Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F13 I1 R1 81 380.2 18134756 99.7% 18080351 98.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,698,170 T→C E127E (GAA→GAG)  pgpC ← phosphatidylglycerophosphatase C

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,698,1700TC99.7% 1489.2 / ‑4.7 353E127E (GAA→GAG) pgpCphosphatidylglycerophosphatase C
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (174/178);  total (175/178)
Fisher's exact test for biased strand distribution p-value = 4.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01

Only 100 of 353 total aligned reads displayed.

AGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCGGAAAGGCGG  >  NC_000913/2698072‑2698267
                                                                                                  |                                                                                                 
 gACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCa                                                                                                <  2:4898279/101‑1 (MQ=255)
  aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCaa                                                                                               >  2:4898836/1‑101 (MQ=255)
  aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCaa                                                                                               <  2:4898332/101‑1 (MQ=255)
    aaCGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAAcc                                                                                             >  2:4898840/1‑101 (MQ=255)
      cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAg                                                                                           <  2:4898197/101‑1 (MQ=255)
      cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAg                                                                                           >  1:4898841/1‑101 (MQ=255)
         aTCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCgg                                                                                        >  2:4898847/1‑101 (MQ=255)
           cGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCt                                                                                      >  2:4898850/1‑101 (MQ=255)
           cGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCt                                                                                      <  2:4898294/101‑1 (MQ=255)
              cAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCg                                                                                   <  2:4898212/101‑1 (MQ=255)
              cAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCg                                                                                   <  2:4898562/101‑1 (MQ=255)
               aaTACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCgg                                                                                  >  2:4898859/1‑101 (MQ=255)
               aaTACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCgg                                                                                  >  1:4898861/1‑101 (MQ=255)
               aaTACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCgg                                                                                  >  1:4898857/1‑101 (MQ=255)
                aTACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGga                                                                                 <  2:4898462/101‑1 (MQ=255)
                   cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGagag                                                                              >  2:4898868/1‑101 (MQ=255)
                   cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGagag                                                                              <  1:4898398/101‑1 (MQ=255)
                    ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGc                                                                             >  1:4898869/1‑101 (MQ=255)
                     cAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGcc                                                                            <  1:4898137/101‑1 (MQ=255)
                     cAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGcc                                                                            <  1:4898597/101‑1 (MQ=255)
                      aaCCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCg                                                                           <  2:4898525/101‑1 (MQ=255)
                      aaCCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCg                                                                           >  1:4898873/1‑101 (MQ=255)
                       accaccATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCgg                                                                          <  2:4898643/101‑1 (MQ=255)
                           ccaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAAt                                                                      <  2:4898371/101‑1 (MQ=255)
                            caTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATc                                                                     <  1:4898164/101‑1 (MQ=255)
                            caTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATc                                                                     >  2:4898879/1‑101 (MQ=255)
                             aTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCa                                                                    >  1:4898882/1‑101 (MQ=255)
                              tAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGc                                                                             >  2:4898884/1‑91 (MQ=255)
                                 ccACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCa                                                                >  1:4898888/1‑101 (MQ=255)
                                    cGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGat                                                             <  2:4898509/101‑1 (MQ=255)
                                    cGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGat                                                             <  2:4898250/101‑1 (MQ=255)
                                     gCTGAATTTGGCTGGCGATAAGATTAGCCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGata                                                            >  2:4898894/1‑101 (MQ=255)
                                     gCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGata                                                            >  1:4898896/1‑101 (MQ=255)
                                       tGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGgag                                                                                >  1:4898900/1‑79 (MQ=255)
                                       tGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCa                                                                    <  2:4898618/91‑1 (MQ=255)
                                        gAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCa                                                         >  2:4898901/1‑101 (MQ=255)
                                        gAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCa                                                         <  1:4898410/101‑1 (MQ=255)
                                        gAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCa                                                         <  2:4898778/101‑1 (MQ=255)
                                         aaTTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAg                                                        <  2:4898266/101‑1 (MQ=255)
                                           tttGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCa                                                      >  1:4898907/1‑101 (MQ=255)
                                            ttGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCAt                                                     <  2:4898149/101‑1 (MQ=255)
                                             tggctggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATc                                                    <  1:4898199/101‑1 (MQ=255)
                                              ggctggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCg                                                   <  2:4898392/101‑1 (MQ=255)
                                              ggctggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCg                                                   >  2:4898912/1‑101 (MQ=255)
                                              ggctggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCg                                                   >  1:4898913/1‑101 (MQ=255)
                                                ctggcGATAAGATTACCCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGa                                                 <  2:4898425/101‑1 (MQ=255)
                                                 tggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGaa                                                >  1:4898919/1‑101 (MQ=255)
                                                  ggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAAc                                               >  2:4898920/1‑101 (MQ=255)
                                                    cGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACtt                                             <  1:4898298/101‑1 (MQ=255)
