mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 48,837 | Δ1 bp | coding (1069/1863 nt) | kefC → | K(+) : H(+) antiporter KefC |
| RA | 49,873 | A→G | E17E (GAA→GAG) | folA → | dihydrofolate reductase |
| RA | 146,550 | C→T | V49I (GTC→ATC) | panD ← | aspartate 1‑decarboxylase proenzyme |
| RA | 158,868 | C→T | A87T (GCC→ACC) | pcnB ← | poly(A) polymerase I |
| RA | 170,285 | T→C | L170L (TTG→CTG) | fhuC → | iron(III) hydroxamate ABC transporter ATP binding subunit |
| RA | 205,987 | A→G | T288A (ACC→GCC) | dnaE → | DNA polymerase III subunit alpha |
| RA | 269,158 | C→T | intergenic (‑198/+131) | ykfA ← / ← perR | CP4‑6 prophage; putative GTP‑binding protein YkfA/putative transcriptional regulator PerR |
| RA | 297,700 | C→T | R31H (CGT→CAT) | yagP ← | putative LysR family substrate binding domain‑containing protein YagP |
| RA | 299,053 | C→T | G628S (GGC→AGC) | paoC ← | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| RA | 325,767 | A→G | V494A (GTA→GCA) | betA ← | choline dehydrogenase |
| RA | 329,556 | A→G | T32A (ACG→GCG) | betT → | choline:H(+) symporter |
| RA | 338,135 | C→T | A453V (GCG→GTG) | yahF → | putative acyl‑CoA synthetase YahF |
| RA | 342,600 | A→G | intergenic (+93/‑284) | yahJ → / → yahK | putative deaminase with metallo‑dependent hydrolase domain/aldehyde reductase, NADPH‑dependent |
| RA | 343,539 | C→T | A219V (GCC→GTC) | yahK → | aldehyde reductase, NADPH‑dependent |
| RA | 360,114 | C→T | T41T (ACC→ACT) | cynX → | cyanate transporter |
| RA | 375,067 | A→G | intergenic (+186/‑392) | mhpE → / → mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| RA | 375,087 | C→T | intergenic (+206/‑372) | mhpE → / → mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| RA | 385,090 | A→G | intergenic (‑474/‑142) | yaiS ← / → tauA | putative deacetylase YaiS/taurine ABC transporter periplasmic binding protein |
| RA | 402,583 | C→T | G279G (GGC→GGT) | phoA → | alkaline phosphatase |
| RA | 456,497 | (T)8→7 | intergenic (+66/‑180) | tig → / → clpP | trigger factor/ATP‑dependent Clp protease proteolytic subunit |
| RA | 465,107 | A→G | S147S (AGT→AGC) | queC ← | 7‑cyano‑7‑deazaguanine synthase |
| RA | 543,318 | A→G | R243R (CGT→CGC) | allE ← | (S)‑ureidoglycine aminohydrolase |
| RA | 570,475 | A→G | intergenic (+47/‑418) | ybcK → / → ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| RA | 576,733 | A→G | pseudogene (93/1040 nt) | nmpC ← | DLP12 prophage; putative outer membrane porin NmpC |
| RA | 581,068 | C→T | P79S (CCA→TCA) | nohD → | DLP12 prophage; putative DNA‑packaging protein NohD |
| RA | 588,320 | C→T | A879T (GCC→ACC) | nfrA ← | bacteriophage N4 receptor, outer membrane protein |
| RA | 591,967 | C→T | M404I (ATG→ATA) | nfrB ← | bacteriophage N4 receptor, inner membrane subunit |
| RA | 621,820 | C→T | A124T (GCC→ACC) | fepD ← | ferric enterobactin ABC transporter membrane subunit FebD |
| RA | 636,230 | C→T | E114K (GAA→AAA) | ybdN ← | putative PAPS reductase/DUF3440 domain‑containing protein YbdN |
| RA | 827,694 | A→G | Y430H (TAT→CAT) | ybhF ← | putative ABC exporter ATP binding subunit |
| RA | 834,929 | C→T | S620S (AGC→AGT) | dinG → | ATP‑dependent DNA helicase DinG |
