Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F13 I1 R1 20 580.9 19806870 98.8% 19569187 140.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,606,215 (G)8→9 noncoding (72/87 nt) leuP ← tRNA‑Leu

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,606,2071.G94.1% 1398.7 / 82.6 358noncoding (80/87 nt)leuPtRNA‑Leu
Reads supporting (aligned to +/- strand):  ref base . (11/10);  new base G (168/169);  total (179/179)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 397 total aligned reads displayed.

AGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGT  >  NC_000913/4606059‑4606350
                                                                                                                                                      |                                                                                                                                               
aGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑g                                                                                                                                                <  1:9760410/150‑1 (MQ=255)
        aGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCCTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑ggggggggg                                                                                                                                        <  2:9760500/150‑2 (MQ=255)
          tAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑gggggg                                                                                                                                           >  1:9761233/1‑145 (MQ=255)
            aaGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑gggggggggactt                                                                                                                                    <  1:9760610/150‑6 (MQ=255)
            aaGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑ggggggggg                                                                                                                                        <  1:9760519/146‑2 (MQ=255)
               aTAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCATACTTTTTTTGATATCCCCTCGTTTGGTGC‑Ga                                                                                                                                                  >  1:9761249/1‑134 (MQ=255)
                 aaTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAAc                                                                                                                                 <  1:9760795/149‑1 (MQ=255)
                      gTGCGAGGGGGGGGACTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGGCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGaa                                                                                                                                  <  2:9760774/143‑1 (MQ=255)
                      gTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCAc                                                                                                                           <  1:9760633/150‑1 (MQ=255)
                         cGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGATACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGGTATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTc                                                                                                                        <  1:9760497/150‑1 (MQ=255)
                         cGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑gggggg                                                                                                                                           <  2:9760743/130‑1 (MQ=255)
                          gAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAAcccc                                                                                                                              >  1:9761276/1‑143 (MQ=255)
                           aGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑ggggg                                                                                                                                            <  2:9760595/127‑1 (MQ=255)
                             gggggggACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑ggggggg                                                                                                                                          <  2:9760691/127‑1 (MQ=255)
                                     cTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAacac                                                                                                             >  1:9761294/1‑149 (MQ=255)
                                         aaCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAaca                                                                                                        <  1:9760480/150‑1 (MQ=255)
                                         aaCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAaca                                                                                                        <  1:9760674/150‑1 (MQ=255)
                                         aaCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAaca                                                                                                        <  1:9760590/150‑1 (MQ=255)
                                          aCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑ggggggggga                                                                                                                                       <  2:9760116/117‑3 (MQ=255)
                                            ccccACGTCCGTAAGGACACTAACGCCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑ggggggg                                                                                                                                          <  2:9759966/112‑1 (MQ=255)
                                            ccccACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCt                                                                                                     <  1:9760768/150‑1 (MQ=255)
                                                  gTCCGTAAGGACACTAAAACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTAGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAAc                                                                                                                                 <  2:9760832/116‑1 (MQ=25)
                                                    ccGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCGAg                                                                                             >  1:9761318/1‑150 (MQ=255)
                                                     cGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAg                                                                                             <  1:3806492/149‑1 (MQ=255)
                                                       tAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAgcgc                                                                                          <  1:9760876/150‑1 (MQ=255)
                                                          ggACACTAACACCTGAAGCTGGCGCGTCTACCAATGCTGCCACCTTCGCACAGTCATCTTACTTTTTTGGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCNCGACCGTAAGaa                                                                                                                >  2:9761324/1‑125 (MQ=37)
                                                          ggACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTc                                                                                       <  1:9760563/150‑1 (MQ=255)
                                                               cTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACGCCTGAAGCGAGCGCGTCTAcc                                                                                   >  1:9761332/1‑149 (MQ=255)
                                                                  acacCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTa                                                                                              <  1:9760946/135‑1 (MQ=255)
                                                                   cacCTGAAGCTAGCGCGTCTACCAATGCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCGCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTc                                                                              <  1:9760734/150‑1 (MQ=255)
                                                                    acCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTc                                                                              >  1:9761338/1‑149 (MQ=255)
                                                                          aGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAAtt                                                                               >  1:9761346/1‑142 (MQ=255)
                                                                           gcgaGCGCGTCTACCAATTCCGCCACCTACGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTcc                                                                             <  1:9760866/139‑1 (MQ=255)
                                                                           gCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAcc                                                                       <  1:9760817/149‑1 (MQ=255)
                                                                             tAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTa                                                                                     >  1:9761353/1‑133 (MQ=255)
                                                                                   gTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGccc                                                                >  1:9761362/1‑148 (MQ=255)
                                                                                   gTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAg                                                              >  1:9761358/1‑150 (MQ=255)
                                                                                     cTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTaa                                                                                                          <  2:9760748/104‑1 (MQ=255)
                                                                                      tACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGGAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAc                                                                        >  1:9761369/1‑137 (MQ=255)
                                                                                        ccAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑gggg                                                                                                                                             >  2:9761369/1‑65 (MQ=255)
                                                                                         cAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCa                                                                         <  1:9760916/132‑1 (MQ=255)
                                                                                            ttCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGt                                                             >  2:9761376/1‑142 (MQ=255)
                                                                                               cGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCact                                                             >  2:9761381/1‑137 (MQ=255)
                                                                                                gCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGCCTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGc                                                                  >  2:9761386/1‑133 (MQ=255)
                                                                                                gCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAatat                                                  >  1:9761388/1‑149 (MQ=255)
                                                                                                gCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATc                                                 <  1:9760354/150‑1 (MQ=255)
                                                                                                   aCCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAc                                              >  1:9761395/1‑150 (MQ=255)
                                                                                                   aCCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAc                                              >  1:9761399/1‑150 (MQ=255)
                                                                                                     cTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACg                                             <  1:9760693/149‑1 (MQ=255)
                                                                                                     cTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑GGGGGGGGa                                                                                                                                        >  2:9761400/1‑57 (MQ=255)
