Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F13 I1 R1 81 380.2 18134756 99.7% 18080351 98.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,601,899 G→A D28N (GAC→AAC)  hyfB → hydrogenase 4 component B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,601,8990GA100.0% 1438.8 / NA 335D28N (GAC→AAC) hyfBhydrogenase 4 component B
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (183/152);  total (183/152)

Only 100 of 335 total aligned reads displayed.

ACTCAGGAGCAACGCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGGACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTT  >  NC_000913/2601801‑2601996
                                                                                                  |                                                                                                 
    aGGAGCAACGCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGAc                                                                                             >  1:4724466/1‑101 (MQ=255)
    aGGAGCAACGCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGAc                                                                                             >  1:4724469/1‑101 (MQ=255)
    aGGAGCAACGCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGAc                                                                                             <  1:4723504/101‑1 (MQ=255)
      gAGCAACGCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTg                                                                                           <  2:4724040/101‑1 (MQ=255)
        gCAACGCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGc                                                                                         >  2:4724473/1‑101 (MQ=255)
         cAACGCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCt                                                                                        >  1:4724475/1‑101 (MQ=255)
          aaCGCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTa                                                                                       >  1:4724480/1‑101 (MQ=255)
          aaCGCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTa                                                                                       <  2:4724415/101‑1 (MQ=255)
           aCGCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTAt                                                                                      >  2:4724482/1‑101 (MQ=255)
           aCGCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTAt                                                                                      <  1:4723916/101‑1 (MQ=255)
            cGCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTAtt                                                                                     <  2:4724183/101‑1 (MQ=255)
             gCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTa                                                                                    <  1:4724108/101‑1 (MQ=255)
             gCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTa                                                                                    <  1:4723675/101‑1 (MQ=255)
              cTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTaa                                                                                   >  2:4724488/1‑101 (MQ=255)
              cTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTaa                                                                                   >  1:4724487/1‑101 (MQ=255)
              cTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTaa                                                                                   <  1:4723872/101‑1 (MQ=255)
               tAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAg                                                                                  >  1:4724494/1‑101 (MQ=255)
                aaTGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGc                                                                                 <  1:4724134/101‑1 (MQ=255)
                   ggATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCttt                                                                              >  1:4724498/1‑101 (MQ=255)
                    gATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTc                                                                             >  2:4724500/1‑101 (MQ=255)
                     aTGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTcc                                                                            >  1:4724502/1‑101 (MQ=255)
                      tGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCg                                                                           <  2:4724124/101‑1 (MQ=255)
                      tGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCg                                                                           <  2:4723899/101‑1 (MQ=255)
                      tGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCg                                                                           >  2:4724505/1‑101 (MQ=255)
                         ccTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCa                                                                        >  1:4724512/1‑101 (MQ=255)
                         ccTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCa                                                                        >  2:4724511/1‑101 (MQ=255)
                           tGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATc                                                                      >  2:4724517/1‑101 (MQ=255)
                             cAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATcac                                                                    >  1:4724519/1‑101 (MQ=255)
                              aaTTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATcaca                                                                   <  2:4724006/101‑1 (MQ=255)
                              aaTTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATcaca                                                                   >  1:4724524/1‑101 (MQ=255)
                               attattAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACAt                                                                  <  2:4723988/101‑1 (MQ=255)
                               attattAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACAt                                                                  >  2:4724528/1‑101 (MQ=255)
                               attattAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACAt                                                                  >  1:4724527/1‑101 (MQ=255)
                                ttattaACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATc                                                                 >  1:4724533/1‑101 (MQ=255)
                                 tattaACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCg                                                                <  2:4724169/101‑1 (MQ=255)
                                  attaACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGc                                                               >  1:4724537/1‑101 (MQ=255)
                                   ttaACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCt                                                              <  2:4723890/101‑1 (MQ=255)
                                   ttaACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCt                                                              >  2:4724539/1‑101 (MQ=255)
                                     aaCCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCtgg                                                            <  2:4723948/101‑1 (MQ=255)
                                     aaCCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCtgg                                                            <  2:4724198/101‑1 (MQ=255)
                                     aaCCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCtgg                                                            >  2:4724544/1‑101 (MQ=255)
                                       ccTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCtg                                                             >  1:4724547/1‑98 (MQ=255)
                                        cTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCtggtgg                                                         >  2:4724548/1‑101 (MQ=255)
                                        cTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCtggtgg                                                         <  2:4724308/101‑1 (MQ=255)
                                           gTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGggcg                                                      >  1:4724555/1‑101 (MQ=255)
                                           gTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGggcg                                                      <  1:4723789/101‑1 (MQ=255)
                                           gTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCCGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTcc                                                                            >  2:4724556/1‑79 (MQ=255)
                                            tCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGggcgg                                                     <  2:4724060/101‑1 (MQ=255)
                                             cGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGggcggc                                                    >  2:4724562/1‑101 (MQ=255)