| RA | 852,384 | C→T | A72T (GCG→ACG) | opgE ← | phosphoethanolamine transferase |
| RA | 906,867 | T→C | E472E (GAA→GAG) | ybjT ← | putative NAD(P)‑dependent oxidoreductase YbjT |
| RA | 915,225 | (C)5→4 | intergenic (‑368/+127) | lysO ← / ← aqpZ | L‑lysine exporter/water channel AqpZ |
| RA | 974,415 | C→T | L33L (CTG→TTG) | mukF → | chromosome partitioning protein MukF |
| RA | 1,013,461 | A→G | D68G (GAC→GGC) | pqiB → | intermembrane transport protein PqiB |
| RA | 1,057,599 | C→T | R119Q (CGA→CAA) | torR ← | DNA‑binding transcriptional dual regulator TorR |
| RA | 1,097,218 | (G)7→6 | intergenic (+389/+347) | ycdU → / ← serX | uncharacterized protein YcdU/tRNA‑Ser |
| RA | 1,142,249 | T→C | T707A (ACC→GCC) | rne ← | ribonuclease E |
| RA | 1,171,768 | G→A | R733C (CGC→TGC) | mfd ← | transcription‑repair coupling factor |
| RA | 1,175,049 | T→C | L39L (TTA→TTG) | ycfT ← | inner membrane protein YcfT |
| RA | 1,175,732 | A→G | V102V (GTA→GTG) | lolC → | lipoprotein release complex ‑ inner membrane subunit |
| RA | 1,193,565 | T→C | H70R (CAC→CGC) | mnmA ← | tRNA‑specific 2‑thiouridylase |
| RA | 1,207,235 | C→T | A108V (GCC→GTC) | ymfQ → | e14 prophage; conserved protein YmfQ |
| RA | 1,209,141 | T→C | pseudogene (515/537 nt) | stfE ← | e14 prophage; putative side tail fiber protein fragment |
| RA | 1,226,411 | (T)6→7 | intergenic (‑331/‑189) | minC ← / → ycgJ | Z‑ring positioning protein MinC/PF05666 family protein YcgJ |
| RA | 1,239,890 | A→G | T338A (ACG→GCG) | dadX → | alanine racemase 2 |
| RA | 1,261,695 | C→T | A61T (GCC→ACC) | prs ← | ribose‑phosphate diphosphokinase |
| RA | 1,300,904 | A→G | intergenic (+357/‑278) | insH21 → / → oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,342,046 | T→C | R42R (CGT→CGC) | pyrF → | orotidine‑5'‑phosphate decarboxylase |
| RA | 1,351,196 | (G)7→6 | intergenic (‑157/+211) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase/DUF559 domain‑containing protein YcjD |
| RA | 1,352,436 | T→C | T67A (ACC→GCC) | sapF ← | putrescine ABC exporter ATP binding protein SapF |
| RA | 1,354,511 | T→C | Y3C (TAC→TGC) L320L (TTA→TTG) |
sapC ← sapB ← |
putrescine ABC exporter membrane protein SapC putrescine ABC exporter membrane subunit SapB |
| RA | 1,379,443 | A→G | L520L (CTA→CTG) | ycjT → | kojibiose phosphorylase |
| RA | 1,439,814 | T→C | D324G (GAC→GGC) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,440,577 | C→T | A70T (GCT→ACT) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,457,623 | A→G | T43A (ACC→GCC) | paaF → | putative 2,3‑dehydroadipyl‑CoA hydratase |
| RA | 1,474,680 | G→A | G154S (GGC→AGC) | pdxI → | pyridoxine 4‑dehydrogenase |
| RA | 1,479,687 | (G)6→7 | coding (550/1758 nt) | ynbC → | hydrolase/methyltransferase domain‑containing protein YnbC |
| RA | 1,482,301 | G→A | A187V (GCA→GTA) | azoR ← | FMN dependent NADH:quinone oxidoreductase |
| RA | 1,555,170 | C→T | G167D (GGC→GAC) | maeA ← | malate dehydrogenase, NAD‑requiring |
| RA | 1,594,132 | (C)8→9 | pseudogene (3955/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,601,705 | C→T | G72G (GGC→GGT) | lsrA → | Autoinducer‑2 ABC transporter ATP binding subunit |