                                                     gATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCgg                                                                          >  1:4898926/1‑71 (MQ=255)
                                                      aTAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTaa                                           >  2:4898927/1‑101 (MQ=255)
                                                       tAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAAc                                          >  1:4898930/1‑101 (MQ=255)
                                                         aGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACag                                        <  1:4898538/101‑1 (MQ=255)
                                                             tAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACaggtag                                    <  2:4898096/101‑1 (MQ=255)
                                                             tAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACaggtag                                    >  1:4898935/1‑101 (MQ=255)
                                                              aaCCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAAc                                               <  2:4898472/89‑1 (MQ=255)
                                                              aaCCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACaggtagg                                   <  1:4898785/101‑1 (MQ=255)
                                                               aCCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACaggtaggt                                  >  1:4898940/1‑101 (MQ=255)
                                                               aCCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACaggtaggt                                  >  2:4898941/1‑101 (MQ=255)
                                                                 ccGCGGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAggtgg                                >  2:4898945/1‑101 (MQ=255)
                                                                   gcgGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGtt                              >  1:4898950/1‑101 (MQ=255)
                                                                   gcgGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGtt                              >  2:4898953/1‑101 (MQ=255)
                                                                    cgGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTa                             <  2:4898229/101‑1 (MQ=255)
                                                                    cgGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTa                             <  1:4898225/101‑1 (MQ=255)
                                                                    cgGCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTa                             >  1:4898956/1‑101 (MQ=255)
                                                                     ggCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTaa                            <  1:4898480/101‑1 (MQ=255)
                                                                      gCAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAAt                           <  1:4898458/101‑1 (MQ=255)
                                                                       cAGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATc                          >  1:4898961/1‑101 (MQ=255)
                                                                        aGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCg                         <  2:4898358/101‑1 (MQ=255)
                                                                        aGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCg                         <  2:4898697/101‑1 (MQ=255)
                                                                        aGCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCg                         >  2:4898963/1‑101 (MQ=255)
                                                                         gCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGc                        >  1:4898968/1‑101 (MQ=255)
                                                                         gCCAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGc                        <  1:4898341/101‑1 (MQ=255)
                                                                          ccAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCt                       >  2:4898969/1‑101 (MQ=255)
                                                                           cAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCa                                                         <  1:4898021/66‑1 (MQ=255)
                                                                           cAGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTc                      <  1:4898313/101‑1 (MQ=255)
                                                                            aGGGCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTcc                     >  2:4898975/1‑101 (MQ=255)
                                                                              ggCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTg                   >  1:4898978/1‑101 (MQ=255)
                                                                              ggCGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTg                   <  1:4898302/101‑1 (MQ=255)
                                                                                cGTATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGaa                 <  1:4898275/101‑1 (MQ=255)
                                                                                  tATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAAcc               >  2:4898981/1‑101 (MQ=255)
                                                                                  tATCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAAcc               >  1:4898983/1‑101 (MQ=255)
                                                                                   aTCGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCa              >  2:4898986/1‑101 (MQ=255)
                                                                                     cGAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGc            <  1:4898566/101‑1 (MQ=255)
                                                                                      gAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCg           <  1:4898648/101‑1 (MQ=255)
                                                                                      gAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCg           >  1:4898990/1‑101 (MQ=255)
                                                                                      gAAATAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCg           <  1:4898426/101‑1 (MQ=255)
                                                                                       aaaTAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCgg          <  2:4898263/101‑1 (MQ=255)
                                                                                       aaaTAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCgg          <  1:4898349/101‑1 (MQ=255)
                                                                                         aTAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCGGaa        >  1:4898997/1‑101 (MQ=255)
                                                                                         aTAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCGGaa        <  2:4898454/101‑1 (MQ=255)
                                                                                         aTAAACCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCGGaa        >  2:4898996/1‑101 (MQ=255)
                                                                                           aaaCCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCGGAAAg      <  1:4898327/101‑1 (MQ=255)
                                                                                           aaaCCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCGGAAAg      <  2:4898830/101‑1 (MQ=255)
                                                                                           aaaCCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCGGAAAg      <  1:4898436/101‑1 (MQ=255)
                                                                                            aaCCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCGGAAAgg     >  2:4899001/1‑101 (MQ=255)
                                                                                            aaCCGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCGGAAAgg     <  2:4898315/101‑1 (MQ=255)
                                                                                              ccGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACaggtag                                    <  1:4898501/68‑1 (MQ=255)
                                                                                              ccGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCGGAAAGGCg   >  1:4899008/1‑101 (MQ=255)
                                                                                              ccGCCTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCGGAAAGGCg   >  2:4899007/1‑101 (MQ=255)
                                                                                                  |                                                                                                 
AGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAGAGCCGGTAATCAACCAGATATCAGCATCGGAACTTAACAGGTAGGTGGTTAATCGCTCCTGAACCAGCGGAAAGGCGG  >  NC_000913/2698072‑2698267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A