                                                                                                      ttCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGNCTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAatat                                                  <  1:9760832/143‑1 (MQ=255)
                                                                                                       tCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGG‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCg                                                          <  1:9760785/134‑1 (MQ=255)
                                                                                                        cGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTgg                                          <  1:9761326/149‑1 (MQ=255)
                                                                                                        cGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTg                                           >  1:9761407/1‑148 (MQ=255)
                                                                                                          cacaGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGc                                                       <  1:9760841/134‑1 (MQ=255)
                                                                                                          cacaGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCaa                                                     >  2:9761409/1‑136 (MQ=255)
                                                                                                           acaGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGccc                                                                >  2:9761415/1‑124 (MQ=255)
                                                                                                           acaGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGtttt                                      >  1:9761416/1‑150 (MQ=255)
                                                                                                            caGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAgc                                                                                            <  1:9760541/95‑1 (MQ=255)
                                                                                                            caGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGttttt                                     >  1:9761423/1‑150 (MQ=255)
                                                                                                            caGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGtttt                                      <  1:9760856/149‑1 (MQ=255)
                                                                                                             aGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTc                                                                    >  2:9761423/1‑118 (MQ=255)
                                                                                                               tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGt                                  >  1:9761431/1‑150 (MQ=255)
                                                                                                               tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGt                                  <  1:9760775/150‑1 (MQ=255)
                                                                                                                cATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc                                                                 >  2:9761434/1‑118 (MQ=255)
                                                                                                                 aTCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCNGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTg                                 <  1:9760927/149‑1 (MQ=255)
                                                                                                                  tCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCCCGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGCCTACCAATTCCGCCACCTTCGcc                                                                 >  2:9761438/1‑116 (MQ=18)
                                                                                                                   cTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGc                                >  1:9761444/1‑148 (MQ=255)
                                                                                                                      aCTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCg                               <  1:9761020/146‑1 (MQ=255)
                                                                                                                      aCTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGa                              <  2:9761364/147‑1 (MQ=255)
                                                                                                                      aCTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAgg                            <  1:9760892/149‑1 (MQ=255)
                                                                                                                       cTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGccc                                                                >  2:9761448/1‑112 (MQ=255)
                                                                                                                       cTTTTTTTGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTg                                                            >  1:9761451/1‑116 (MQ=255)
                                                                                                                        tttttttGATATCGACTCGTTTGGTGCGGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc                                                                           <  1:9760897/100‑1 (MQ=17)
                                                                                                                           ttttGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAggggggg                       <  1:9760993/149‑1 (MQ=255)
                                                                                                                            tttGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGccc                                                                >  2:9761458/1‑107 (MQ=255)
                                                                                                                            tttGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTACGAGc                                                       >  2:9761454/1‑116 (MQ=255)
                                                                                                                             ttGATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGAc                    >  1:9761465/1‑150 (MQ=255)
                                                                                                                              tGATATCGCCTCGTTTGGGGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAacac                                                                                                             <  2:9760624/60‑1 (MQ=18)
                                                                                                                              tGATATCACCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTcc                                                                             <  2:9760706/92‑1 (MQ=255)
                                                                                                                               gATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAac                                                                                                               <  2:9761009/57‑1 (MQ=18)
                                                                                                                               gATATCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACtt                  >  1:9761469/1‑150 (MQ=255)
                                                                                                                                   tCGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGna               <  1:9760977/149‑1 (MQ=255)
                                                                                                                                    cGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAAcc             >  1:9761475/1‑150 (MQ=255)
                                                                                                                                    cGCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGAGGTTTTTCGTGCGAgggggg                        >  2:9761472/1‑139 (MQ=255)
                                                                                                                                     gCCTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGc                                                       >  1:9761480/1‑107 (MQ=255)
                                                                                                                                     gCCGCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTgg                                          <  2:9760342/120‑1 (MQ=255)
                                                                                                                                      ccTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAAcccc           >  1:9761485/1‑150 (MQ=255)
                                                                                                                                       cTCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc                                                                 >  2:9761486/1‑95 (MQ=255)
                                                                                                                                        tCGTTTGGTGG‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGa                                                                                                                 <  1:9760457/46‑1 (MQ=14)
                                                                                                                                        tCGTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCtt                                                                     <  2:9760845/90‑1 (MQ=255)
                                                                                                                                          gTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAg                                                                                                 <  2:9760867/60‑1 (MQ=14)
                                                                                                                                          gTTTGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACg       >  1:9761494/1‑150 (MQ=255)
                                                                                                                                           tttGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTcc                                                                             <  1:9761063/79‑1 (MQ=255)
                                                                                                                                            ttGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTa                                                                                     >  2:9761496/1‑70 (MQ=255)
                                                                                                                                            ttGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGt      >  1:9761499/1‑149 (MQ=255)
                                                                                                                                             tGGTGC‑GGGGGGGGGGGACTTGACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGt      <  1:9760719/148‑1 (MQ=255)
                                                                                                                                             tGGTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAgcg                                                                                           <  2:9760809/63‑1 (MQ=255)
                                                                                                                                             tGGTGC‑GA‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGCCTACCAATTCCg                                                                            <  2:9760902/77‑1 (MQ=25)
                                                                                                                                               gTGC‑GAGGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAATCTAGCGGGTCTACCAATTCCGCCACCTTAGcct                                                                >  2:9761501/1‑87 (MQ=11)
                                                                                                                                                      |                                                                                                                                               
AGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGC‑GA‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGT  >  NC_000913/4606059‑4606350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A