                                             cGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGggcggc                                                    <  1:4724069/101‑1 (MQ=255)
                                              gCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGgcggcg                                                   <  1:4724313/101‑1 (MQ=255)
                                              gCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGgcggcg                                                   <  1:4724045/101‑1 (MQ=255)
                                              gCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGgcggcg                                                   >  1:4724564/1‑101 (MQ=255)
                                                tGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTg                                                 >  2:4724567/1‑101 (MQ=255)
                                                 gATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGa                                                <  1:4724097/101‑1 (MQ=255)
                                                  aTTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGggcgg                                                     >  2:4724575/1‑95 (MQ=255)
                                                  aTTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGAt                                               >  1:4724573/1‑101 (MQ=255)
                                                    tctcTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTg                                             >  2:4724579/1‑101 (MQ=255)
                                                     ctctATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTgg                                            <  1:4723965/101‑1 (MQ=255)
                                                     ctctATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTgg                                            >  1:4724584/1‑101 (MQ=255)
                                                     ctctATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTgg                                            >  2:4724583/1‑101 (MQ=255)
                                                      tctATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGc                                           <  2:4724034/101‑1 (MQ=255)
                                                          tCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGcatca                                       >  1:4724588/1‑101 (MQ=255)
                                                            tGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCatcatc                                     >  2:4724593/1‑101 (MQ=255)
                                                             gTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCAtcatca                                    <  1:4723925/101‑1 (MQ=255)
                                                             gTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCAtcatca                                    <  2:4724071/101‑1 (MQ=255)
                                                             gTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCAtcatca                                    <  1:4724166/101‑1 (MQ=255)
                                                               ttGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGc                                  <  2:4723915/101‑1 (MQ=255)
                                                               ttGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGc                                  <  2:4723833/101‑1 (MQ=255)
                                                               ttGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGc                                  >  1:4724596/1‑101 (MQ=255)
                                                                tGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCg                                 <  1:4724224/101‑1 (MQ=255)
                                                                  cTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGa                               >  2:4724598/1‑101 (MQ=255)
                                                                   tAGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGaa                              >  2:4724602/1‑101 (MQ=255)
                                                                    aGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAAt                             >  1:4724604/1‑101 (MQ=255)
                                                                    aGTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAAt                             <  1:4724156/101‑1 (MQ=255)
                                                                     gTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAg                                                                                  >  1:4724608/1‑47 (MQ=255)
                                                                     gTCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAAtt                            <  1:4724016/101‑1 (MQ=255)
                                                                      tCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTa                           <  1:4724261/101‑1 (MQ=255)
                                                                      tCTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTa                           <  2:4723767/101‑1 (MQ=255)
                                                                       cTGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTAc                          <  1:4724000/101‑1 (MQ=255)
                                                                        tGGCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACg                         >  2:4724612/1‑101 (MQ=255)
                                                                          gCTTCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCa                       >  1:4724616/1‑101 (MQ=255)
                                                                             tCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAAtt                    <  1:4724028/101‑1 (MQ=255)
                                                                             tCGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCAGCGTGATTGGCATCATCAGCGGAATTACGCAAtt                    >  2:4724620/1‑101 (MQ=255)
                                                                              cGCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTa                   <  2:4723981/101‑1 (MQ=255)
                                                                               gCTGTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGc                                  >  1:4724622/1‑85 (MQ=255)
                                                                                  gTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATg               >  1:4724627/1‑101 (MQ=255)
                                                                                  gTTTTTACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGACATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATg               >  2:4724626/1‑101 (MQ=255)
                                                                                   tttttCCTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGAt                                               <  1:4724211/68‑1 (MQ=255)
                                                                                       tACTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGgt          >  1:4724633/1‑101 (MQ=255)
                                                                                        aCTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAAtt                    >  2:4724639/1‑90 (MQ=255)
                                                                                        aCTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGgtg         <  2:4724081/101‑1 (MQ=255)
                                                                                        aCTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGgtg         >  2:4724635/1‑101 (MQ=255)
                                                                                         cTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGgtgt        <  2:4724092/101‑1 (MQ=255)
                                                                                         cTCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGgtgt        >  1:4724641/1‑101 (MQ=255)
                                                                                          tCGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGca                                          <  1:4723980/66‑1 (MQ=255)
                                                                                           cGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTaa      <  2:4724252/101‑1 (MQ=255)
                                                                                           cGGTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTaa      <  1:4724283/101‑1 (MQ=255)
                                                                                            ggTCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAAc     <  2:4724146/101‑1 (MQ=255)
                                                                                              tCTGAACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACtt   >  1:4724646/1‑101 (MQ=255)
                                                                                                  |                                                                                                 
ACTCAGGAGCAACGCTAATGGATGCCCTGCAATTATTAACCTGGTCGCTGATTCTCTATCTGTTTGCTAGTCTGGCTTCGCTGTTTTTACTCGGTCTGGACAGACTGGCTATTAAGCTTTCCGGCATCACATCGCTGGTGGGCGGCGTGATTGGCATCATCAGCGGAATTACGCAATTACATGCTGGTGTAACTTT  >  NC_000913/2601801‑2601996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A