Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F13 I1 R1 20 580.9 19806870 98.8% 19569187 140.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,468,946 Δ1 bp coding (733/921 nt) yfdH → CPS‑53 (KpLE1) prophage; bactoprenol glucosyl transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,468,9430G.99.6% 2779.9 / 1.5 481coding (730/921 nt)yfdHCPS‑53 (KpLE1) prophage; bactoprenol glucosyl transferase
Reads supporting (aligned to +/- strand):  ref base G (0/2);  new base . (250/229);  total (250/231)
Fisher's exact test for biased strand distribution p-value = 2.30e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 506 total aligned reads displayed.

TGCGAGCGGAAAGAATTGCTGGAGATACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTG  >  NC_000913/2468794‑2469087
                                                                                                                                                     |                                                                                                                                                
  cGAGCTGAAAGAATTGCTGGAGATACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATggg                                                                                                                                                <  2:5090601/150‑1 (MQ=255)
  cGAGCGGAAAGAATTGCTGGAGATACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATggg                                                                                                                                                >  2:5091021/1‑150 (MQ=255)
  cGAGCGGAAAGAATTGCTGGAGATACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATgg                                                                                                                                                 <  1:5090634/149‑1 (MQ=255)
   gAGCGGAAAGAATTGCTGGAGATACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATgggc                                                                                                                                               >  1:5091027/1‑149 (MQ=255)
       ggAAAGAATTGCTGGAGATACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATgggcgtg                                                                                                                                            >  2:5091030/1‑145 (MQ=255)
          aaGAATTGCTGGAGATACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGgatg                                                                                                                                       <  2:5090660/150‑1 (MQ=255)
           aGAATTGCTGGAGATACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGgatga                                                                                                                                      >  2:5091037/1‑150 (MQ=255)
              aTTGCTGGAGATACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGAttt                                                                                                                                   <  1:5090041/150‑1 (MQ=255)
              aTTGCTGGAGATACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGAttt                                                                                                                                   <  1:5090492/150‑1 (MQ=255)
              aTTGCTGGAGATACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGAtt                                                                                                                                    <  1:5090396/149‑1 (MQ=255)
               ttGCTGGAGATACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGAttt                                                                                                                                   >  1:5091046/1‑149 (MQ=255)
                  cTGGAGATACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGAttt                                                                                                                                   >  1:5091052/1‑146 (MQ=255)
                      agaTACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATAc                                                                                                                            >  2:5091055/1‑149 (MQ=255)
                       gaTACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATgggcgtg                                                                                                                                            <  2:5090633/133‑5 (MQ=255)
                       gaTACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTa                                                                                                                          >  1:5091059/1‑150 (MQ=255)
                        aTACAAAATTTAATGGATGGAANCTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTAt                                                                                                                         <  2:5090515/150‑1 (MQ=255)
                           cAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCa                                                                                                                       >  1:5091068/1‑149 (MQ=255)
                           cAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCa                                                                                                                       >  2:5091067/1‑149 (MQ=255)
                            aaaaTTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGGATTACAAGGTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATCTTAGATACTATCa                                                                                                                       <  1:5090672/148‑1 (MQ=255)
                              aaTTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATAtt                                                                                                                   >  2:5091073/1‑150 (MQ=255)
                               aTTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATAttt                                                                                                                  <  2:5090536/150‑1 (MQ=255)
                                   aaTGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATTCTATCATATTTGGa                                                                                                               <  2:5090476/149‑1 (MQ=255)
                                   aaTGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGa                                                                                                               <  1:5090564/149‑1 (MQ=255)
                                    atggatggAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGaaa                                                                                                             <  1:5090712/150‑1 (MQ=255)
                                      ggatggaAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATg                                                                                                           >  1:5091084/1‑150 (MQ=255)
                                         tggaAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTg                                                                                                        >  2:5091085/1‑150 (MQ=255)
                                             aaCTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAg                                                                                                    >  1:5091092/1‑150 (MQ=255)
                                              aCTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAgg                                                                                                   >  2:5091093/1‑150 (MQ=255)
                                                 ttGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACCTACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGa                                                                                                >  2:5091101/1‑150 (MQ=255)
                                                  tGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGa                                                                                                <  1:5090548/149‑1 (MQ=255)
                                                    gAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGata                                                                                              >  1:5091108/1‑149 (MQ=255)
