Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F13 I1 R1 112 360.8 17302090 99.7% 17250183 98.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,515,635 (T)7→6 intergenic (+192/+8) insL‑3 → / ← pdeA putative IS186/IS421 transposase/putative c‑di‑GMP phosphodiesterase PdeA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,515,6290T.100.0% 1899.3 / NA 357intergenic (+186/+14)insL‑3/pdeAputative IS186/IS421 transposase/putative c‑di‑GMP phosphodiesterase PdeA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (167/190);  total (167/190)

Only 100 of 395 total aligned reads displayed.

CAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCT  >  NC_000913/2515529‑2515725
                                                                                                    |                                                                                                
  aTTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttt                                                                                                >  2:4679761/1‑101 (MQ=40)
   ttGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttt                                                                                               <  2:4679142/101‑1 (MQ=255)
   ttGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttt                                                                                               <  1:4679209/101‑1 (MQ=255)
      aagaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttttta                                                                                            <  1:4679115/101‑2 (MQ=255)
      aagaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttttta                                                                                            >  2:4679769/1‑100 (MQ=255)
       agaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttttttac                                                                                           <  2:4679200/101‑3 (MQ=255)
       agaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttttttac                                                                                           >  1:4679770/1‑99 (MQ=255)
           cgcgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCt                                                                                      <  2:4679176/101‑1 (MQ=255)
           cgcgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCt                                                                                      <  1:4679518/101‑1 (MQ=255)
            gcgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttttttac                                                                                           >  1:4679777/1‑94 (MQ=255)
              gAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGtt                                                                                   >  2:4679783/1‑101 (MQ=255)
               aGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTa                                                                                  >  2:4679786/1‑101 (MQ=255)
               aGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTa                                                                                  <  1:4679382/101‑1 (MQ=255)
                  cATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTTAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATc                                                                               >  1:4679789/1‑101 (MQ=255)
                  cATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATc                                                                               <  2:4679415/101‑1 (MQ=255)
                   aTCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCa                                                                              >  2:4679796/1‑101 (MQ=255)
                   aTCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCa                                                                              >  1:4679797/1‑101 (MQ=255)
                     cGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGc                                                                            <  1:4678934/101‑1 (MQ=255)
                       tCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTa                                                                          <  2:4679230/101‑1 (MQ=255)
                       tCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTa                                                                          >  1:4679805/1‑101 (MQ=255)
                       tCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTa                                                                          <  1:4679272/101‑1 (MQ=255)
                         ttAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAAt                                                                        >  2:4679809/1‑101 (MQ=255)
                          tAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATg                                                                       >  1:4679811/1‑101 (MQ=255)
                           aaCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATgg                                                                      >  1:4679815/1‑101 (MQ=255)
                              gAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTg                                                                   >  2:4679820/1‑101 (MQ=255)
                                ggCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCg                                                                 <  1:4679595/101‑1 (MQ=255)
                                 gCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCgg                                                                >  1:4679824/1‑101 (MQ=255)
                                  cACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCggg                                                               <  2:4679313/101‑1 (MQ=255)
                                   aCCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGc                                                              >  1:4679829/1‑101 (MQ=255)
                                    ccGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCg                                                             >  2:4679834/1‑101 (MQ=255)
                                     cGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCg                                                                 <  1:4679333/96‑1 (MQ=255)
                                     cGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGa                                                            >  1:4679835/1‑101 (MQ=255)
                                      gAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGAc                                                           >  2:4679839/1‑101 (MQ=255)
                                       aGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGAcc                                                          <  1:4679322/101‑1 (MQ=255)
                                        ggCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCa                                                         >  1:4679841/1‑101 (MQ=255)
                                        ggCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCa                                                         <  1:4679451/101‑1 (MQ=255)
                                         gCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCaa                                                        <  1:4679399/101‑1 (MQ=255)
                                         gCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCaa                                                        <  2:4679464/101‑1 (MQ=255)
                                          cGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGc                                                                  <  1:4679504/90‑1 (MQ=255)
                                           gTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATc                                                      <  2:4679375/101‑1 (MQ=255)
                                             cGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCaa                                                    >  2:4679847/1‑101 (MQ=255)
                                               cATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAAt                                                  >  1:4679852/1‑101 (MQ=255)
                                               cATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAAt                                                  <  1:4678859/101‑1 (MQ=255)
                                                aTTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATa                                                 <  1:4679161/101‑1 (MQ=255)
                                                aTTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATa                                                 >  2:4679853/1‑101 (MQ=255)
                                                 ttcttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAc                                                <  1:4679175/101‑1 (MQ=255)
                                                 ttcttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAc                                                <  1:4679732/101‑1 (MQ=255)
                                                     tcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCtt                                            <  2:4679259/101‑1 (MQ=255)
                                                     tcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCtt                                            >  1:4679857/1‑101 (MQ=255)
