Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F13 I1 R1	112	360.8	17302090	99.7%	17250183	98.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,603,973	C→T	R43C (CGC→TGC)	hyfC →	hydrogenase 4 component C

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,603,973	0	C	T	99.7%	1268.9 / ‑5.6	299	R43C (CGC→TGC)	hyfC	hydrogenase 4 component C
Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (131/167); total (131/168)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 314 total aligned reads displayed.

TGGTCATTTTTGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCCGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGATGTTCCGCCTGAT  >  NC_000913/2603875‑2604070

tGGTCATTTTTGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCcgctgc                                                                                                 >  1:4838550/1‑101 (MQ=255)

 ggTCATTTTTGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCtgcg                                                                                                <  1:4838031/101‑1 (MQ=255)

 ggTCATTTTTGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCtgcg                                                                                                <  1:4838121/101‑1 (MQ=255)

    cATTTTTGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGc                                                                                             <  2:4837937/101‑1 (MQ=255)

    cATTTTTGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGc                                                                                             >  1:4838553/1‑101 (MQ=255)

     aTTTTTGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGcc                                                                                            <  1:4838237/101‑1 (MQ=255)

     aTTTTTGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGcc                                                                                            <  2:4838325/101‑1 (MQ=255)

     aTTTTTGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGcc                                                                                            <  2:4838069/101‑1 (MQ=255)

      tttttGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCg                                                                                           >  2:4838556/1‑101 (MQ=255)

        tttGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCggg                                                                                         <  1:4838175/101‑1 (MQ=255)

        tttGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCggg                                                                                         <  1:4838006/101‑1 (MQ=255)

         ttGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCgggg                                                                                        <  1:4838186/101‑1 (MQ=255)

          tGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGa                                                                                       <  1:4838077/101‑1 (MQ=255)

          tGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGa                                                                                       >  2:4838560/1‑101 (MQ=255)

          tGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGa                                                                                       <  1:4837952/101‑1 (MQ=255)

           gCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGAt                                                                                      <  1:4838064/101‑1 (MQ=255)

            cGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATc                                                                                     <  2:4838092/101‑1 (MQ=255)

              ttAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTg                                                                                   >  2:4838563/1‑101 (MQ=255)

              ttAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTg                                                                                   >  1:4838564/1‑101 (MQ=255)

                aGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGc                                                                                 >  2:4838569/1‑101 (MQ=255)

                  cacaGGCCTTGATTCTGCTGGTGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAg                                                                               >  1:4838571/1‑101 (MQ=255)

                  cacaGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAg                                                                               <  2:4838113/101‑1 (MQ=255)

                   acaGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAgg                                                                              >  2:4838573/1‑101 (MQ=255)

                   acaGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAgg                                                                              <  1:4837766/101‑1 (MQ=255)

                    caGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTg                                                                                   <  2:4837986/95‑1 (MQ=255)

                     aGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGAt                                                                            <  2:4837914/101‑1 (MQ=255)

                      ggCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAgg                                                                              <  1:4837946/98‑1 (MQ=255)

                        ccGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTAt                                                                         >  1:4838577/1‑101 (MQ=255)

                         cGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATc                                                                        <  1:4838144/101‑1 (MQ=255)

                          gTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCa                                                                                <  1:4838091/92‑1 (MQ=255)

                           tGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATcgc                                                                      <  1:4838160/101‑1 (MQ=255)

                            gATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATcgcg                                                                     >  1:4838582/1‑101 (MQ=255)

                            gATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATcgcg                                                                     <  2:4838172/101‑1 (MQ=255)

                            gATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATcgcg                                                                     >  2:4838583/1‑101 (MQ=255)

                              ttCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGat                                                                   <  1:4837439/101‑1 (MQ=255)

                               tCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGata                                                                  <  1:4838102/101‑1 (MQ=255)

                               tCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGata                                                                  <  1:4837836/101‑1 (MQ=255)

                                ctgctgATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGatat                                                                 >  2:4838589/1‑101 (MQ=255)

                                 tgctgATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATc                                                                >  1:4838591/1‑101 (MQ=255)

                                 tgctgATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATc                                                                <  2:4838003/101‑1 (MQ=255)

                                   ctgATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCca                                                              <  2:4837446/101‑1 (MQ=255)

                                    tgATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCcac                                                             <  2:4838188/101‑1 (MQ=255)

                                      aTGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACaa                                                           >  1:4838596/1‑101 (MQ=255)

                                       tGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACaaa                                                          >  1:4838599/1‑101 (MQ=255)

                                        gCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAAc                                                         <  2:4838097/101‑1 (MQ=255)

                                         cTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACt                                                        >  2:4838600/1‑101 (MQ=255)

                                         cTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACt                                                        <  2:4837877/101‑1 (MQ=255)

                                          tAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTg                                                       >  1:4838606/1‑101 (MQ=255)

                                          tAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTg                                                       >  2:4838604/1‑101 (MQ=255)

                                           aaCCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGt                                                      <  1:4837723/101‑1 (MQ=255)

                                             ccccACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGttt                                                    >  2:4838611/1‑101 (MQ=255)