                                                    gAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGat                                                                                               <  1:5090527/148‑1 (MQ=255)
                                                    gAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATNTGGAAAt                                                                                                            >  2:5091108/1‑135 (MQ=255)
                                                       tttAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCt                                                                                          >  1:5091118/1‑150 (MQ=255)
                                                        ttAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCtt                                                                                         >  2:5091118/1‑150 (MQ=255)
                                                          aGCACTTGACGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTCT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTc                                                                                        <  2:5090567/149‑1 (MQ=255)
                                                           gCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCac                                                                                      >  2:5091124/1‑150 (MQ=255)
                                                            cACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCact                                                                                     <  1:5090593/150‑1 (MQ=255)
                                                             aCTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCacta                                                                                    >  1:5091131/1‑150 (MQ=255)
                                                               ttGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCactact                                                                                  >  1:5091137/1‑150 (MQ=255)
                                                                 gAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACtt                                                                                 <  2:5090805/149‑1 (MQ=255)
                                                                   gggTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGtt                                                                              >  1:5091144/1‑150 (MQ=255)
                                                                    ggTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGtt                                                                              <  2:5090684/149‑1 (MQ=255)
                                                                    ggTATTACAAGCTTTTCCACATTCCCTCGTCGCATCTGGACATACATAGGGTTAGTGGTAGTCAGTGTAGCATTTATTTAT‑GGGCGTGGTTGATTTTAGATACTATCATATTTgg                                                                                                                <  2:5090447/115‑1 (MQ=255)
                                                                       aTTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAg                                                                                                    >  2:5091146/1‑124 (MQ=255)
                                                                             aGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGt                                                                    >  1:5091155/1‑150 (MQ=255)
                                                                              gCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGtt                                                                   >  2:5091155/1‑150 (MQ=255)
                                                                              gCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGtt                                                                   <  1:5090437/150‑1 (MQ=255)
                                                                               cTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGttt                                                                  <  1:5090776/150‑1 (MQ=255)
                                                                                ttttCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGtttt                                                                 >  1:5091165/1‑150 (MQ=255)
                                                                                  ttCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGttttt                                                                <  1:5090457/149‑1 (MQ=255)
                                                                                  ttCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGtttt                                                                 >  2:5091166/1‑148 (MQ=255)
                                                                                  ttCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGtttt                                                                 <  2:5090504/148‑1 (MQ=255)
                                                                                  gtCCACATTCCCTCTTCGCATCGGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAg                                                                                                                                <  2:5090765/84‑1 (MQ=255)
                                                                                   tCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGaaa                                                                                                             <  2:5090397/103‑1 (MQ=255)
                                                                                   tCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCaa                                                                          <  2:5090647/138‑1 (MQ=255)
                                                                                   tCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTa                                                               <  1:5090918/149‑1 (MQ=255)
                                                                                      acaTTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGtt                                                                   >  2:5091174/1‑142 (MQ=255)
                                                                                      acaTTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTg                                                           >  1:5091173/1‑150 (MQ=255)
                                                                                        aTTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGa                                                         <  2:5090735/150‑1 (MQ=255)
                                                                                          tCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAg                                                              <  2:5090292/143‑1 (MQ=255)
                                                                                           cccTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAAtt                                                      >  1:5091184/1‑150 (MQ=255)
                                                                                           cccTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGATGTTAg                                                                                                    >  2:5091184/1‑104 (MQ=255)
                                                                                               ctTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAAtt                                                      <  1:5090352/146‑1 (MQ=255)
                                                                                                ttCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAgat                                                 >  1:5091194/1‑150 (MQ=255)
                                                                                                  cGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAgatg                                                <  1:5090618/149‑1 (MQ=255)
