Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F13 I1 R1
|
17 |
935.6 |
30504812 |
99.2% |
30260773 |
142.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,799,160 |
(A)7→8 |
intergenic (‑218/+66) |
pheS ← / ← pheM |
phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,799,153 | 1 | . | A | 98.5%
| 2573.3
/ 25.9
| 611 | intergenic (‑211/+73) | pheS/pheM | phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide |
| Reads supporting (aligned to +/- strand): ref base . (2/7); new base A (290/311); total (293/318) |
| Fisher's exact test for biased strand distribution p-value = 1.80e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 663 total aligned reads displayed.
GCTATTTTACTTGCCATTTTGGTCCCGGGCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATAC‑AAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCATTGCTTGCGTTACCTTTTGGTACTCTTC > NC_000913/1799004‑1799297
|
gCTATTTTACTTGCCATTTTGGTCCCGGGCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATAc < 1:5560055/150‑1 (MQ=255)
ttACTTGCCATTTTGGTCCCGGGCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATAC‑aaaaa > 2:5561626/1‑149 (MQ=255)
tACTTGCCATTTTGGTCCCGGGCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATAC‑aaaaaa > 1:5561628/1‑149 (MQ=255)
ttGCCATTTTGGTCCCGGGCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATAC‑aaaaaa‑aag > 1:5561639/1‑147 (MQ=255)
gCCATTTTGGTCCCGGGCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATAC‑aaaaaa‑aagcc < 2:5560785/149‑5 (MQ=255)
ccATTTTGGTCCCGGGCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTc < 1:5560754/150‑1 (MQ=255)
aTTTTGGTCCCGGGCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCa > 2:5561649/1‑150 (MQ=255)
aTTTTGGTCCCGGGCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCa > 1:5561650/1‑150 (MQ=255)
gTCCCGGGCTGTGCTTGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGNCTCCACTGGGa < 1:5561663/150‑1 (MQ=255)
gTCCCGGGCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCAc > 2:5561670/1‑145 (MQ=255)
cccGGGCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAgg > 1:5561673/1‑150 (MQ=255)
ccGGGCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGc < 2:5561012/150‑1 (MQ=255)
gggCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCtt > 1:5561682/1‑150 (MQ=255)
gggCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCtt < 1:5560884/150‑1 (MQ=255)
ggCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCt > 2:5561692/1‑148 (MQ=255)
gCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTc < 1:5560610/150‑1 (MQ=255)
cTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCttt > 1:5561694/1‑148 (MQ=255)
cTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCa < 1:5560819/150‑1 (MQ=255)
cTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCa < 1:5561220/150‑1 (MQ=255)
tgtgCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAACACGCGCATACAAAAAAA‑AGCCTCCACt > 2:5561702/1‑137 (MQ=255)
cTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGgcgc > 2:5561713/1‑150 (MQ=255)
cTCGAAATTCTCACGTACTCAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGANGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGgc < 1:5561001/148‑1 (MQ=255)
gAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGt > 1:5561722/1‑150 (MQ=255)
aaTTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATAC‑aaaa < 1:5561256/115‑1 (MQ=255)
aTTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGtttt > 2:5561729/1‑150 (MQ=255)
ttCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTc > 1:5561734/1‑150 (MQ=255)
aCGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGttt < 1:5561173/150‑1 (MQ=255)
cGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTttc > 1:5561741/1‑150 (MQ=255)
aCTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGa > 2:5561751/1‑121 (MQ=255)
aCTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTttctct > 1:5561750/1‑150 (MQ=255)
cTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTttctct < 1:5561237/149‑1 (MQ=255)
tAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATAC‑aaaaaa‑aagc < 2:5560878/107‑4 (MQ=255)
cGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCAcgcg > 2:5561763/1‑150 (MQ=255)
gCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACACTTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCa < 2:5560673/119‑1 (MQ=255)
gCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTc < 1:5561354/131‑1 (MQ=255)
tCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACgcgc > 1:5561773/1‑148 (MQ=255)
cGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTa < 2:5561152/148‑1 (MQ=255)
ggTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGcc > 2:5561779/1‑150 (MQ=255)
gTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGcct > 1:5561787/1‑150 (MQ=255)
ttCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGcctcc > 2:5561795/1‑150 (MQ=255)
ctcCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCa > 2:5561802/1‑135 (MQ=255)
ccGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGa > 1:5561807/1‑150 (MQ=255)
cgcgCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTg < 1:5560675/147‑1 (MQ=255)
cgcgCTGGCCGTGTCCAGTCTCGCTGCGACAATTACACCTGATGAGACAGGCTTTTTTTTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGTGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTg < 2:5561181/147‑1 (MQ=255)
gcTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTggct > 2:5561815/1‑145 (MQ=255)
cTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAg > 1:5561819/1‑150 (MQ=255)
gCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGt < 1:5561072/149‑1 (MQ=255)
cGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGc < 1:5561119/149‑1 (MQ=255)
cGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCt < 2:5560909/150‑1 (MQ=255)
cGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCt < 1:5561330/150‑1 (MQ=255)
gtCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTa > 1:5561832/1‑148 (MQ=255)
tCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCt < 2:5560976/146‑1 (MQ=255)
tCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAg < 1:5560912/150‑1 (MQ=255)
cAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTGTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGgcgc > 2:5561838/1‑96 (MQ=255)
aGTCTCGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCa < 1:5560474/137‑1 (MQ=255)
tCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTaaaa < 1:5561314/150‑1 (MQ=255)
ggCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTaaaaa > 1:5561849/1‑148 (MQ=255)
gCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTaaaaaaa < 1:5560714/149‑1 (MQ=255)
gCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTaaaaaa < 1:5561271/148‑1 (MQ=255)
tGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAaag > 2:5561856/1‑148 (MQ=255)
cGACAATTACCCCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAaagaag < 1:5561133/149‑1 (MQ=255)
cGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGc > 1:5561861/1‑150 (MQ=255)
aCAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCgg < 1:5561384/150‑1 (MQ=255)
aTTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGaaa < 1:5561191/150‑1 (MQ=255)
aTTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGaaa < 1:5561605/150‑1 (MQ=255)
ttACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCTCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAgg < 2:5561129/123‑1 (MQ=255)
ttACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGaaaa < 1:5561293/150‑1 (MQ=255)
acacCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGAGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTCGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGCaaaa > 1:5561874/1‑148 (MQ=255)
cacCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGaaaaa < 1:5561090/148‑2 (MQ=255)
ccTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTg > 2:5561881/1‑76 (MQ=255)
cTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATagca < 1:5561054/149‑1 (MQ=255)
tgatgaGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAaag < 2:5561437/133‑1 (MQ=255)
gatgaGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTa < 2:5561322/120‑1 (MQ=255)
atgaGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATagcagc < 1:5560956/148‑1 (MQ=255)
atgaGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAgcagca > 1:5561884/1‑149 (MQ=255)
gagaCAGGCTTGTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGcatt < 2:5560811/149‑1 (MQ=255)
aCAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGcattcatt > 1:5561892/1‑150 (MQ=255)
cAGGCTTTTTATTTTTCAAAACGCGCATAC‑AAAAAATAGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTttctct < 2:5560380/80‑1 (MQ=255)
aGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGgcg < 2:5561305/62‑1 (MQ=255)
aGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCAttgc > 2:5561899/1‑150 (MQ=255)
ggCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAAt < 2:5561398/134‑1 (MQ=255)
gCTTTTTATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTCGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCAttgctt > 1:5561905/1‑150 (MQ=255)
tttttATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCAttgcttgc > 1:5561915/1‑150 (MQ=255)
tttttATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTGCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTACAAAaagaa < 2:5561043/122‑1 (MQ=255)
ttttATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCATTGCTTGCg > 2:5561921/1‑150 (MQ=255)
tttATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCAttgcttgc < 1:5561426/148‑1 (MQ=255)
tttATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCATTGCTTGCGt > 1:5561923/1‑150 (MQ=255)
ttATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCATTGCTTGCGt < 1:5560973/149‑1 (MQ=255)
tATTTTTCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCATTGCTTGCGTTa > 1:5561934/1‑150 (MQ=255)
ttttCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTNTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCATTGCTTGCGTTACCt > 1:5561940/1‑150 (MQ=255)
ttCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGtt < 2:5561082/61‑1 (MQ=255)
ttCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCAttgctt > 2:5561942/1‑139 (MQ=255)
tCAAAACGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCATTGCTTGCGTTACCttt < 2:5561227/149‑1 (MQ=255)
aaaCGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCGCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAgcagca > 1:5561955/1‑125 (MQ=255)
aaCGCGCATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTACGTTTCTCTTCTCACGCGATAGCATCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCgg > 2:5561958/1‑112 (MQ=255)
gcgcATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCATTGCTTGCGTTACCTTTTGGTAct < 1:5560848/149‑1 (MQ=255)
cgcATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCATTGCTTGCGTTACCTTTTGGTActct < 2:5561506/150‑1 (MQ=255)
cgcATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCATTGCTTGCGTTACCTTTTGGTActct < 2:5561362/150‑1 (MQ=255)
gcATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCATTGCTTGCGTTACCTTTTGGTACTCtt < 1:5561464/150‑1 (MQ=255)
gcATACAAAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCATTGCTTGCGTTACCTTTTGGTACTCtt > 1:5561968/1‑150 (MQ=255)
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GCTATTTTACTTGCCATTTTGGTCCCGGGCTGTGCTCGAAATTCTCACGTACTTAAATACGCTCCGGTTTCTCCGCGCTGGCCGTGTCCAGTCTGGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATAC‑AAAAAA‑AGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAAAAGAAGCGGAAAATAGCAGCATTCATTGCTTGCGTTACCTTTTGGTACTCTTC > NC_000913/1799004‑1799297
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