                                                      cAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTg                                           <  2:4679424/101‑1 (MQ=255)
                                                       aGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAcc                                               <  1:4679232/96‑1 (MQ=255)
                                                       aGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGc                                          >  2:4679862/1‑101 (MQ=255)
                                                        gATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCa                                         <  2:4679153/101‑1 (MQ=255)
                                                          tGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGa                                       <  2:4679114/101‑1 (MQ=255)
                                                          tGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGa                                       >  2:4679868/1‑101 (MQ=255)
                                                            gTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGata                                     >  1:4679871/1‑101 (MQ=255)
                                                            gTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGata                                     <  1:4679251/101‑1 (MQ=255)
                                                            gTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGata                                     <  2:4679018/101‑1 (MQ=255)
                                                              tCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATAtt                                   <  2:4679299/101‑1 (MQ=255)
                                                                aaCCCTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGc                                 >  2:4679875/1‑101 (MQ=255)
                                                                  cccTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCAc                               >  1:4679878/1‑101 (MQ=255)
                                                                   ccTTAAGTTAGCGCTTATGGGATAATTCCCCGGttttttac                                                                                           <  1:4679237/41‑3 (MQ=255)
                                                                   ccTTAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCAcc                              >  1:4679883/1‑101 (MQ=255)
                                                                     ttAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCAcccc                            >  1:4679888/1‑101 (MQ=255)
                                                                     ttAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCAcccc                            <  1:4679492/101‑1 (MQ=255)
                                                                      tAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCg                           <  2:4679334/101‑1 (MQ=255)
                                                                      tAAGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCg                           >  2:4679889/1‑101 (MQ=255)
                                                                        aGTTAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAg                         >  1:4679895/1‑101 (MQ=255)
                                                                           tAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCtt                      >  2:4679901/1‑101 (MQ=255)
                                                                           tAGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCtt                      >  1:4679900/1‑101 (MQ=255)
                                                                            aGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTa                     <  2:4679207/101‑1 (MQ=255)
                                                                            aGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTa                     <  2:4679403/101‑1 (MQ=255)
                                                                            aGCGCTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTa                     <  1:4679145/101‑1 (MQ=255)
                                                                              cgcTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATg                   <  2:4679778/101‑1 (MQ=255)
                                                                              cgcTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATg                   >  2:4679908/1‑101 (MQ=255)
                                                                              cgcTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATg                   >  1:4679909/1‑101 (MQ=255)
                                                                               gcTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGc                  <  1:4679027/101‑1 (MQ=255)
                                                                               gcTTATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGc                  <  1:4679763/101‑1 (MQ=255)
                                                                                 ttATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCaa                >  2:4679916/1‑101 (MQ=255)
                                                                                 ttATGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCaa                <  1:4679435/101‑1 (MQ=255)
                                                                                   aTGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATa              <  2:4679358/101‑1 (MQ=255)
                                                                                   aTGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATa              <  1:4679295/101‑1 (MQ=255)
                                                                                   aTGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATa              >  2:4679920/1‑101 (MQ=255)
                                                                                   aTGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATa              >  1:4679921/1‑101 (MQ=255)
                                                                                    tGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAg             <  1:4679532/101‑1 (MQ=255)
                                                                                    tGGGATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAg             <  1:4679349/101‑1 (MQ=255)
                                                                                     gggATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAgc            <  1:4679242/101‑1 (MQ=255)
                                                                                     gggATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAgc            <  2:4679499/101‑1 (MQ=255)
                                                                                      ggATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAgcg           <  1:4679284/101‑1 (MQ=255)
                                                                                       gATAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAgcgc          <  2:4679281/101‑1 (MQ=255)
                                                                                         tAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCct        >  2:4679928/1‑101 (MQ=255)
                                                                                         tAATTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCct        <  2:4679070/101‑1 (MQ=255)
                                                                                          aaTTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCctg       >  1:4679931/1‑101 (MQ=255)
                                                                                           aTTCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCctgc      >  2:4679934/1‑101 (MQ=255)
                                                                                             tCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCctgctg    <  2:4679546/101‑1 (MQ=255)
                                                                                             tCCCCGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCctgctg    >  2:4679940/1‑101 (MQ=255)
                                                                                              ccccGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAg                         <  1:4679367/79‑1 (MQ=255)
                                                                                              ccccGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCctgctgc   <  1:4679416/101‑1 (MQ=255)
                                                                                               cccGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCctgctgct  >  1:4679942/1‑101 (MQ=255)
                                                                                               cccGG‑TTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCctgctgct  <  2:4679618/101‑1 (MQ=255)
                                                                                                    |                                                                                                
CAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCT  >  NC_000913/2515529‑2515725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A