Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F13 I1 R1 185 260.8 12342668 99.6% 12293297 98.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,833,866 G→A C464Y (TGC→TAC)  norV → anaerobic nitric oxide reductase flavorubredoxin

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,833,8660GA100.0% 985.9 / NA 259C464Y (TGC→TAC) norVanaerobic nitric oxide reductase flavorubredoxin
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (122/137);  total (122/137)

Only 100 of 259 total aligned reads displayed.

CCAGTGGATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATGCTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGCCGCCCGCCAACTGG  >  NC_000913/2833768‑2833963
                                                                                                  |                                                                                                 
ccAGTGGATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACt                                                                                                 <  1:3662955/101‑1 (MQ=255)
ccAGTGGATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACt                                                                                                 <  1:3662785/101‑1 (MQ=255)
ccAGTGGATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACt                                                                                                 <  1:3662720/101‑1 (MQ=255)
ccAGTGGATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACt                                                                                                 <  2:3662954/101‑1 (MQ=255)
  aGTGGATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTcc                                                                                               <  1:3662742/101‑1 (MQ=255)
  aGTGGATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTcc                                                                                               >  2:3663120/1‑101 (MQ=255)
    tGGATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCt                                                                                             <  1:3663008/101‑1 (MQ=255)
    tGGATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCt                                                                                             >  1:3663121/1‑101 (MQ=255)
     ggATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTc                                                                                            >  2:3663123/1‑101 (MQ=255)
     ggATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTc                                                                                            <  1:3662821/101‑1 (MQ=255)
           aCGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCaaa                                                                                      <  1:3662841/101‑1 (MQ=255)
            cGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAg                                                                                     >  2:3663129/1‑101 (MQ=255)
            cGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAg                                                                                     <  1:3662702/101‑1 (MQ=255)
            cGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAg                                                                                     >  1:3663128/1‑101 (MQ=255)
            cGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAg                                                                                     <  2:3662609/101‑1 (MQ=255)
            cGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAg                                                                                     <  2:3662799/101‑1 (MQ=255)
              aTCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGAc                                                                                   <  2:3662883/101‑1 (MQ=255)
                ccGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGt                                                                                 >  2:3663134/1‑101 (MQ=255)
                 cGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTc                                                                                <  1:3662861/101‑1 (MQ=255)
                 cGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTc                                                                                >  1:3663135/1‑101 (MQ=255)
                  ggCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCt                                                                               <  1:3662690/101‑1 (MQ=255)
                   gCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCtt                                                                              <  2:3662768/101‑1 (MQ=255)
                   gCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCtt                                                                              >  1:3663137/1‑101 (MQ=255)
                     aaaaGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACg                                                                                  <  2:3662750/95‑1 (MQ=255)
                     aaaaGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTg                                                                            >  2:3663140/1‑101 (MQ=255)
                     aaaaGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTg                                                                            <  1:3662778/101‑1 (MQ=255)
                     aaaaGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTg                                                                            >  1:3663141/1‑101 (MQ=255)
                      aaaGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTga                                                                           >  1:3663145/1‑101 (MQ=255)
                       aaGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTgaa                                                                          <  1:3662912/101‑1 (MQ=255)
                       aaGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTgaa                                                                          >  2:3663146/1‑101 (MQ=255)
                         ggCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTgaaga                                                                        >  1:3663149/1‑101 (MQ=255)
                            gAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACt                                                                     >  2:3663152/1‑101 (MQ=255)
                             aGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTg                                                                    >  1:3663156/1‑101 (MQ=255)
                             aGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTg                                                                    <  1:3662698/101‑1 (MQ=255)
                               ccAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGc                                                                  >  1:3663158/1‑101 (MQ=255)
                               ccAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGc                                                                  <  1:3662936/101‑1 (MQ=255)
                                cAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCa                                                                 <  2:3662630/101‑1 (MQ=255)
                                cAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCa                                                                 <  1:3662848/101‑1 (MQ=255)
                                cAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCa                                                                 >  2:3663159/1‑101 (MQ=255)
                                   tGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCg                                                              >  1:3663163/1‑101 (MQ=255)
                                   tGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCg                                                              <  1:3662713/101‑1 (MQ=255)
                                     cAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGa                                                            <  1:3662835/101‑1 (MQ=255)
                                     cAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGa                                                            >  2:3663165/1‑101 (MQ=255)
                                      cggACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAg                                                           >  1:3663166/2‑101 (MQ=255)
                                      aGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAg                                                           <  1:3662879/101‑1 (MQ=255)
                                      aGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAg                                                           <  1:3662567/101‑1 (MQ=255)
                                      aGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAg                                                           <  2:3662840/101‑1 (MQ=255)
                                        gACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGc                                                         <  2:3662569/101‑1 (MQ=255)
                                             tGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAAt                                                    <  2:3662781/101‑1 (MQ=255)
                                             tGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAAt                                                    >  1:3663171/1‑101 (MQ=255)