| RA | 1,620,807 | G→A | R111* (CGA→TGA) | eamA ← | cysteine/O‑acetylserine exporter EamA |
| RA | 1,640,401 | T→C | E62G (GAA→GGA) | essQ ← | Qin prophage; putative S lysis protein |
| RA | 1,650,575 | G→A | pseudogene (498/921 nt) | ydfE → | Qin prophage; protein YdfE |
| RA | 1,686,708 | (A)7→6 | intergenic (‑120/+23) | fumC ← / ← fumA | fumarase C/fumarase A |
| RA | 1,710,491 | G→A | A96A (GCG→GCA) | rsxG → | SoxR [2Fe‑2S] reducing system protein RsxG |
| RA | 1,712,544 | G→A | intergenic (+386/‑225) | nth → / → dtpA | endonuclease III/dipeptide/tripeptide:H(+) symporter DtpA |
| RA | 1,742,293 | T→C | V294A (GTA→GCA) | cfa → | cyclopropane fatty acyl phospholipid synthase |
| RA | 1,752,145 | C→T | W562* (TGG→TGA) | ydhV ← | putative oxidoreductase |
| RA | 1,761,354 | T→C | Q146Q (CAA→CAG) | sufD ← | Fe‑S cluster scaffold complex subunit SufD |
| RA | 1,761,579 | T→C | P71P (CCA→CCG) | sufD ← | Fe‑S cluster scaffold complex subunit SufD |
| RA | 1,785,435 | T→C | T560A (ACT→GCT) | ppsA ← | phosphoenolpyruvate synthetase |
| RA | 1,789,588 | G→T | intergenic (+107/‑25) | aroH → / → ydiE | 3‑deoxy‑7‑phosphoheptulonate synthase, Trp‑sensitive/PF10636 family protein YdiE |
| RA | 1,871,832 | (G)6→7 | coding (1448/1476 nt) | cdgI → | putative c‑di‑GMP binding protein CdgI |
| JC JC | 1,873,031 | IS1 (–) +9 bp | coding (991‑999/1491 nt) | dgcJ → | putative diguanylate cyclase DgcJ |
| RA | 1,873,800 | A→G | Q76R (CAG→CGG) | yeaK → | mischarged aminoacyl‑tRNA deacylase |
| RA | 1,880,710 | G→A | A17V (GCC→GTC) | leuE ← | leucine exporter |
| RA | 1,938,052 | A→G | Q135R (CAG→CGG) | pykA → | pyruvate kinase II |
| RA | 1,953,492 | A→T | S17S (TCA→TCT) | cmoB → | tRNA U34 carboxymethyltransferase |
| RA | 1,963,935 | G→A | I372I (ATC→ATT) | flhA ← | flagellar biosynthesis protein FlhA |
| RA | 1,981,422 | G→A | A64V (GCC→GTC) | otsA ← | trehalose‑6‑phosphate synthase |
| RA | 1,981,526 | (C)5→6 | coding (87/1425 nt) | otsA ← | trehalose‑6‑phosphate synthase |
| RA | 2,013,366 | (C)5→4 | coding (138/1659 nt) | fliF → | flagellar basal‑body MS‑ring and collar protein |
| RA | 2,027,014 | T→C | D335G (GAC→GGC) | dgcQ ← | putative diguanylate cyclase DgcQ |
| RA | 2,051,895 | T→C | Y2320H (TAT→CAT) | yeeJ → | inverse autotransporter adhesin |
| RA | 2,061,706 | T→C | E76E (GAA→GAG) | nac ← | DNA‑binding transcriptional dual regulator Nac |
| RA | 2,108,168 | A→G | G54G (GGT→GGC) | glf ← | UDP‑galactopyranose mutase |
| RA | 2,116,933 | A→G | P65P (CCT→CCC) | wcaL ← | putative colanic biosynthesis glycosyl transferase |
| RA | 2,130,945 | T→C | T376A (ACC→GCC) | wcaC ← | putative colanic acid biosynthesis glycosyl transferase |
| RA | 2,148,233 | A→G | D187G (GAC→GGC) | yegD → | HSP70 family protein YegD |
| RA | 2,165,573 | (C)6→5 | intergenic (+52/‑95) | yegP → / → yegQ | DUF1508 domain‑containing protein YegP/putative peptidase YegQ |
| RA | 2,256,630 | A→G | F236L (TTC→CTC) | psuT ← | putative pseudouridine transporter |
| RA | 2,274,409 | C→T | G77G (GGC→GGT) | yejB → | putative oligopeptide ABC transporter membrane subunit YejB |
