCTGATGCCTCAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCa < 2:41143048/150‑1 (MQ=255)
gctaTCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACt > 2:41146168/3‑58 (MQ=255)
ttaTCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAAt < 2:41144181/150‑1 (MQ=255)
ttaTCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAAt > 1:41146177/1‑150 (MQ=255)
cGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGcc > 2:41146222/1‑149 (MQ=255)
gCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGcc > 1:41146241/1‑148 (MQ=255)
cTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGt < 1:41143946/150‑1 (MQ=255)
tGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGt > 2:41146276/1‑149 (MQ=255)
aTGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTa < 2:41142545/149‑1 (MQ=255)
aTGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTa < 1:41144092/149‑1 (MQ=255)
aTGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTAc > 1:41146299/1‑150 (MQ=255)
ccTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGGCCAGTTACt > 2:41146326/1‑148 (MQ=255)
cTAAGCTATATCTGGAAGCCGTGTCTGGTGGAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAatat < 2:41141187/83‑1 (MQ=255)
tAAGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGc > 1:41146358/1‑150 (MQ=255)
aaGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACt > 2:41146380/1‑123 (MQ=255)
aGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGc < 2:41143623/148‑1 (MQ=255)
aGCTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGc < 1:41142123/148‑1 (MQ=255)
cTATATCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGAtt < 2:41144342/150‑1 (MQ=255)
tataTCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGAttt > 1:41146414/1‑150 (MQ=255)
atatCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCg < 2:41142238/145‑1 (MQ=255)
tatCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTc < 2:41144893/149‑1 (MQ=255)
tatCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCa < 1:41142871/150‑1 (MQ=255)
tCTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTGTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAg > 1:41146459/1‑149 (MQ=255)
gcTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAgg < 2:41143253/103‑1 (MQ=255)
cTGGAAGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTa > 2:41146456/1‑150 (MQ=255)
gggAGGCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGc < 1:41142474/138‑1 (MQ=255)
gCCGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGAt > 1:41146509/1‑149 (MQ=255)
ccGTGTCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATaa > 2:41146516/1‑150 (MQ=255)
tgtCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTa > 1:41146552/1‑150 (MQ=255)
tgtCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTa < 2:41145539/150‑1 (MQ=255)
tCTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTAcc < 1:41143158/150‑1 (MQ=255)
cTGGTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTAc > 2:41146572/1‑148 (MQ=255)
ggTGTAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTACCAGt > 1:41146610/1‑150 (MQ=255)
gtgtAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTACCAGtt < 2:41144560/150‑1 (MQ=255)
tAGGCCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTACCAGTTGta < 1:41143498/150‑1 (MQ=255)
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GCGACTCCTCCCAGGTAGTGGTCAGCGGCTATGTATTGCCAGGTCTGCAAGTGAAATACGGCGTGGGTATATTTGACTCTATAGCAACACTCACGTTACGTTATCGCCTGATGCCTAAGCTATATCTGGAAGCCGTGTCTGGTGTAGACCAGGCACTGGATTTGCTCTATCAGTTCGAGTTTTAGCAATGCGAATATTTGTCTACGGCAGTTTACGCCACAAACAAGGCAACAGTCACTGGATGACCAATGCCCAGTTACTGGGCGATTTCAGTATCGATAACTACCAGTTGTATA > NC_000913/4447707‑4448002
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