                                             ccccACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGttt                                                    <  2:4838262/101‑1 (MQ=255)

                                             ccccACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGttt                                                    <  1:4838218/101‑1 (MQ=255)

                                               ccACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTaa                                                  <  2:4838235/101‑1 (MQ=255)

                                                cACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTaaa                                                 <  2:4838012/101‑1 (MQ=255)

                                                  cTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACACACTGTTTAAACg                                               >  1:4838612/1‑101 (MQ=255)

                                                  cTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACg                                               <  2:4838226/101‑1 (MQ=255)

                                                  cTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATAGCGATATCCACAAACTGTTTAAACg                                               <  1:4838053/101‑1 (MQ=255)

                                                   tttttACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTaaa                                                 <  2:4838073/98‑1 (MQ=255)

                                                    ttttACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGcc                                             <  2:4838140/101‑1 (MQ=255)

                                                     tttACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCa                                            <  2:4838426/101‑1 (MQ=255)

                                                     tttACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCa                                            >  1:4838615/1‑101 (MQ=255)

                                                      ttACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACg                                               >  2:4838618/1‑97 (MQ=255)

                                                       tACGTGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAgg                                          >  1:4838622/1‑101 (MQ=255)

                                                         cGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGaa                                        <  1:4837890/101‑1 (MQ=255)

                                                          gggTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAg                                       <  2:4838210/101‑1 (MQ=255)

                                                          gggTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAg                                       <  2:4838279/101‑1 (MQ=255)

                                                          gggTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAg                                       <  2:4838038/101‑1 (MQ=255)

                                                           ggTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGt                                      >  1:4838627/1‑101 (MQ=255)

                                                            gTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGtt                                     <  1:4837960/101‑1 (MQ=255)

                                                               tttCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTgcg                                  >  1:4838630/1‑101 (MQ=255)

                                                                ttCCCGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTgcgc                                 >  2:4838631/1‑101 (MQ=255)

                                                                  cccGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCg                               >  2:4838637/1‑101 (MQ=255)

                                                                  cccGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCg                               >  1:4838636/1‑101 (MQ=255)

                                                                   ccGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGa                              >  1:4838641/1‑101 (MQ=255)

                                                                    cGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTgcgc                                 >  2:4838645/1‑97 (MQ=255)

                                                                    cGGCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGAc                             <  1:4838169/101‑1 (MQ=255)

                                                                      gCAGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACAt                           >  1:4838647/1‑101 (MQ=255)

                                                                       cAGATACGCGCGAGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATc                                                                        <  2:4838052/55‑1 (MQ=255)

                                                                        aGATACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATGGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCt                         >  2:4838652/1‑101 (MQ=255)

                                                                          aTACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTc                       >  2:4838655/1‑101 (MQ=255)

                                                                           tACGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCa                      >  2:4838658/1‑101 (MQ=255)

                                                                            aCGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAgg                                                                              <  1:4838249/44‑1 (MQ=255)

                                                                            aCGCGCGCGTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACaaa                                                          >  2:4838661/1‑64 (MQ=255)

                                                                             cgcgcgcgTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAgg                    >  1:4838663/1‑101 (MQ=255)

                                                                              gcgcgcgTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGt                   >  2:4838666/1‑101 (MQ=255)

                                                                               cgcgcgTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTc                  <  1:4838211/101‑1 (MQ=255)

                                                                                  gcgTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGa               >  1:4838669/1‑101 (MQ=255)

                                                                                  gcgTATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGa               >  1:4838672/1‑101 (MQ=255)

                                                                                     tATGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATGTCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGATGt            >  1:4838677/1‑101 (MQ=255)

                                                                                      aTGCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGATGtt           <  1:4838018/101‑1 (MQ=255)

                                                                                        gCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGATGTTcc         <  2:4838147/101‑1 (MQ=255)

                                                                                        gCACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGATGTTcc         <  1:4838264/101‑1 (MQ=255)

                                                                                         cACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGATGTTCCg        <  1:4838372/101‑1 (MQ=255)

                                                                                         cACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGATGTTCCg        <  1:4838199/101‑1 (MQ=255)

                                                                                         cACTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGATGTTCCg        >  2:4838679/1‑101 (MQ=255)

                                                                                          aCTCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGATGTTCCGc       >  1:4838681/1‑101 (MQ=255)

                                                                                            tCCCGCTGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGATGTTCCGCCt     <  1:4838307/101‑1 (MQ=255)

                                                                                               cgctgcGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGATGTTCCGCCTGAt  <  2:4838352/101‑1 (MQ=255)

                                                                                               cgctgcGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGATGTTCCGCCTGAt  <  1:4838469/101‑1 (MQ=255)

TGGTCATTTTTGCGTTAGCACAGGCCGTGATTCTGCTGATGCTAACCCCACTTTTTACGGGTATTTCCCGGCAGATACGCGCGCGTATGCACTCCCGCCGCGGGCCGGGGATCTGGCAGGATTATCGCGATATCCACAAACTGTTTAAACGCCAGGAAGTTGCGCCGACATCTTCAGGTCTGATGTTCCGCCTGAT  >  NC_000913/2603875‑2604070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A