| RA | 2,279,670 | Δ1 bp | coding (91/1191 nt) | bcr ← | multidrug efflux pump Bcr |
| RA | 2,314,061 | G→A | A192T (GCC→ACC) | rcsD → | RcsD phosphotransferase |
| RA | 2,350,598 | C→T | M138I (ATG→ATA) | glpQ ← | glycerophosphoryl diester phosphodiesterase |
| RA | 2,388,781 | A→G | E49E (GAA→GAG) | yfbO → | uncharacterized protein YfbO |
| RA | 2,401,052 | T→C | E168E (GAA→GAG) | nuoF ← | NADH:quinone oxidoreductase subunit F |
| RA | 2,457,607 | T→C | H518R (CAC→CGC) | fadJ ← | 3‑hydroxyacyl‑CoA dehydrogenase FadJ |
| RA | 2,469,931 | C→T | A267A (GCC→GCT) | yfdI → | CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase |
| RA | 2,478,945 | (G)5→4 | coding (1099/1338 nt) | dsdX → | D‑serine transporter |
| RA | 2,486,481 | (A)7→8 | coding (2108/3594 nt) | evgS → | sensory histidine kinase EvgS |
| RA | 2,527,749 | T→C | G268G (GGT→GGC) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,560,020 | T→C | I388T (ATT→ACT) | intZ → | CPZ‑55 prophage; putative phage integrase IntZ |
| RA | 2,565,832 | (C)5→6 | coding (1053/1404 nt) | eutA ← | reactivating factor for ethanolamine ammonia‑lyase EutBC |
| RA | 2,589,059 | A→G | T489A (ACT→GCT) | acrD → | multidrug efflux pump RND permease AcrD |
| RA | 2,665,067 | T→C | A226A (GCT→GCC) | yfhR → | putative peptidase |
| RA | 2,667,370 | G→A | I159I (ATC→ATT) | hcaT ← | putative 3‑phenylpropionate transporter |
| RA | 2,703,772 | G→A | P98S (CCA→TCA) | rnc ← | RNase III |
| RA | 2,749,014 | G→A | G81S (GGC→AGC) | yfjD → | putative inner membrane protein |
| RA | 2,765,694 | G→A | A28V (GCA→GTA) | yfjM ← | CP4‑57 prophage; protein YfjM |
| RA | 2,777,543 | G→A | E31K (GAA→AAA) | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,809,113 | G→A | pseudogene (798/1178 nt) | ygaY → | putative transporter YgaY, N‑terminal fragment |
| RA | 2,833,866 | G→A | C464Y (TGC→TAC) | norV → | anaerobic nitric oxide reductase flavorubredoxin |
| RA | 2,876,347 | A→G | intergenic (‑18/‑234) | cysD ← / → iap | sulfate adenylyltransferase subunit 2/alkaline phosphatase isozyme conversion protein |
| RA | 2,877,743 | G→A | intergenic (+125/+826) | iap → / ← cas2 | alkaline phosphatase isozyme conversion protein/CRISPR‑associated endoribonuclease Cas2 |
| RA | 2,900,470 | A→G | intergenic (‑197/‑122) | ygcW ← / → yqcE | putative deoxygluconate dehydrogenase/putative transport protein YqcE |
| RA | 2,903,704 | C→T | intergenic (+330/+1043) | ygcE → / ← queE | putative sugar kinase YgcE/putative 7‑carboxy‑7‑deazaguanine synthase QueE |
| RA | 2,935,179 | T→C | G315G (GGT→GGC) | fucP → | L‑fucose:H(+) symporter |
| RA | 2,974,350 | G→A | R555R (CGC→CGT) | aas ← | acyltransferase |
| RA | 2,977,660 | A→C | L414V (TTA→GTA) | lysA ← | diaminopimelate decarboxylase |
| RA | 2,990,649 | T→C | pseudogene (96/490 nt) | ygeF → | protein YgeF |
| RA | 3,009,831 | C→T | G356G (GGC→GGT) | ygeY → | putative peptidase YgeY |
| RA | 3,017,921 | G→A | C621Y (TGC→TAC) | ygfK → | putative oxidoreductase, Fe‑S subunit |
| RA | 3,020,004 | T→C | F282L (TTC→CTC) | ssnA → | putative aminohydrolase |
| RA | 3,020,184 | G→A | A342T (GCC→ACC) | ssnA → | putative aminohydrolase |
| RA | 3,038,422 | A→G | L134P (CTG→CCG) | dsbC ← | protein disulfide isomerase DsbC |