                                               cgcCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGa                                                  <  2:3662924/101‑1 (MQ=255)
                                                gcCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAg                                                 >  2:3663175/1‑101 (MQ=255)
                                                  cAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTa                                               >  1:3663177/1‑101 (MQ=255)
                                                   aGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTaa                                              >  2:3663179/1‑101 (MQ=255)
                                                   aGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTaa                                              <  2:3662803/101‑1 (MQ=255)
                                                     gAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACg                                            <  2:3662693/101‑1 (MQ=255)
                                                     gAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACg                                            <  2:3663171/101‑1 (MQ=255)
                                                        cGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCa                                         <  2:3663007/101‑1 (MQ=255)
                                                         gCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCAt                                        <  1:3662635/101‑1 (MQ=255)
                                                         gCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGAAACGGCAt                                        >  2:3663183/1‑101 (MQ=255)
                                                          ccGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGt                                                                                 >  2:3663186/1‑59 (MQ=255)
                                                          ccGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCAtt                                       <  1:3662753/101‑1 (MQ=255)
                                                          ccGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCAtt                                       <  1:3662808/101‑1 (MQ=255)
                                                          ccGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCAtt                                       >  1:3663185/1‑101 (MQ=255)
                                                          ccGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCAtt                                       <  2:3662907/101‑1 (MQ=255)
                                                            gTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATtgt                                     <  1:3662963/101‑1 (MQ=255)
                                                             tGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATtgtg                                    <  2:3662837/101‑1 (MQ=255)
                                                               gAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGat                                  <  1:3662815/101‑1 (MQ=255)
                                                                  tGAAGTCCCGGATAGCTTCCTCTGCCCGGAATACTcc                                                                                               <  2:3662661/37‑1 (MQ=255)
                                                                  tGAAGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGatcat                               <  1:3662901/101‑1 (MQ=255)
                                                                     aGTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCgg                            <  2:3662865/101‑1 (MQ=255)
                                                                      gTCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGt                           <  1:3662874/101‑1 (MQ=255)
                                                                       tCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGtt                          >  1:3663191/1‑101 (MQ=255)
                                                                       tCCCGGATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGtt                          >  2:3663192/1‑101 (MQ=255)
                                                                           ggATAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCggg                      >  1:3663195/1‑101 (MQ=255)
                                                                             aTAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCt                    >  2:3663201/1‑101 (MQ=255)
                                                                             aTAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCt                    >  1:3663202/1‑101 (MQ=255)
                                                                             aTAACTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCt                    >  2:3663199/1‑101 (MQ=255)
                                                                               aaCTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTc                  >  2:3663205/1‑101 (MQ=255)
                                                                                aCTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCg                             >  2:3663209/1‑89 (MQ=255)
                                                                                aCTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTcg                 >  1:3663208/1‑101 (MQ=255)
                                                                                 cTTCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTcgc                >  1:3663212/1‑101 (MQ=255)
                                                                                  ttCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTcgcc               <  2:3662641/101‑1 (MQ=255)
                                                                                   tCCTCTGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTcgccg              >  2:3663215/1‑101 (MQ=255)
                                                                                      tctGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGccgccc           <  2:3662918/101‑1 (MQ=255)
                                                                                      tctGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGccgccc           <  2:3662854/101‑1 (MQ=255)
                                                                                      tctGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGccgccc           >  1:3663220/1‑101 (MQ=255)
                                                                                       ctGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGccgcccg          >  2:3663221/1‑101 (MQ=255)
                                                                                        tGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGccgcccgc         <  2:3662814/101‑1 (MQ=255)
                                                                                        tGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGccgcccgc         >  2:3663224/1‑101 (MQ=255)
                                                                                        tGCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGccgccc           <  2:3662895/99‑1 (MQ=255)
                                                                                         gCCCGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGCcgcccgcc        >  1:3663225/1‑101 (MQ=255)
                                                                                          cccGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGCCGCCCGCCa       <  2:3663043/101‑1 (MQ=255)
                                                                                           ccGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGCcgcccgcc        >  1:3663230/1‑99 (MQ=255)
                                                                                            cGGAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGTGTAACGGCATTGTGATCATCGGTTCGGGCTTCGCCGCCCGCCAAc     >  2:3663232/1‑101 (MQ=255)
                                                                                             ggAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGCCGCCCGCCAACt    >  1:3663234/1‑101 (MQ=255)
                                                                                             ggAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGCCGCCCGCCAACt    >  2:3663235/1‑101 (MQ=255)
                                                                                              gAATACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGCCGCCCGCCAACTg   <  1:3662890/101‑1 (MQ=255)
                                                                                               aaTACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGCCGCCCGCCAACTgg  <  2:3662729/101‑1 (MQ=255)
                                                                                               aaTACTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGCCGCCCGCCAACTgg  >  2:3663239/1‑101 (MQ=255)
                                                                                                  |                                                                                                 
CCAGTGGATTTACGATCCGGCAAAAGGCGAGCCAATGCAGGACGTTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATGCTCCCTCGGCAAAGACGTCTTTGAAGAACTGGCATCGGAGGCAAAATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGCCGCCCGCCAACTGG  >  NC_000913/2833768‑2833963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A