                                                                                                   gCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAgatga                                               <  1:5090693/149‑1 (MQ=255)
                                                                                                   gCATCTGGACATACATAGCGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGgatgat                                                                                                                                     >  2:5091197/1‑63 (MQ=255)
                                                                                                    cATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGAtt                                             <  2:5090698/150‑1 (MQ=255)
                                                                                                     aTCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTg                                            >  1:5091203/1‑150 (MQ=255)
                                                                                                     aTCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTg                                            >  2:5091205/1‑150 (MQ=255)
                                                                                                        tgttcatacataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCtt                                                                                         <  2:5090547/98‑1 (MQ=255)
                                                                                                          gACATACGTAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAAt                                        <  2:5090619/149‑1 (MQ=255)
                                                                                                          gACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAAt                                        <  1:5090761/149‑1 (MQ=255)
                                                                                                          gACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTAATTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGANATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATa                                       <  1:5090576/150‑1 (MQ=255)
                                                                                                           acatacatAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAg                                      >  2:5091212/1‑150 (MQ=255)
                                                                                                            catacataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACtt                                                                                 <  2:5090429/106‑1 (MQ=255)
                                                                                                              tacataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATAGTATCATATTTGGAAATGCTGTTAGGAGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAgatgat                                              >  2:5091218/1‑139 (MQ=255)
                                                                                                              tacataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAg                                   <  2:5090842/150‑1 (MQ=255)
                                                                                                                cataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTa                                 >  1:5091222/1‑150 (MQ=255)
                                                                                                                cataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTa                                 <  1:5090859/150‑1 (MQ=255)
                                                                                                                   aGGGTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGGAt                                >  2:5091226/1‑148 (MQ=255)
                                                                                                                    gggTTAGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTa                              <  1:5090735/149‑1 (MQ=255)
                                                                                                                         aGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGaa                        >  2:5091231/1‑150 (MQ=255)
                                                                                                                         aGTGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGa                         <  1:5090820/149‑1 (MQ=255)
                                                                                                                           tGGTAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAat                       >  2:5091237/1‑149 (MQ=255)
                                                                                                                              tAGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAatatat                   >  1:5091243/1‑150 (MQ=255)
                                                                                                                               aGCCAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATAtt                  >  2:5091247/1‑150 (MQ=255)
                                                                                                                                 ccAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGNTTCAATACTGTTTTTAGGTGGAATACAGATGATTGGAATAGGAGTATTAGGTGAATATATTg                 >  1:5091254/1‑149 (MQ=255)
                                                                                                                                  cAGTGTAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATGCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGa               >  2:5091254/1‑150 (MQ=255)
                                                                                                                                       tAGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGcac          <  1:5090236/150‑1 (MQ=255)
                                                                                                                                        aGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGcaca         >  1:5091265/1‑150 (MQ=255)
                                                                                                                                        aGCATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGcaca         >  2:5091264/1‑150 (MQ=255)
                                                                                                                                          cATTTATTTAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCacata       >  1:5091274/1‑150 (MQ=255)
                                                                                                                                           atttatttAT‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCacata       >  2:5091276/1‑149 (MQ=255)
                                                                                                                                              tatttat‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACAtt   >  2:5091282/1‑150 (MQ=255)
                                                                                                                                               atttat‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACAtt   >  1:5091288/1‑149 (MQ=255)
                                                                                                                                                tttat‑GGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTg  <  2:5090923/149‑1 (MQ=255)
                                                                                                                                                tttat‑GGGCGTGGATGATTTTAGATACTAGCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTg  <  1:5090903/149‑1 (MQ=255)
                                                                                                                                                tttat‑GGGCGTAGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTg  <  1:5090971/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                
TGCGAGCGGAAAGAATTGCTGGAGATACAAAATTTAATGGATGGAAACTTTGGAATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTG  >  NC_000913/2468794‑2469087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A