Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F13 I1 R1 112 360.8 17302090 99.7% 17250183 98.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,827,816 A→G Y27C (TAT→TGT)  srlD → sorbitol‑6‑phosphate 2‑dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,827,8160AG100.0% 1498.4 / NA 374Y27C (TAT→TGT) srlDsorbitol‑6‑phosphate 2‑dehydrogenase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (163/211);  total (163/211)

Only 100 of 377 total aligned reads displayed.

ATCTGTTAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTATCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGAAAGTATGGCGTACGGTTTTGGT  >  NC_000913/2827718‑2827913
                                                                                                  |                                                                                                 
aTCTGTTAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGtc                                                                                                 >  1:5243337/1‑101 (MQ=255)
 tCTGTTAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGtcg                                                                                                <  2:5242585/101‑1 (MQ=255)
 tCTGTTAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGtcg                                                                                                >  2:5243340/1‑101 (MQ=255)
   tGTTAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGtcgcg                                                                                              <  2:5242869/101‑1 (MQ=255)
   tGTTAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGtcgcg                                                                                              >  1:5243346/1‑101 (MQ=255)
    gTTAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGtcgcg                                                                                              >  2:5243348/1‑100 (MQ=255)
     ttAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGtcgcgtc                                                                                            <  2:5242891/101‑1 (MQ=255)
     ttAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGtcgcgtc                                                                                            <  1:5242793/101‑1 (MQ=255)
     ttAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGtcgcgtc                                                                                            <  1:5242810/101‑1 (MQ=255)
      tAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGtcgcgtcg                                                                                           >  2:5243354/1‑101 (MQ=255)
      tAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGtcgcgtcg                                                                                           >  1:5243352/1‑101 (MQ=255)
      tAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGtcgcgtcg                                                                                           <  2:5243199/101‑1 (MQ=255)
       aaGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTgtcgcgtcgc                                                                                          >  1:5243359/1‑101 (MQ=255)
       aaGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTgtcgcgtcgc                                                                                          >  2:5243361/1‑101 (MQ=255)
            gTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTg                                                                                     >  1:5243366/1‑101 (MQ=255)
             tAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGt                                                                                    >  1:5243371/1‑101 (MQ=255)
             tAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGt                                                                                    <  2:5242963/101‑1 (MQ=255)
                 aaaTGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGat                                                                                <  2:5242881/101‑1 (MQ=255)
                 aaaTGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGat                                                                                <  1:5242819/101‑1 (MQ=255)
                  aaTGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGata                                                                               <  1:5242932/101‑1 (MQ=255)
                  aaTGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGata                                                                               >  2:5243375/1‑101 (MQ=255)
                    tGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATAtt                                                                             >  2:5243380/1‑101 (MQ=255)
                     gAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTc                                                                            >  1:5243384/1‑101 (MQ=255)
                     gAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTc                                                                            <  2:5242951/101‑1 (MQ=255)
                      aaTCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCa                                                                           >  2:5243385/1‑101 (MQ=255)
                       aTCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCag                                                                          <  1:5242880/101‑1 (MQ=255)
                        tCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCaga                                                                         <  2:5242830/101‑1 (MQ=255)
                        tCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCaga                                                                         >  2:5243391/1‑101 (MQ=255)
                        tCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCaga                                                                         <  1:5242985/101‑1 (MQ=255)
                         cAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCagag                                                                        >  2:5243395/1‑101 (MQ=255)
                         cAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCagag                                                                        <  1:5242773/101‑1 (MQ=255)
                         cAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCagag                                                                        <  1:5242894/101‑1 (MQ=255)
                          aGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCaga                                                                         <  1:5242920/99‑1 (MQ=255)
                          aGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGc                                                                       <  2:5242789/101‑1 (MQ=255)
                          aGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGc                                                                       <  1:5242536/101‑1 (MQ=255)
                          aGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGc                                                                       >  1:5243396/1‑101 (MQ=255)
                             ttGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGAc                                                                    >  1:5243402/1‑101 (MQ=255)
                             ttGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGAc                                                                    >  2:5243404/1‑101 (MQ=255)
                              tGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACa                                                                   >  2:5243408/1‑101 (MQ=255)
                               gCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACaa                                                                  >  1:5243414/1‑101 (MQ=255)
                                ccGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACaaa                                                                 <  1:5242622/101‑1 (MQ=255)
                                 cGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAg                                                                >  2:5243420/1‑101 (MQ=255)
                                 cGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAg                                                                <  2:5242633/101‑1 (MQ=255)
                                  gTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGc                                                               <  1:5242998/101‑1 (MQ=255)
                                   ttGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGcc                                                              >  2:5243426/1‑101 (MQ=255)
                                   ttGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGcc                                                              <  2:5242543/101‑1 (MQ=255)
                                   ttGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGcc                                                              >  1:5243425/1‑101 (MQ=255)
                                    tGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACaaa                                                                 <  1:5243112/97‑1 (MQ=255)
                                    tGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCg                                                             >  2:5243431/1‑101 (MQ=255)