| RA | 3,068,404 | G→A | S135S (AGC→AGT) | argO ← | L‑arginine exporter |
| RA | 3,080,655 | G→A | R327R (CGC→CGT) | tktA ← | transketolase 1 |
| RA | 3,161,930 | T→C | N247S (AAC→AGC) | ftsP ← | cell division protein required during stress conditions |
| RA | 3,181,406 | G→A | G329D (GGC→GAC) | ygiC → | putative enzyme with ATPase activity |
| RA | 3,245,135 | (T)8→9 | intergenic (‑394/‑89) | uxaC ← / → exuT | D‑glucoronate/D‑galacturonate isomerase/hexuronate transporter |
| RA | 3,250,546 | C→T | intergenic (+170/‑16) | yqjK → / → yqjF | conserved protein YqjK/DoxX family protein |
| RA | 3,274,540 | C→T | G123D (GGC→GAC) | garP ← | galactarate/glucarate/glycerate transporter GarP |
| RA | 3,310,748 | A→G | S141P (TCT→CCT) | pnp ← | polynucleotide phosphorylase |
| RA | 3,339,507 | T→C | I187V (ATT→GTT) | mlaF ← | intermembrane phospholipid transport system, ATP binding subunit MlaF |
| RA | 3,341,494 | C→A | P77T (CCT→ACT) | kdsD → | D‑arabinose 5‑phosphate isomerase KdsD |
| RA | 3,372,795 | T→C | Y261C (TAT→TGT) | nanA ← | N‑acetylneuraminate lyase |
| RA | 3,405,323 | T→C | intergenic (+865/‑113) | yhdH → / → accB | acrylyl‑CoA reductase/biotin carboxyl carrier protein |
| RA | 3,432,176 | C→A | V97L (GTG→TTG) | smg ← | DUF494 domain‑containing protein Smg |
| RA | 3,484,088 | (C)6→7 | coding (887/1023 nt) | yheT → | putative hydrolase YheT |
| RA | 3,492,250 | A→G | S16S (TCT→TCC) | ppiA ← | peptidyl‑prolyl cis‑trans isomerase A |
| RA | 3,494,457 | C→T | A149A (GCC→GCT) | nirB → | nitrite reductase catalytic subunit NirB |
| RA | 3,521,219 | T→C | P77P (CCA→CCG) | hofO ← | DNA utilization protein HofO |
| RA | 3,530,370 | A→G | E199E (GAA→GAG) | hslO → | molecular chaperone Hsp33 |
| RA | 3,584,362 | A→G | intergenic (+53/‑42) | yrhA → / → yrhD | putative uncharacterized protein YrhA/uncharacterized protein YrhD |
| RA | 3,596,545 | C→T | G339E (GGG→GAG) | livK ← | L‑leucine/L‑phenylalanine ABC transporter periplasmic binding protein |
| RA | 3,607,955 | T→C | V502A (GTC→GCC) | zntA → | Zn(2(+))/Cd(2(+))/Pb(2(+)) exporting P‑type ATPase |
| RA | 3,656,479 | T→C | T88A (ACT→GCT) | hdeA ← | HdeA monomer, chaperone active form |
| RA | 3,664,111 | (T)8→7 | coding (508/729 nt) | gadW ← | DNA‑binding transcriptional dual regulator GadW |
| RA | 3,694,890 | T→C | Y116C (TAC→TGC) | bcsA ← | cellulose synthase catalytic subunit |
| RA | 3,698,595 | G→A | A128T (GCC→ACC) | bcsG → | cellulose phosphoethanolamine transferase |
| RA | 3,733,248 | G→A | G350S (GGC→AGC) | xylG → | xylose ABC transporter ATP binding subunit |
| RA | 3,759,734 | G→A | A43V (GCC→GTC) | selB ← | selenocysteyl‑tRNA‑specific translation elongation factor |
| RA | 3,794,218 | T→C | C78R (TGC→CGC) | rfaD → | ADP‑L‑glycero‑D‑mannoheptose 6‑epimerase |
| RA | 3,799,022 | T→C | E97E (GAA→GAG) | waaU ← | putative ADP‑heptose:LPS heptosyltransferase 4 |
| RA | 3,879,747 | C→T | A125T (GCC→ACC) | gyrB ← | DNA gyrase subunit B |
| RA | 3,917,420 | (C)5→6 | coding (846/864 nt) | atpG ← | ATP synthase F1 complex subunit gamma |
| RA | 3,999,034 | C→T | A351V (GCC→GTC) | uvrD → | ssDNA translocase and dsDNA helicase ‑ DNA helicase II |
