Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F13 I1 R1
|
17 |
935.6 |
30504812 |
99.2% |
30260773 |
142.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,543,523 |
G→A |
D137N (GAT→AAT) |
fimA → |
type 1 fimbriae major subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,543,523 | 0 | G | A | 99.7%
| 3876.9
/ ‑4.2
| 923 | D137N (GAT→AAT) | fimA | type 1 fimbriae major subunit |
| Reads supporting (aligned to +/- strand): ref base G (1/2); new base A (430/489); total (431/492) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 930 total aligned reads displayed.
GTTGCATCTAAAGCCGCTGTTGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACC > NC_000913/4543376‑4543669
|
ttGCATCTAAAGCCGCTGTTGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATg > 2:14862087/1‑150 (MQ=255)
ttGCATCTAAAGCCGCTGTTGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATg > 1:14862084/1‑150 (MQ=255)
cTAAAGCCGCTGTTGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGa > 2:14862106/1‑150 (MQ=255)
tAAAGCCGCTGTTGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGa > 1:14862110/1‑149 (MQ=255)
aaGCCGCTGTTGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGTTAGCGCAACAAGCGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCg < 2:14861485/146‑1 (MQ=255)
ccGCTGTTGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCTCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACAttt < 2:14861223/149‑1 (MQ=255)
ccGCTGTTGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACAttt < 2:14861700/149‑1 (MQ=255)
cGCTGTTGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAg > 1:14862128/1‑150 (MQ=255)
gCTGTTGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGt > 2:14862133/1‑150 (MQ=255)
tGTTGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGtt < 1:14861016/149‑1 (MQ=255)
tGTTGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGtt < 2:14861251/149‑1 (MQ=255)
ttGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGtt > 1:14862155/1‑147 (MQ=255)
ttGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTc < 2:14861114/148‑1 (MQ=255)
gCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGa < 1:14860852/149‑1 (MQ=255)
ccTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGaa < 1:14861103/149‑1 (MQ=255)
ccTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGaa < 1:14860944/149‑1 (MQ=255)
cTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGaaa > 2:14862163/1‑149 (MQ=255)
tttttAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAaac > 1:14862170/1‑149 (MQ=255)
tttAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAaacaac > 2:14862175/1‑150 (MQ=255)
ttAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAaacaac < 2:14860934/149‑1 (MQ=255)
aGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAAccc > 2:14862194/1‑149 (MQ=255)
aGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCt > 1:14862194/1‑150 (MQ=255)
gTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGa < 2:14861537/150‑1 (MQ=255)
gTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGa < 1:14861297/150‑1 (MQ=255)
tACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGaaa < 2:14861148/140‑1 (MQ=255)
tACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGaa < 2:14861041/150‑1 (MQ=255)
cGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAAt > 1:14862211/1‑149 (MQ=255)
gggATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCg < 2:14860346/118‑1 (MQ=255)
gCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAAc > 2:14862217/1‑150 (MQ=255)
gCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAAc < 1:14861263/150‑1 (MQ=255)
gATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGAAGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACg > 1:14862229/1‑149 (MQ=255)
ttGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGaa < 2:14860859/150‑1 (MQ=255)
tGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGaa < 2:14861568/149‑1 (MQ=255)
tGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAAc > 2:14862238/1‑150 (MQ=255)
aTGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAAcc > 1:14862245/1‑149 (MQ=255)
cGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAAt < 2:14861008/149‑1 (MQ=255)
ggTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATAcc < 1:14861578/150‑1 (MQ=255)
gTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCa > 1:14862261/1‑150 (MQ=255)
gTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGAGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGTTGACGCTGAATGGTGCGACATTTAGTTCAGAAACATCCCTGAATAACGGAACCAATACCa > 2:14862261/1‑150 (MQ=255)
tCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGaa < 2:14861408/132‑1 (MQ=255)
tCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCAt < 2:14861316/150‑1 (MQ=255)
aTACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTc < 2:14861596/150‑1 (MQ=255)
tACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTcc < 2:14860781/150‑1 (MQ=255)
ccAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGt > 1:14862283/1‑150 (MQ=255)
ccAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGt > 2:14862281/1‑150 (MQ=255)
cAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGGCGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGtt < 1:14861545/150‑1 (MQ=255)
cAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGtt < 2:14861080/150‑1 (MQ=255)
gTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAg > 1:14862299/1‑150 (MQ=255)
ttCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAgg < 2:14861347/150‑1 (MQ=255)
ttCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAg > 2:14862303/1‑149 (MQ=255)
gCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACACCCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGt < 2:14860973/150‑1 (MQ=255)
gCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGgcgc < 1:14861400/148‑1 (MQ=255)
gCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGgcg < 1:14861500/147‑1 (MQ=255)
gCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGgcg < 1:14861848/147‑1 (MQ=255)
ctctGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGgcg < 2:14861375/146‑1 (MQ=255)
ctctGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGtt < 1:14861622/150‑1 (MQ=255)
ctctGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGt > 2:14862321/1‑149 (MQ=255)
tGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTAtt > 1:14862332/1‑150 (MQ=255)
agagTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTg > 2:14862340/1‑150 (MQ=255)
agTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCa < 2:14861623/150‑1 (MQ=255)
gTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCaa < 1:14862016/150‑1 (MQ=255)
gTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCaa < 1:14861373/150‑1 (MQ=255)
cAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCg > 1:14862355/1‑150 (MQ=255)
cAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCg > 2:14862356/1‑150 (MQ=255)
gCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCggg < 1:14861476/150‑1 (MQ=255)
gggTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCTGgcgc > 2:14862368/1‑128 (MQ=255)
tAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAc > 1:14862377/1‑150 (MQ=255)
caacaaACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCGAGGCGCGTTCTTTTGCAACCGGGGCCGCAACCCCgg > 2:14862392/1‑150 (MQ=255)
caacaaACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCgg > 1:14862394/1‑150 (MQ=255)
aacaaACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCggg < 1:14861189/150‑1 (MQ=255)
acaaACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGt < 1:14861718/150‑1 (MQ=255)
caaACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGtg < 1:14861432/150‑1 (MQ=255)
aaCGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCgg > 2:14862407/1‑145 (MQ=255)
ttGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTa < 1:14861336/150‑1 (MQ=255)
tgtgCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGc > 1:14862420/1‑150 (MQ=255)
tgtgCAGATCCTGGACAGAAAGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGc < 1:14861675/150‑1 (MQ=255)
gtgCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGCGCCGCAACCCCGGGTGCTGCTAATGCg > 2:14862426/1‑150 (MQ=255)
tgCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCg < 1:14861231/149‑1 (MQ=255)
cAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTACGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGtgctgc > 1:14862436/1‑140 (MQ=255)
aGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGAt < 2:14861190/149‑1 (MQ=255)
ccTGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGAc > 1:14862449/1‑150 (MQ=255)
tGGACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCt > 2:14862450/1‑150 (MQ=255)
ggACAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTgctgct < 2:14861844/133‑1 (MQ=255)
cAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGAt < 2:14861753/139‑1 (MQ=255)
cAGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCAACCTTCaa < 1:14861899/150‑1 (MQ=255)
aGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAg > 2:14862468/1‑150 (MQ=255)
aGAACGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAg > 1:14862470/1‑150 (MQ=255)
aCGGGTGCTGCGCTGACGCTGAATGGTGCGACAttt < 1:14860749/36‑1 (MQ=255)
cGGGTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGt > 1:14862484/1‑148 (MQ=255)
gTGCTGCGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAg > 2:14862490/1‑149 (MQ=255)
tgctgcGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTa < 1:14862312/150‑1 (MQ=255)
gctgcGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTa > 1:14862504/1‑149 (MQ=255)
ctgcGCTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATc < 1:14861529/150‑1 (MQ=255)
cgctgacgctgaATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCaa > 1:14862515/1‑149 (MQ=255)
gcTGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAAt > 2:14862517/1‑149 (MQ=255)
tGACGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCATCCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGt < 2:14861445/141‑1 (MQ=255)
aCGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAAc < 1:14860009/148‑1 (MQ=255)
aCGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCt < 2:14862037/150‑1 (MQ=255)
cGCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTa > 1:14862531/1‑150 (MQ=255)
gCTGAATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTAc < 1:14861782/150‑1 (MQ=255)
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GTTGCATCTAAAGCCGCTGTTGCCTTTTTAGGTACGGCGATTGATGCGGGTCATACCAACGTTCTGGCTCTGCAGAGTTCAGCTGCGGGTAGCGCAACAAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACC > NC_000913/4543376‑4543669
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