                                    tGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCg                                                             <  1:5242908/101‑1 (MQ=255)
                                     gTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGc                                                            <  2:5242745/101‑1 (MQ=255)
                                       cATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCaa                                                          <  2:5243015/101‑1 (MQ=255)
                                        aTCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCaaa                                                         <  2:5242414/101‑1 (MQ=255)
                                        aTCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCaaa                                                         <  1:5242866/101‑1 (MQ=255)
                                        aTCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCaaa                                                         >  1:5243437/1‑101 (MQ=255)
                                         tCGGTGGTGGTCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAAt                                                        <  2:5242795/101‑1 (MQ=255)
                                          cGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAAtg                                                       <  2:5243097/101‑1 (MQ=255)
                                           ggtggtGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAAtgt                                                      >  2:5243441/1‑101 (MQ=255)
                                           ggtggtGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAAtgt                                                      <  2:5242907/101‑1 (MQ=255)
                                           ggtggtGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAAtgt                                                      >  1:5243440/1‑101 (MQ=255)
                                           ggtggtGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAAtg                                                       >  2:5243444/1‑100 (MQ=255)
                                            gtggtgGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAAtgtg                                                     <  1:5243056/101‑1 (MQ=255)
                                              ggtggGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGc                                                   >  2:5243451/1‑101 (MQ=255)
                                                  ggCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACaa                                               >  1:5243456/1‑101 (MQ=255)
                                                  ggCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACaa                                               <  1:5242734/101‑1 (MQ=255)
                                                   gCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAg                                              >  2:5243457/1‑101 (MQ=255)
                                                     aaaCCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGaa                                            <  2:5242709/101‑1 (MQ=255)
                                                       aCCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGAc                                                                    >  2:5243464/1‑75 (MQ=255)
                                                        ccTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAAtt                                         <  1:5242946/101‑1 (MQ=255)
                                                         cTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTa                                        <  1:5243143/101‑1 (MQ=255)
                                                         cTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTa                                        <  1:5242834/101‑1 (MQ=255)
                                                         cTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTa                                        >  1:5243465/1‑101 (MQ=255)
                                                         cTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTa                                        <  2:5242982/101‑1 (MQ=255)
                                                          ttAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTaa                                       <  1:5242723/101‑1 (MQ=255)
                                                           tAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAAc                                      <  1:5243021/101‑1 (MQ=255)
                                                             ggCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGc                                    <  1:5242695/101‑1 (MQ=255)
                                                                gcgTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGa                                 >  2:5243471/1‑101 (MQ=255)
                                                                gcgTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGa                                 <  2:5243045/101‑1 (MQ=255)
                                                                gcgTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGa                                 >  1:5243473/1‑101 (MQ=255)
                                                                   ttCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAata                              <  2:5243068/101‑1 (MQ=255)
                                                                    tCCTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAatat                             <  2:5242942/101‑1 (MQ=255)
                                                                     ccTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATg                            >  1:5243478/1‑101 (MQ=255)
                                                                      cTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGaa                                <  1:5242860/96‑1 (MQ=255)
                                                                      cTGTGCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATgg                           <  1:5242641/101‑1 (MQ=255)
                                                                       tgtgCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGt                          >  2:5243480/1‑101 (MQ=255)
                                                                         tgCCACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGc                                                               >  1:5243483/1‑62 (MQ=255)
                                                                           ccACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGaaa                      <  1:5242488/101‑1 (MQ=255)
                                                                           ccACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGaaa                      <  1:5242965/101‑1 (MQ=255)
                                                                            cACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGAAAg                     <  2:5243117/101‑1 (MQ=255)
                                                                            cACGGTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGAAAg                     <  2:5242931/101‑1 (MQ=255)
                                                                               ggTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGAAAGTa                   >  2:5243492/1‑100 (MQ=255)
                                                                               ggTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGAAAGTAt                  <  2:5243084/101‑1 (MQ=255)
                                                                               ggTCTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGAAAGTAt                  >  1:5243490/1‑101 (MQ=255)
                                                                                  cTGGCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGAAAGTATGGc               <  2:5242996/101‑1 (MQ=255)
                                                                                     gCTGCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGAAAGTATGGCGTa            >  1:5243497/1‑101 (MQ=255)
                                                                                        gCCGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGAAAGTATGGCGTACgg         <  2:5242669/101‑1 (MQ=255)
                                                                                         ccGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGAAAGTATGGCGTACGGt        >  2:5243501/1‑101 (MQ=255)
                                                                                          cGAGGGGTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGAAAGTATGGCGTACGGtt       >  1:5243502/1‑101 (MQ=255)
                                                                                             ggggTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGAAAGTATGGCGTACGGTTTTg    <  2:5242847/101‑1 (MQ=255)
                                                                                               ggTGTCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGaa                                            <  1:5243070/59‑1 (MQ=255)
                                                                                                  |                                                                                                 
ATCTGTTAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTATCGCGTCGCGGTTGTCGATATTCAGAGCGACAAAGCCGCAAATGTGGCACAAGAAATTAACGCCGAATATGGTGAAAGTATGGCGTACGGTTTTGGT  >  NC_000913/2827718‑2827913

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A