| RA | 4,082,606 | A→G | W52R (TGG→CGG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | 4,133,750 | C→T | intergenic (+244/‑85) | metF → / → katG | 5,10‑methylenetetrahydrofolate reductase/hydroperoxidase I |
| RA | 4,158,512 | A→G | Y8C (TAC→TGC) | oxyR → | DNA‑binding transcriptional dual regulator OxyR |
| RA | 4,178,981 | A→G | T35A (ACT→GCT) | rplA → | 50S ribosomal subunit protein L1 |
| RA | 4,179,794 | C→T | intergenic (+211/‑202) | rplA → / → rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 |
| RA | 4,240,162 | A→G | intergenic (‑107/‑163) | yjbT ← / → psiE | PF17089 family protein YjbT/putative phosphate starvation‑inducible protein |
| RA | 4,242,488 | A→G | intergenic (‑234/+138) | xylE ← / ← malG | D‑xylose:H(+) symporter/maltose ABC transporter membrane subunit MalG |
| RA | 4,262,865 | G→A | G9D (GGC→GAC) | pspG → | phage shock protein G |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,329,894 | (G)6→7 | coding (535/879 nt) | yjcZ → | uncharacterized protein YjcZ |
| RA | 4,340,409 | Δ1 bp | coding (113/2268 nt) | adiA ← | arginine decarboxylase, degradative |
| RA | 4,392,261 | (A)8→9 | intergenic (+112/‑99) | orn → / → glyV | oligoribonuclease/tRNA‑Gly |
| RA | 4,393,081 | A→G | S329S (AGT→AGC) | queG ← | epoxyqueuosine reductase |
| RA | 4,410,312 | T→C | S60S (AGT→AGC) | yjfI → | conserved protein YjfI |
| RA | 4,416,734 | A→G | F13L (TTT→CTT) | bsmA ← | DUF1471 domain‑containing putative lipoprotein BsmA |
| RA | 4,424,457 | (A)8→9 | intergenic (+71/+59) | ulaF → / ← yjfY | L‑ribulose‑5‑phosphate 4‑epimerase UlaF/DUF1471 domain‑containing protein YjfY |
| RA | 4,440,749 | C→T | G156D (GGC→GAC) | ytfL ← | putative inner membrane protein |
| RA | 4,443,868 | C→T | A496V (GCC→GTC) | tamA → | translocation and assembly module subunit TamA |
| RA | 4,468,399 | G→A | G259S (GGT→AGT) | mgtA → | Mg(2(+)) importing P‑type ATPase |
| RA | 4,492,583 | (G)6→7 | intergenic (‑58/+4) | idnT ← / ← idnO | L‑idonate/5‑ketogluconate/gluconate transporter/5‑keto‑D‑gluconate 5‑reductase |
| RA | 4,509,873 | A→G | pseudogene (70/330 nt) | yjhV → | KpLE2 phage‑like element; putative uncharacterized protein YjhV |
| RA | 4,606,215 | (G)8→9 | noncoding (72/87 nt) | leuP ← | tRNA‑Leu |
| RA | 4,627,705 | T→C | F131L (TTT→CTT) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,633,405 | A→G | V114A (GTG→GCG) | yjjX ← | ITPase/XTPase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 339828–339934 | 340046–339980 | 47–219 | 162 [157] | [157] 163 | yahH | putative uncharacterized protein YahH |
| * | * | ÷ | NC_000913 | 361201 | 361928 | 728 | 159 [155] | [158] 159 | lacA–[lacY] | lacA,[lacY] |
| * | * | ÷ | NC_000913 | 2856977 | 2857095 | 119 | 160 [158] | [0] 275 | [mutS] | [mutS] |
| * | * | ÷ | NC_000913 | 3423691–3424234 | 3424613–3424238 | 5–923 | 161 [154] | [157] 160 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 70046 = | 239 (0.930) | 259 (1.030) | 140/188 | 0.1 | 69.1% | coding (3/1701 nt) | araB | ribulokinase |
| ? | NC_000913 | 2857096 = | 0 (0.000) | coding (4/2562 nt) | mutS | DNA mismatch repair protein MutS | |||||